RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 DCPSQ96C86 337 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-205ENST00000472524 ZNF646O15015 1829 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-205ENST00000472524 CSF1RP07333 972 aa19.95■□□□□ 0.78
CCDC88B-205ENST00000472524 CCT4P50991 539 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-205ENST00000472524 MPHOSPH8Q99549 860 aa19.95■□□□□ 0.78
CCDC88B-205ENST00000472524 CHMP3Q9Y3E7 222 aa19.95■□□□□ 0.78
CCDC88B-205ENST00000472524 MED23Q9ULK4 1368 aa19.95■□□□□ 0.78
CCDC88B-205ENST00000472524 E9PSI1 815 aa19.94■□□□□ 0.78
CCDC88B-205ENST00000472524 NOGQ13253 232 aa19.94■□□□□ 0.78
CCDC88B-205ENST00000472524 GBA2Q9HCG7 927 aaPredicted RBP19.94■□□□□ 0.78
CCDC88B-205ENST00000472524 GGA3Q9NZ52 723 aa19.94■□□□□ 0.78
CCDC88B-205ENST00000472524 ANKRD18BA2A2Z9 1011 aa19.93■□□□□ 0.78
CCDC88B-205ENST00000472524 CCDC85CA6NKD9 419 aa19.93■□□□□ 0.78
CCDC88B-205ENST00000472524 FAM155AB1AL88 458 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-205ENST00000472524 GRM8O00222 908 aa19.93■□□□□ 0.78
CCDC88B-205ENST00000472524 RGMBQ6NW40 437 aa19.93■□□□□ 0.78
CCDC88B-205ENST00000472524 ZNF280AP59817 542 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-205ENST00000472524 FOXO4P98177 505 aa19.92■□□□□ 0.78
CCDC88B-205ENST00000472524 RSBN1LQ6PCB5 846 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-205ENST00000472524 C2orf69Q8N8R5 385 aa19.92■□□□□ 0.78
CCDC88B-205ENST00000472524 C9orf78Q9NZ63 289 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-205ENST00000472524 SLFN5Q08AF3 891 aa19.91■□□□□ 0.78
CCDC88B-205ENST00000472524 IFIT5Q13325 482 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-205ENST00000472524 PODNQ7Z5L7 613 aa19.91■□□□□ 0.78
CCDC88B-205ENST00000472524 SULF1Q8IWU6 871 aa19.91■□□□□ 0.78
CCDC88B-205ENST00000472524 MRPL50Q8N5N7 158 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-205ENST00000472524 FBXW7Q969H0 707 aa19.91■□□□□ 0.78
CCDC88B-205ENST00000472524 SRCIN1Q9C0H9 1055 aa19.91■□□□□ 0.78
CCDC88B-205ENST00000472524 ANKRD2Q9GZV1 360 aa19.91■□□□□ 0.78
CCDC88B-205ENST00000472524 LEMD3Q9Y2U8 911 aa19.91■□□□□ 0.78
CCDC88B-205ENST00000472524 USP17L3A6NCW0 530 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 USP17L4A6NCW7 530 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 ALDH1L1O75891 902 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 KCNJ4P48050 445 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 SCARF1Q14162 830 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 EPHA10Q5JZY3 1008 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 LMBR1LQ6UX01 489 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 USP17L1Q7RTZ2 530 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 AGBL3Q8NEM8 1001 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 CDCA5Q96FF9 252 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 CDCA7LQ96GN5 454 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 ZNF804BA4D1E1 1349 aa19.9■□□□□ 0.78
CCDC88B-205ENST00000472524 ZNF609O15014 1411 aa19.89■□□□□ 0.77
CCDC88B-205ENST00000472524 KLRK1P26718 216 aa19.89■□□□□ 0.77
CCDC88B-205ENST00000472524 ZNF157P51786 506 aaPredicted RBP19.89■□□□□ 0.77
CCDC88B-205ENST00000472524 CHRNDQ07001 517 aa19.89■□□□□ 0.77
CCDC88B-205ENST00000472524 ANGEL2Q5VTE6 544 aaKnown RBP19.89■□□□□ 0.77
CCDC88B-205ENST00000472524 TXNRD3Q86VQ6 643 aa19.89■□□□□ 0.77
CCDC88B-205ENST00000472524 GMLQ99445 158 aa19.89■□□□□ 0.77
CCDC88B-205ENST00000472524 MCOLN1Q9GZU1 580 aa19.89■□□□□ 0.77
CCDC88B-205ENST00000472524 CCER2I3L3R5 266 aa19.88■□□□□ 0.77
CCDC88B-205ENST00000472524 KIF23Q02241 960 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-205ENST00000472524 TAF7LQ5H9L4 462 aa19.88■□□□□ 0.77
CCDC88B-205ENST00000472524 SSH1Q8WYL5 1049 aa19.88■□□□□ 0.77
CCDC88B-205ENST00000472524 CCDC102AQ96A19 550 aa19.88■□□□□ 0.77
CCDC88B-205ENST00000472524 USP17L8P0C7I0 530 aa19.87■□□□□ 0.77
CCDC88B-205ENST00000472524 CCDC57Q2TAC2 916 aa19.87■□□□□ 0.77
CCDC88B-205ENST00000472524 HELBQ8NG08 1087 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-205ENST00000472524 ZNF594Q96JF6 807 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-205ENST00000472524 MXD3Q9BW11 206 aa19.87■□□□□ 0.77
CCDC88B-205ENST00000472524 COA1Q9GZY4 146 aa19.87■□□□□ 0.77
CCDC88B-205ENST00000472524 MYOZ2Q9NPC6 264 aa19.87■□□□□ 0.77
CCDC88B-205ENST00000472524 SCAF8Q9UPN6 1271 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-205ENST00000472524 SNAP23O00161 211 aa19.86■□□□□ 0.77
CCDC88B-205ENST00000472524 TAF5LO75529 589 aa19.86■□□□□ 0.77
CCDC88B-205ENST00000472524 SLC10A3P09131 477 aa19.86■□□□□ 0.77
CCDC88B-205ENST00000472524 DGKZQ13574 1117 aa19.86■□□□□ 0.77
CCDC88B-205ENST00000472524 SUCLG2Q96I99 432 aa19.86■□□□□ 0.77
CCDC88B-205ENST00000472524 PTPRCP08575 1304 aa19.85■□□□□ 0.77
CCDC88B-205ENST00000472524 NBPF7P0C2Y1 421 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-205ENST00000472524 DACT2Q5SW24 774 aa19.84■□□□□ 0.77
CCDC88B-205ENST00000472524 CNNM1Q9NRU3 951 aa19.84■□□□□ 0.77
CCDC88B-205ENST00000472524 RNF186Q9NXI6 227 aa19.84■□□□□ 0.77
CCDC88B-205ENST00000472524 PLIN1O60240 522 aa19.83■□□□□ 0.77
CCDC88B-205ENST00000472524 STRIP1Q5VSL9 837 aa19.83■□□□□ 0.77
CCDC88B-205ENST00000472524 LDHAL6AQ6ZMR3 332 aa19.83■□□□□ 0.77
CCDC88B-205ENST00000472524 SMC4Q9NTJ3 1288 aa19.83■□□□□ 0.77
CCDC88B-205ENST00000472524 SAGE1Q9NXZ1 904 aa19.83■□□□□ 0.77
CCDC88B-205ENST00000472524 TRPA1O75762 1119 aa19.82■□□□□ 0.76
CCDC88B-205ENST00000472524 RGS19P49795 217 aa19.82■□□□□ 0.76
CCDC88B-205ENST00000472524 NBPF9Q3BBW0 867 aa19.82■□□□□ 0.76
CCDC88B-205ENST00000472524 PRAMEF18Q5VWM3 479 aa19.82■□□□□ 0.76
CCDC88B-205ENST00000472524 TTLL5Q6EMB2 1281 aa19.82■□□□□ 0.76
CCDC88B-205ENST00000472524 MOB2Q70IA6 237 aa19.82■□□□□ 0.76
CCDC88B-205ENST00000472524 RASAL3Q86YV0 1011 aa19.82■□□□□ 0.76
CCDC88B-205ENST00000472524 KAZALD1Q96I82 304 aa19.82■□□□□ 0.76
CCDC88B-205ENST00000472524 CSRNP1Q96S65 589 aa19.82■□□□□ 0.76
CCDC88B-205ENST00000472524 UTYO14607 1347 aa19.81■□□□□ 0.76
CCDC88B-205ENST00000472524 MYO3BQ8WXR4 1341 aa19.81■□□□□ 0.76
CCDC88B-205ENST00000472524 PITPNM2Q9BZ72 1349 aa19.81■□□□□ 0.76
CCDC88B-205ENST00000472524 GTF2IP78347 998 aa19.81■□□□□ 0.76
CCDC88B-205ENST00000472524 MLLT1Q03111 559 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-205ENST00000472524 ALDH1L2Q3SY69 923 aa19.81■□□□□ 0.76
CCDC88B-205ENST00000472524 TRMT2AQ8IZ69 625 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-205ENST00000472524 BICC1Q9H694 974 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-205ENST00000472524 CD209Q9NNX6 404 aa19.81■□□□□ 0.76
CCDC88B-205ENST00000472524 IRS2Q9Y4H2 1338 aa19.8■□□□□ 0.76
CCDC88B-205ENST00000472524 OGFOD1Q8N543 542 aa19.8■□□□□ 0.76
CCDC88B-205ENST00000472524 ECM29Q5VYK3 1845 aa19.8■□□□□ 0.76
CCDC88B-205ENST00000472524 FKBP1BP68106 108 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms