RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 MRE11P49959 708 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 FAM98CQ17RN3 349 aaKnown RBP11.7□□□□□ -0.54
USP39-214ENST00000474572 STOX1Q6ZVD7 989 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 CCDC83Q8IWF9 413 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 FBXL16Q8N461 479 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 LINC00116Q8NCU8 138 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 APPBP2Q92624 585 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 OSBP2Q969R2 916 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 ARXQ96QS3 562 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 GZF1Q9H116 711 aaPredicted RBP11.7□□□□□ -0.54
USP39-214ENST00000474572 CNNM1Q9NRU3 951 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 TCHHQ07283 1943 aa11.7□□□□□ -0.54
USP39-214ENST00000474572 TIAM2Q8IVF5 1701 aa11.69□□□□□ -0.54
USP39-214ENST00000474572 MYH15Q9Y2K3 1946 aa11.69□□□□□ -0.54
USP39-214ENST00000474572 FOXP2O15409 715 aa11.69□□□□□ -0.54
USP39-214ENST00000474572 STX6O43752 255 aa11.69□□□□□ -0.54
USP39-214ENST00000474572 MBD3O95983 291 aa11.69□□□□□ -0.54
USP39-214ENST00000474572 F13A1P00488 732 aa11.69□□□□□ -0.54
USP39-214ENST00000474572 HMGB1P09429 215 aaKnown RBP11.69□□□□□ -0.54
USP39-214ENST00000474572 GJB2P29033 226 aa11.69□□□□□ -0.54
USP39-214ENST00000474572 MCAMP43121 646 aa11.69□□□□□ -0.54
USP39-214ENST00000474572 PUM3Q15397 648 aaKnown RBP11.69□□□□□ -0.54
USP39-214ENST00000474572 RC3H1Q5TC82 1133 aaKnown RBP11.69□□□□□ -0.54
USP39-214ENST00000474572 GPT2Q8TD30 523 aa11.69□□□□□ -0.54
USP39-214ENST00000474572 LPIN2Q92539 896 aa11.69□□□□□ -0.54
USP39-214ENST00000474572 ZNF652Q9Y2D9 606 aa11.69□□□□□ -0.54
USP39-214ENST00000474572 PRPF40AO75400 957 aaKnown RBP11.68□□□□□ -0.54
USP39-214ENST00000474572 UQCRFS1P1P0C7P4 283 aa11.68□□□□□ -0.54
USP39-214ENST00000474572 XRCC6P12956 609 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP39-214ENST00000474572 ADD2P35612 726 aa11.68□□□□□ -0.54
USP39-214ENST00000474572 EXOSC10Q01780 885 aaKnown RBP11.68□□□□□ -0.54
USP39-214ENST00000474572 TTF1Q15361 905 aaPredicted RBP11.68□□□□□ -0.54
USP39-214ENST00000474572 SLFNL1Q499Z3 407 aa11.68□□□□□ -0.54
USP39-214ENST00000474572 GORABQ5T7V8 394 aa11.68□□□□□ -0.54
USP39-214ENST00000474572 GAS2L3Q86XJ1 694 aa11.68□□□□□ -0.54
USP39-214ENST00000474572 NGLY1Q96IV0 654 aa11.68□□□□□ -0.54
USP39-214ENST00000474572 C8orf37Q96NL8 207 aa11.68□□□□□ -0.54
USP39-214ENST00000474572 LARP6Q9BRS8 491 aaKnown RBP11.68□□□□□ -0.54
USP39-214ENST00000474572 MTMR6Q9Y217 621 aa11.68□□□□□ -0.54
USP39-214ENST00000474572 HCLS1P14317 486 aaPredicted RBP11.67□□□□□ -0.54
USP39-214ENST00000474572 FKBP4Q02790 459 aaKnown RBP eCLIP11.67□□□□□ -0.54
USP39-214ENST00000474572 CCDC152Q4G0S7 254 aa11.67□□□□□ -0.54
USP39-214ENST00000474572 CCDC102BQ68D86 513 aa11.67□□□□□ -0.54
USP39-214ENST00000474572 ZSCAN25Q6NSZ9 544 aa11.67□□□□□ -0.54
USP39-214ENST00000474572 DHX32Q7L7V1 743 aaKnown RBP11.67□□□□□ -0.54
USP39-214ENST00000474572 GTF3C6Q969F1 213 aa11.67□□□□□ -0.54
USP39-214ENST00000474572 GRPEL1Q9HAV7 217 aa11.67□□□□□ -0.54
USP39-214ENST00000474572 NIP7Q9Y221 180 aaKnown RBP eCLIP11.67□□□□□ -0.54
USP39-214ENST00000474572 E7EWF7 191 aa11.66□□□□□ -0.54
USP39-214ENST00000474572 SLC5A1P13866 664 aa11.66□□□□□ -0.54
USP39-214ENST00000474572 PHKA1P46020 1223 aa11.66□□□□□ -0.54
USP39-214ENST00000474572 UBE3CQ15386 1083 aa11.66□□□□□ -0.54
USP39-214ENST00000474572 SF3B3Q15393 1217 aaKnown RBP11.66□□□□□ -0.54
USP39-214ENST00000474572 NECAB1Q8N987 351 aa11.66□□□□□ -0.54
USP39-214ENST00000474572 SMARCC2Q8TAQ2 1214 aa11.66□□□□□ -0.54
USP39-214ENST00000474572 CHAMP1Q96JM3 812 aa11.66□□□□□ -0.54
USP39-214ENST00000474572 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.66□□□□□ -0.541e-6■■■□□ 14.8
USP39-214ENST00000474572 ATP6V1DQ9Y5K8 247 aa11.66□□□□□ -0.54
USP39-214ENST00000474572 CHD4Q14839 1912 aa11.66□□□□□ -0.54
USP39-214ENST00000474572 ZMYM6O95789 1325 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 TCRBV5S4A2TA0A5A2 114 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 ONECUT3O60422 494 aaPredicted RBP11.65□□□□□ -0.54
USP39-214ENST00000474572 RPS6KA4O75676 772 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 PDCP20941 246 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 EVCP57679 992 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 ZSCAN23Q3MJ62 389 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 SLC10A5Q5PT55 438 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 FOXD4L5Q5VV16 416 aaPredicted RBP11.65□□□□□ -0.54
USP39-214ENST00000474572 PI16Q6UXB8 463 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 Q6ZUG5 572 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 KLHL34Q8N239 644 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 FOXD4L4Q8WXT5 416 aaPredicted RBP11.65□□□□□ -0.54
USP39-214ENST00000474572 TCEANC2Q96MN5 208 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 LLPHQ9BRT6 129 aaKnown RBP11.65□□□□□ -0.54
USP39-214ENST00000474572 PUS7LQ9H0K6 701 aaKnown RBP11.65□□□□□ -0.54
USP39-214ENST00000474572 BCL2L12Q9HB09 334 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 SEC31BQ9NQW1 1179 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 CTNNA3Q9UI47 895 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 USP21Q9UK80 565 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 BRPF3Q9ULD4 1205 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 KIAA1551Q9HCM1 1747 aa11.65□□□□□ -0.54
USP39-214ENST00000474572 WDR19Q8NEZ3 1342 aa11.64□□□□□ -0.55
USP39-214ENST00000474572 A0A0G2JS52 829 aa11.64□□□□□ -0.55
USP39-214ENST00000474572 ZBTB22O15209 634 aa11.64□□□□□ -0.55
USP39-214ENST00000474572 GPAA1O43292 621 aa11.64□□□□□ -0.55
USP39-214ENST00000474572 PFKFB2O60825 505 aa11.64□□□□□ -0.55
USP39-214ENST00000474572 IGHMBP2P38935 993 aaKnown RBP11.64□□□□□ -0.55
USP39-214ENST00000474572 CAVIN1Q6NZI2 390 aaKnown RBP11.64□□□□□ -0.55
USP39-214ENST00000474572 PIH1D3Q9NQM4 214 aaKnown RBP11.64□□□□□ -0.55
USP39-214ENST00000474572 TMEM63CQ9P1W3 806 aa11.64□□□□□ -0.55
USP39-214ENST00000474572 NARFQ9UHQ1 456 aa11.64□□□□□ -0.55
USP39-214ENST00000474572 NSFL1CQ9UNZ2 370 aaKnown RBP11.64□□□□□ -0.55
USP39-214ENST00000474572 TNRC6CQ9HCJ0 1690 aaKnown RBP11.64□□□□□ -0.55
USP39-214ENST00000474572 MAST2Q6P0Q8 1798 aa11.64□□□□□ -0.55
USP39-214ENST00000474572 TAF1P21675 1872 aa11.63□□□□□ -0.55
USP39-214ENST00000474572 UBR3Q6ZT12 1888 aa11.63□□□□□ -0.55
USP39-214ENST00000474572 ZNF804BA4D1E1 1349 aa11.63□□□□□ -0.55
USP39-214ENST00000474572 MYH13Q9UKX3 1938 aa11.63□□□□□ -0.55
USP39-214ENST00000474572 A0A0G2JLW4 131 aa11.63□□□□□ -0.55
USP39-214ENST00000474572 USP48Q86UV5 1035 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms