RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 USP17L3A6NCW0 530 aa22.6■■□□□ 1.21
UPF3A-203ENST00000474056 USP17L4A6NCW7 530 aa22.6■■□□□ 1.21
UPF3A-203ENST00000474056 TRAF5O00463 557 aa22.6■■□□□ 1.21
UPF3A-203ENST00000474056 KCNJ4P48050 445 aa22.6■■□□□ 1.21
UPF3A-203ENST00000474056 RABL6Q3YEC7 729 aaPredicted RBP22.6■■□□□ 1.21
UPF3A-203ENST00000474056 LDHAL6AQ6ZMR3 332 aa22.6■■□□□ 1.21
UPF3A-203ENST00000474056 USP17L1Q7RTZ2 530 aa22.6■■□□□ 1.21
UPF3A-203ENST00000474056 ANKRD44Q8N8A2 993 aa22.6■■□□□ 1.21
UPF3A-203ENST00000474056 AGBL3Q8NEM8 1001 aa22.6■■□□□ 1.21
UPF3A-203ENST00000474056 COA1Q9GZY4 146 aa22.6■■□□□ 1.21
UPF3A-203ENST00000474056 CNTNAP1P78357 1384 aa22.6■■□□□ 1.21
UPF3A-203ENST00000474056 PCNTO95613 3336 aa22.6■■□□□ 1.21
UPF3A-203ENST00000474056 IRS2Q9Y4H2 1338 aa22.59■■□□□ 1.21
UPF3A-203ENST00000474056 ZC3H15Q8WU90 426 aaKnown RBP22.59■■□□□ 1.21
UPF3A-203ENST00000474056 GLIS2Q9BZE0 524 aaPredicted RBP22.59■■□□□ 1.21
UPF3A-203ENST00000474056 CNNM1Q9NRU3 951 aa22.59■■□□□ 1.21
UPF3A-203ENST00000474056 KIF4BQ2VIQ3 1234 aa22.58■■□□□ 1.21
UPF3A-203ENST00000474056 RBM26Q5T8P6 1007 aaKnown RBP22.58■■□□□ 1.21
UPF3A-203ENST00000474056 GMLQ99445 158 aa22.58■■□□□ 1.21
UPF3A-203ENST00000474056 PUS3Q9BZE2 481 aaKnown RBP22.58■■□□□ 1.21
UPF3A-203ENST00000474056 FBXW7Q969H0 707 aa22.57■■□□□ 1.2
UPF3A-203ENST00000474056 MXD3Q9BW11 206 aa22.57■■□□□ 1.2
UPF3A-203ENST00000474056 PLIN1O60240 522 aa22.56■■□□□ 1.2
UPF3A-203ENST00000474056 API5Q9BZZ5 524 aaKnown RBP22.56■■□□□ 1.2
UPF3A-203ENST00000474056 ZNF280AP59817 542 aaPredicted RBP22.55■■□□□ 1.2
UPF3A-203ENST00000474056 DACT2Q5SW24 774 aa22.55■■□□□ 1.2
UPF3A-203ENST00000474056 CST9Q5W186 159 aa22.55■■□□□ 1.2
UPF3A-203ENST00000474056 KIF16BQ96L93 1317 aa22.55■■□□□ 1.2
UPF3A-203ENST00000474056 STRIP1Q5VSL9 837 aa22.54■■□□□ 1.2
UPF3A-203ENST00000474056 C15orf52Q6ZUT6 534 aaKnown RBP22.54■■□□□ 1.2
UPF3A-203ENST00000474056 CDC37L1Q7L3B6 337 aa22.54■■□□□ 1.2
UPF3A-203ENST00000474056 CD209Q9NNX6 404 aa22.54■■□□□ 1.2
UPF3A-203ENST00000474056 ABT1Q9ULW3 272 aaKnown RBP22.54■■□□□ 1.2
UPF3A-203ENST00000474056 USP17L8P0C7I0 530 aa22.53■■□□□ 1.2
UPF3A-203ENST00000474056 TTLL5Q6EMB2 1281 aa22.53■■□□□ 1.2
UPF3A-203ENST00000474056 KLHDC4Q8TBB5 520 aa22.53■■□□□ 1.2
UPF3A-203ENST00000474056 RIPOR2Q9Y4F9 1068 aa22.53■■□□□ 1.2
UPF3A-203ENST00000474056 ASTN2O75129 1339 aaPredicted RBP22.53■■□□□ 1.2
UPF3A-203ENST00000474056 RASSF10A6NK89 507 aa22.52■■□□□ 1.2
UPF3A-203ENST00000474056 CELF2O95319 508 aaKnown RBP22.52■■□□□ 1.2
UPF3A-203ENST00000474056 VEGFBP49765 207 aa22.52■■□□□ 1.2
UPF3A-203ENST00000474056 LRRC24Q50LG9 513 aa22.52■■□□□ 1.2
UPF3A-203ENST00000474056 DLK2Q6UY11 383 aa22.52■■□□□ 1.2
UPF3A-203ENST00000474056 USP48Q86UV5 1035 aa22.52■■□□□ 1.2
UPF3A-203ENST00000474056 BCAR3O75815 825 aa22.51■■□□□ 1.19
UPF3A-203ENST00000474056 GTF2IP78347 998 aa22.51■■□□□ 1.19
UPF3A-203ENST00000474056 DEFB115Q30KQ5 88 aa22.51■■□□□ 1.19
UPF3A-203ENST00000474056 ARHGAP45Q92619 1136 aa22.51■■□□□ 1.19
UPF3A-203ENST00000474056 MYOZ2Q9NPC6 264 aa22.51■■□□□ 1.19
UPF3A-203ENST00000474056 GGA3Q9NZ52 723 aa22.51■■□□□ 1.19
UPF3A-203ENST00000474056 MYO3BQ8WXR4 1341 aa22.51■■□□□ 1.19
UPF3A-203ENST00000474056 UBTFL1P0CB47 393 aaPredicted RBP22.5■■□□□ 1.19
UPF3A-203ENST00000474056 UBE4AQ14139 1066 aa22.5■■□□□ 1.19
UPF3A-203ENST00000474056 KRT26Q7Z3Y9 468 aa22.5■■□□□ 1.19
UPF3A-203ENST00000474056 ZNF804AQ7Z570 1209 aa22.5■■□□□ 1.19
UPF3A-203ENST00000474056 DCPSQ96C86 337 aaKnown RBP22.5■■□□□ 1.19
UPF3A-203ENST00000474056 ZNF408Q9H9D4 720 aa22.5■■□□□ 1.19
UPF3A-203ENST00000474056 ARAP2Q8WZ64 1704 aa22.5■■□□□ 1.19
UPF3A-203ENST00000474056 MROH5Q6ZUA9 1318 aa22.5■■□□□ 1.19
UPF3A-203ENST00000474056 ECM29Q5VYK3 1845 aa22.5■■□□□ 1.19
UPF3A-203ENST00000474056 ADM5C9JUS6 153 aa22.49■■□□□ 1.19
UPF3A-203ENST00000474056 IL1R1P14778 569 aa22.49■■□□□ 1.19
UPF3A-203ENST00000474056 RFX5P48382 616 aaPredicted RBP22.49■■□□□ 1.19
UPF3A-203ENST00000474056 SCARF1Q14162 830 aa22.49■■□□□ 1.19
UPF3A-203ENST00000474056 TNNQ9UQP3 1299 aa22.49■■□□□ 1.19
UPF3A-203ENST00000474056 TLL2Q9Y6L7 1015 aa22.49■■□□□ 1.19
UPF3A-203ENST00000474056 ZBED9Q6R2W3 1325 aa22.49■■□□□ 1.19
UPF3A-203ENST00000474056 MYH13Q9UKX3 1938 aa22.49■■□□□ 1.19
UPF3A-203ENST00000474056 HSPA1AP0DMV8 641 aaKnown RBP22.48■■□□□ 1.19
UPF3A-203ENST00000474056 HSPA1BP0DMV9 641 aaKnown RBP22.48■■□□□ 1.19
UPF3A-203ENST00000474056 MEIS3Q99687 375 aa22.48■■□□□ 1.19
UPF3A-203ENST00000474056 THSD7BQ9C0I4 1608 aa22.48■■□□□ 1.19
UPF3A-203ENST00000474056 TRIM27P14373 513 aa22.47■■□□□ 1.19
UPF3A-203ENST00000474056 METTL24Q5JXM2 366 aa22.47■■□□□ 1.19
UPF3A-203ENST00000474056 ANGEL2Q5VTE6 544 aaKnown RBP22.47■■□□□ 1.19
UPF3A-203ENST00000474056 INTS3Q68E01 1043 aaKnown RBP22.47■■□□□ 1.19
UPF3A-203ENST00000474056 KIAA0825Q8IV33 1275 aa22.47■■□□□ 1.19
UPF3A-203ENST00000474056 VGLL2Q8N8G2 317 aa22.47■■□□□ 1.19
UPF3A-203ENST00000474056 FRAT1Q92837 279 aaPredicted RBP22.47■■□□□ 1.19
UPF3A-203ENST00000474056 GYG1P46976 350 aa22.46■■□□□ 1.19
UPF3A-203ENST00000474056 PTPN12Q05209 780 aaKnown RBP22.46■■□□□ 1.19
UPF3A-203ENST00000474056 OGFOD1Q8N543 542 aa22.46■■□□□ 1.19
UPF3A-203ENST00000474056 CERS5Q8N5B7 392 aa22.46■■□□□ 1.19
UPF3A-203ENST00000474056 JAG2Q9Y219 1238 aa22.46■■□□□ 1.19
UPF3A-203ENST00000474056 LRRFIP2Q9Y608 721 aaKnown RBP22.46■■□□□ 1.19
UPF3A-203ENST00000474056 NBPF9Q3BBW0 867 aa22.45■■□□□ 1.18
UPF3A-203ENST00000474056 ATF7IPQ6VMQ6 1270 aa22.45■■□□□ 1.18
UPF3A-203ENST00000474056 PAXIP1Q6ZW49 1069 aaPredicted RBP22.45■■□□□ 1.18
UPF3A-203ENST00000474056 SAPCD2Q86UD0 394 aa22.45■■□□□ 1.18
UPF3A-203ENST00000474056 FAM84BQ96KN1 310 aaPredicted RBP22.45■■□□□ 1.18
UPF3A-203ENST00000474056 WDR33Q9C0J8 1336 aaKnown RBP22.45■■□□□ 1.18
UPF3A-203ENST00000474056 IPO8O15397 1037 aaKnown RBP22.44■■□□□ 1.18
UPF3A-203ENST00000474056 CYP4F22Q6NT55 531 aa22.44■■□□□ 1.18
UPF3A-203ENST00000474056 SULF1Q8IWU6 871 aa22.44■■□□□ 1.18
UPF3A-203ENST00000474056 SCAF8Q9UPN6 1271 aaKnown RBP22.44■■□□□ 1.18
UPF3A-203ENST00000474056 PITPNM2Q9BZ72 1349 aa22.43■■□□□ 1.18
UPF3A-203ENST00000474056 EYA2O00167 538 aa22.43■■□□□ 1.18
UPF3A-203ENST00000474056 WNT10BO00744 389 aa22.43■■□□□ 1.18
UPF3A-203ENST00000474056 SASH1O94885 1247 aa22.43■■□□□ 1.18
UPF3A-203ENST00000474056 PDE8BO95263 885 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms