RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PLCD4Q9BRC7 762 aa15.55■□□□□ 0.08
USP42-206ENST00000479544 GRM8O00222 908 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 EVA1CP58658 441 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 ODF2Q5BJF6 829 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 CAPZA3Q96KX2 299 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 HINFPQ9BQA5 517 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 C11orf57Q6ZUT1 292 aaPredicted RBP15.54■□□□□ 0.08
USP42-206ENST00000479544 SEC62Q99442 399 aaKnown RBP15.54■□□□□ 0.08
USP42-206ENST00000479544 INO80Q9ULG1 1556 aaPredicted RBP15.54■□□□□ 0.08
USP42-206ENST00000479544 SBNO2Q9Y2G9 1366 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 CYP2E1P05181 493 aaPredicted RBP15.54■□□□□ 0.08
USP42-206ENST00000479544 TDO2P48775 406 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 LONRF3Q496Y0 759 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 SLC26A6Q9BXS9 759 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 ZBTB3Q9H5J0 574 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 BRMS1Q9HCU9 246 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 ANKRD65E5RJM6 399 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 ATP2C2O75185 946 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 GYS2P54840 703 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 FANCCQ00597 558 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.54■□□□□ 0.08
USP42-206ENST00000479544 DESI2Q9BSY9 194 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 GBP3Q9H0R5 595 aa15.54■□□□□ 0.08
USP42-206ENST00000479544 N4BP3O15049 544 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 CDR1P51861 262 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 GPIHBP1Q8IV16 184 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 ALG1Q9BT22 464 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 TANGO6Q9C0B7 1094 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 A0A0D9SFI3 127 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 MINDY4BA8MYZ0 360 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 CDKL5O76039 1030 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 IRX3P78415 501 aaPredicted RBP15.53■□□□□ 0.08
USP42-206ENST00000479544 MCMDC2Q4G0Z9 681 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 COPS6Q7L5N1 327 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 ZNF710Q8N1W2 664 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 CCDC148Q8NFR7 591 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 BICC1Q9H694 974 aaKnown RBP15.53■□□□□ 0.08
USP42-206ENST00000479544 TMEM2Q9UHN6 1383 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 DDIT3P35638 169 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 IARSP41252 1262 aaKnown RBP15.53■□□□□ 0.08
USP42-206ENST00000479544 TIMM10P62072 90 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 KCNG4Q8TDN1 519 aa15.53■□□□□ 0.08
USP42-206ENST00000479544 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.53■□□□□ 0.081e-6■■□□□ 12.4
USP42-206ENST00000479544 USP27XA6NNY8 438 aa15.52■□□□□ 0.08
USP42-206ENST00000479544 ZSCAN26Q16670 478 aa15.52■□□□□ 0.08
USP42-206ENST00000479544 GOLGA1Q92805 767 aa15.52■□□□□ 0.08
USP42-206ENST00000479544 JADE2Q9NQC1 790 aa15.52■□□□□ 0.08
USP42-206ENST00000479544 MAP3K19Q56UN5 1328 aa15.52■□□□□ 0.08
USP42-206ENST00000479544 TMEM94Q12767 1356 aa15.52■□□□□ 0.08
USP42-206ENST00000479544 GOLGA8AA7E2F4 631 aa15.52■□□□□ 0.07
USP42-206ENST00000479544 IFIT3O14879 490 aaKnown RBP15.52■□□□□ 0.07
USP42-206ENST00000479544 LRRC59Q96AG4 307 aaKnown RBP15.52■□□□□ 0.07
USP42-206ENST00000479544 ZCCHC17Q9NP64 241 aaKnown RBP15.52■□□□□ 0.07
USP42-206ENST00000479544 TATP17735 454 aaPredicted RBP15.51■□□□□ 0.07
USP42-206ENST00000479544 SMC1AQ14683 1233 aaKnown RBP15.51■□□□□ 0.07
USP42-206ENST00000479544 LMBR1LQ6UX01 489 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 XAGE3Q8WTP9 111 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 TTC41PQ6P2S7 1318 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 LTKP29376 864 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 ADKP55263 362 aaKnown RBP15.51■□□□□ 0.07
USP42-206ENST00000479544 ZNF772Q68DY9 489 aaPredicted RBP15.51■□□□□ 0.07
USP42-206ENST00000479544 AIDAQ96BJ3 306 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 BAG1Q99933 345 aaPredicted RBP15.51■□□□□ 0.07
USP42-206ENST00000479544 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.51■□□□□ 0.07
USP42-206ENST00000479544 SHTN1A0MZ66 631 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 CTAGE15A4D2H0 777 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 CTAGE8P0CG41 777 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 METAP2P50579 478 aaKnown RBP eCLIP15.51■□□□□ 0.07
USP42-206ENST00000479544 CABP4P57796 275 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 TFCP2Q12800 502 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 CLEC17AQ6ZS10 378 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 DHX32Q7L7V1 743 aaKnown RBP15.51■□□□□ 0.07
USP42-206ENST00000479544 CTAGE6Q86UF2 777 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 CTAGE4Q8IX94 777 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 TRMT44Q8IYL2 757 aaKnown RBP15.51■□□□□ 0.07
USP42-206ENST00000479544 LSG1Q9H089 658 aaKnown RBP15.51■□□□□ 0.07
USP42-206ENST00000479544 EPC1Q9H2F5 836 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 KCNF1Q9H3M0 494 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 SLAIN2Q9P270 581 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 ABCF2Q9UG63 623 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 GUCA1BQ9UMX6 200 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 RGS12O14924 1447 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 WDHD1O75717 1129 aaPredicted RBP15.51■□□□□ 0.07
USP42-206ENST00000479544 CCDC144BQ3MJ40 725 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 NCBP3Q53F19 620 aaKnown RBP15.51■□□□□ 0.07
USP42-206ENST00000479544 UBAC1Q9BSL1 405 aa15.51■□□□□ 0.07
USP42-206ENST00000479544 MTX1Q13505 466 aa15.5■□□□□ 0.07
USP42-206ENST00000479544 MYO3AQ8NEV4 1616 aa15.5■□□□□ 0.07
USP42-206ENST00000479544 DBNDD2Q9BQY9 259 aa15.5■□□□□ 0.07
USP42-206ENST00000479544 LGR6Q9HBX8 967 aa15.5■□□□□ 0.07
USP42-206ENST00000479544 PHF8Q9UPP1 1060 aa15.5■□□□□ 0.07
USP42-206ENST00000479544 ZFYVE9O95405 1425 aa15.5■□□□□ 0.07
USP42-206ENST00000479544 TXLNAP40222 546 aa15.5■□□□□ 0.07
USP42-206ENST00000479544 TERF2Q15554 542 aa15.5■□□□□ 0.07
USP42-206ENST00000479544 BCCIPQ9P287 314 aaKnown RBP eCLIP15.5■□□□□ 0.07
USP42-206ENST00000479544 METTL24Q5JXM2 366 aa15.49■□□□□ 0.07
USP42-206ENST00000479544 AK9Q5TCS8 1911 aa15.49■□□□□ 0.07
USP42-206ENST00000479544 KDM5AP29375 1690 aaKnown RBP15.49■□□□□ 0.07
USP42-206ENST00000479544 PRC1O43663 620 aa15.49■□□□□ 0.07
USP42-206ENST00000479544 CCDC175P0C221 793 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms