RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 CCDC34Q96HJ3 373 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 GPR101Q96P66 508 aaPredicted RBP5.83□□□□□ -1.48
CCDC39-204ENST00000476379 TRIM34Q9BYJ4 488 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 CCNL1Q9UK58 526 aaPredicted RBP5.83□□□□□ -1.48
CCDC39-204ENST00000476379 CAMTA1Q9Y6Y1 1673 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 PLCD3Q8N3E9 789 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 MIGA1Q8NAN2 632 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 NOC3LQ8WTT2 800 aaKnown RBP5.83□□□□□ -1.48
CCDC39-204ENST00000476379 ARHGAP45Q92619 1136 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 NEK1Q96PY6 1258 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 SLC4A9Q96Q91 983 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 MAPK8IP1Q9UQF2 711 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 ARHGEF10O15013 1369 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 ZBTB22O15209 634 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 GTF2F1P35269 517 aaKnown RBP eCLIP5.83□□□□□ -1.48
CCDC39-204ENST00000476379 SF3A3Q12874 501 aaKnown RBP eCLIP5.83□□□□□ -1.48
CCDC39-204ENST00000476379 TRIM29Q14134 588 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 FAM196AQ6ZSG2 479 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 PHKBQ93100 1093 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 GDAP1L1Q96MZ0 367 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 DBF4Q9UBU7 674 aaPredicted RBP5.83□□□□□ -1.48
CCDC39-204ENST00000476379 NOL7Q9UMY1 257 aaKnown RBP5.83□□□□□ -1.48
CCDC39-204ENST00000476379 PTPRCP08575 1304 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 IL16Q14005 1332 aa5.83□□□□□ -1.48
CCDC39-204ENST00000476379 GRM8O00222 908 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 SKILP12757 684 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 AFMP43652 599 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 R3HDM1Q15032 1099 aaKnown RBP5.82□□□□□ -1.48
CCDC39-204ENST00000476379 KARSQ15046 597 aaKnown RBP5.82□□□□□ -1.48
CCDC39-204ENST00000476379 HLFQ16534 295 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 ZNF827Q17R98 1081 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 CCDC57Q2TAC2 916 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 INCENPQ9NQS7 918 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 TRPC5Q9UL62 973 aaPredicted RBP5.82□□□□□ -1.48
CCDC39-204ENST00000476379 SCAF8Q9UPN6 1271 aaKnown RBP5.82□□□□□ -1.48
CCDC39-204ENST00000476379 USP32Q8NFA0 1604 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 SGSM2O43147 1006 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 PRDM1O75626 825 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 BRD1O95696 1058 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 ITPK1Q13572 414 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 PTPN14Q15678 1187 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 IFT172Q9UG01 1749 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 JCADQ9P266 1359 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 LAMA2P24043 3122 aaKnown RBP5.82□□□□□ -1.48
CCDC39-204ENST00000476379 KLF18A0A0U1RQI7 1052 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 TPM4P67936 248 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 AKAP17AQ02040 695 aaKnown RBP5.82□□□□□ -1.48
CCDC39-204ENST00000476379 METTL24Q5JXM2 366 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 AIFM3Q96NN9 605 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 CARD10Q9BWT7 1032 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 EPC1Q9H2F5 836 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 ATG3Q9NT62 314 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 CEP126Q9P2H0 1117 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 ATP2B2Q01814 1243 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 AKAP4Q5JQC9 854 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 ANKRD13DQ6ZTN6 518 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 C8orf76Q96K31 380 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 SLC52A2Q9HAB3 445 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 ORC3Q9UBD5 711 aaPredicted RBP5.82□□□□□ -1.48
CCDC39-204ENST00000476379 DNAI1Q9UI46 699 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.82□□□□□ -1.48
CCDC39-204ENST00000476379 SPATA31A1Q5TZJ5 1347 aa5.82□□□□□ -1.48
CCDC39-204ENST00000476379 ROBO1Q9Y6N7 1651 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 MAP2P11137 1827 aaKnown RBP5.81□□□□□ -1.48
CCDC39-204ENST00000476379 SLC27A2O14975 620 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 PDCP20941 246 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 NAP1L1P55209 391 aaKnown RBP5.81□□□□□ -1.48
CCDC39-204ENST00000476379 SYT10Q6XYQ8 523 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 TRMT44Q8IYL2 757 aaKnown RBP5.81□□□□□ -1.48
CCDC39-204ENST00000476379 BCL2L12Q9HB09 334 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 CBX8Q9HC52 389 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 LRRC4BQ9NT99 713 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 LRP6O75581 1613 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 MAP3K5Q99683 1374 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 ECM2O94769 699 aaPredicted RBP5.81□□□□□ -1.48
CCDC39-204ENST00000476379 SF3B2Q13435 895 aaKnown RBP5.81□□□□□ -1.48
CCDC39-204ENST00000476379 CCDC171Q6TFL3 1326 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 LOC102724428A0A0B4J2F2 783 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 PTPDC1A2A3K4 754 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 SIK1P57059 783 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 PUS3Q9BZE2 481 aaKnown RBP5.81□□□□□ -1.48
CCDC39-204ENST00000476379 IFNKQ9P0W0 207 aa5.81□□□□□ -1.48
CCDC39-204ENST00000476379 TAF5LO75529 589 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 TDO2P48775 406 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 EIF4A1P60842 406 aaKnown RBP5.8□□□□□ -1.48
CCDC39-204ENST00000476379 ELF2Q15723 593 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 EPHA10Q5JZY3 1008 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 FBXO41Q8TF61 875 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 EVI5LQ96CN4 794 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 MYOM1P52179 1685 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 CCDC69A6NI79 296 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 NBPF26B4DH59 902 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 CCDC158Q5M9N0 1113 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 NBPF14Q5TI25 921 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 NBPF10Q6P3W6 841 aaKnown RBP5.8□□□□□ -1.48
CCDC39-204ENST00000476379 CEP57L1Q8IYX8 460 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 NBPF15Q8N660 670 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 DRC1Q96MC2 740 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 SLC26A6Q9BXS9 759 aa5.8□□□□□ -1.48
CCDC39-204ENST00000476379 ST7Q9NRC1 585 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms