RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 SLC27A3Q5K4L6 730 aa9.53□□□□□ -0.88
VMA21-203ENST00000477649 TTC39AQ5SRH9 613 aa9.53□□□□□ -0.88
VMA21-203ENST00000477649 FAM196AQ6ZSG2 479 aa9.53□□□□□ -0.88
VMA21-203ENST00000477649 LINC00116Q8NCU8 138 aa9.53□□□□□ -0.88
VMA21-203ENST00000477649 LPIN2Q92539 896 aa9.53□□□□□ -0.88
VMA21-203ENST00000477649 GREM2Q9H772 168 aa9.53□□□□□ -0.88
VMA21-203ENST00000477649 CCNL1Q9UK58 526 aaPredicted RBP9.53□□□□□ -0.88
VMA21-203ENST00000477649 RTCBQ9Y3I0 505 aaKnown RBP9.53□□□□□ -0.88
VMA21-203ENST00000477649 NUP98P52948 1817 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 DDX11L8A8MPP1 907 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 ZPR1O75312 459 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 KCNJ4P48050 445 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 NMIQ13287 307 aaPredicted RBP9.52□□□□□ -0.89
VMA21-203ENST00000477649 CUL4AQ13619 759 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 NBR1Q14596 966 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 NECTIN1Q15223 517 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 ANKRD1Q15327 319 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 VPS53Q5VIR6 699 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 USPL1Q5W0Q7 1092 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 CLEC17AQ6ZS10 378 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 SEPT12Q8IYM1 358 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 CHMP4CQ96CF2 233 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 XAGE2Q96GT9 111 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 ZNF594Q96JF6 807 aaPredicted RBP9.52□□□□□ -0.89
VMA21-203ENST00000477649 ZSCAN31Q96LW9 406 aaPredicted RBP9.52□□□□□ -0.89
VMA21-203ENST00000477649 HS3ST6Q96QI5 342 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 MPHOSPH8Q99549 860 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.52□□□□□ -0.89
VMA21-203ENST00000477649 ALDH8A1Q9H2A2 487 aaPredicted RBP9.52□□□□□ -0.89
VMA21-203ENST00000477649 SNX14Q9Y5W7 946 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.52□□□□□ -0.89
VMA21-203ENST00000477649 LRP5O75197 1615 aa9.52□□□□□ -0.89
VMA21-203ENST00000477649 TAF5LO75529 589 aa9.51□□□□□ -0.89
VMA21-203ENST00000477649 HMGB1P09429 215 aaKnown RBP9.51□□□□□ -0.89
VMA21-203ENST00000477649 SLC5A1P13866 664 aa9.51□□□□□ -0.89
VMA21-203ENST00000477649 TIMM10P62072 90 aa9.51□□□□□ -0.89
VMA21-203ENST00000477649 IRX5P78411 483 aaPredicted RBP9.51□□□□□ -0.89
VMA21-203ENST00000477649 RAB3GAP1Q15042 981 aa9.51□□□□□ -0.89
VMA21-203ENST00000477649 ZNF772Q68DY9 489 aaPredicted RBP9.51□□□□□ -0.89
VMA21-203ENST00000477649 TMED8Q6PL24 325 aaPredicted RBP9.51□□□□□ -0.89
VMA21-203ENST00000477649 VGLL2Q8N8G2 317 aa9.51□□□□□ -0.89
VMA21-203ENST00000477649 DNAJC2Q99543 621 aaKnown RBP9.51□□□□□ -0.89
VMA21-203ENST00000477649 SGIP1Q9BQI5 828 aa9.51□□□□□ -0.89
VMA21-203ENST00000477649 DSCC1Q9BVC3 393 aa9.51□□□□□ -0.89
VMA21-203ENST00000477649 PUS3Q9BZE2 481 aaKnown RBP9.51□□□□□ -0.89
VMA21-203ENST00000477649 QTRT2Q9H974 415 aaKnown RBP9.51□□□□□ -0.89
VMA21-203ENST00000477649 ZSWIM6Q9HCJ5 1215 aa9.51□□□□□ -0.89
VMA21-203ENST00000477649 SH2B1Q9NRF2 756 aaPredicted RBP9.51□□□□□ -0.89
VMA21-203ENST00000477649 CYP46A1Q9Y6A2 500 aa9.51□□□□□ -0.89
VMA21-203ENST00000477649 BCORQ6W2J9 1755 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 RIC1Q4ADV7 1423 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 GOLGA6L22H0YM25 854 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 RNF113AO15541 343 aaKnown RBP9.5□□□□□ -0.89
VMA21-203ENST00000477649 CD2BP2O95400 341 aaKnown RBP9.5□□□□□ -0.89
VMA21-203ENST00000477649 ZMYM1Q5SVZ6 1142 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 CREB3L3Q68CJ9 461 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 TPTE2Q6XPS3 522 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 FAM227BQ96M60 508 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 SETDB2Q96T68 719 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 CTNNA3Q9UI47 895 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 PALD1Q9ULE6 856 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 LIMCH1Q9UPQ0 1083 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.5□□□□□ -0.89
VMA21-203ENST00000477649 RBM8AQ9Y5S9 174 aaKnown RBP9.5□□□□□ -0.89
VMA21-203ENST00000477649 KAT6BQ8WYB5 2073 aa9.5□□□□□ -0.89
VMA21-203ENST00000477649 MYH3P11055 1940 aa9.49□□□□□ -0.89
VMA21-203ENST00000477649 A0A0D9SFI3 127 aa9.49□□□□□ -0.89
VMA21-203ENST00000477649 GOLIM4O00461 696 aa9.49□□□□□ -0.89
VMA21-203ENST00000477649 FGFR2P21802 821 aa9.49□□□□□ -0.89
VMA21-203ENST00000477649 GTF2E1P29083 439 aaPredicted RBP9.49□□□□□ -0.89
VMA21-203ENST00000477649 ARID4AP29374 1257 aaPredicted RBP9.49□□□□□ -0.89
VMA21-203ENST00000477649 MCM4P33991 863 aa9.49□□□□□ -0.89
VMA21-203ENST00000477649 SKOR2Q2VWA4 1001 aaPredicted RBP9.49□□□□□ -0.89
VMA21-203ENST00000477649 TRAPPC3LQ5T215 181 aa9.49□□□□□ -0.89
VMA21-203ENST00000477649 TMX3Q96JJ7 454 aa9.49□□□□□ -0.89
VMA21-203ENST00000477649 TTC14Q96N46 770 aa9.49□□□□□ -0.89
VMA21-203ENST00000477649 NLRP3Q96P20 1036 aa9.49□□□□□ -0.89
VMA21-203ENST00000477649 IL25Q9H293 177 aa9.49□□□□□ -0.89
VMA21-203ENST00000477649 LAMB2P55268 1798 aa9.49□□□□□ -0.89
VMA21-203ENST00000477649 SCN7AQ01118 1682 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 BTAF1O14981 1849 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 SLC27A2O14975 620 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 GNPATO15228 680 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 RFC4P35249 363 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 PTH1RQ03431 593 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 UBE3CQ15386 1083 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 PRPF40BQ6NWY9 871 aaKnown RBP9.48□□□□□ -0.89
VMA21-203ENST00000477649 DDX46Q7L014 1031 aaKnown RBP9.48□□□□□ -0.89
VMA21-203ENST00000477649 RUFY3Q7L099 469 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 KRT27Q7Z3Y8 459 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 ANKRD18AQ8IVF6 992 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 APPBP2Q92624 585 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 PDRG1Q9NUG6 133 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 GNL3LQ9NVN8 582 aaKnown RBP9.48□□□□□ -0.89
VMA21-203ENST00000477649 BSDC1Q9NW68 430 aaPredicted RBP9.48□□□□□ -0.89
VMA21-203ENST00000477649 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.48□□□□□ -0.89
VMA21-203ENST00000477649 RPAP1Q9BWH6 1393 aaPredicted RBP9.48□□□□□ -0.89
VMA21-203ENST00000477649 LY75O60449 1722 aa9.48□□□□□ -0.89
VMA21-203ENST00000477649 MYH14Q7Z406 1995 aaKnown RBP9.47□□□□□ -0.89
VMA21-203ENST00000477649 SEMA3EO15041 775 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms