RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	RIC8A	Q9NPQ8	531 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	GINM1	Q9NU53	330 aa		3.9	□□□□□ -1.79
TTC3-214	ENST00000472398	KIF3B	O15066	747 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	ZPR1	O75312	459 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	INMT	O95050	263 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	P4HB	P07237	508 aa	Known RBP	3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	MYL3	P08590	195 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	HCLS1	P14317	486 aa	Predicted RBP	3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	POU3F3	P20264	500 aa	Predicted RBP	3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	ENPP1	P22413	925 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	MAPK1	P28482	360 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	ZNF131	P52739	623 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	ECM1	Q16610	540 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	FAM83B	Q5T0W9	1011 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	IQCF2	Q8IXL9	164 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	PHC3	Q8NDX5	983 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	LRRN4	Q8WUT4	740 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	SNX21	Q969T3	373 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	SH3KBP1	Q96B97	665 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	CENPT	Q96BT3	561 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	ASB16	Q96NS5	453 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	MAFF	Q9ULX9	164 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	SHTN1	A0MZ66	631 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398		H3BRB1	525 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	PER1	O15534	1290 aa	Predicted RBP	3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	CAND2	O75155	1236 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	ADH1B	P00325	375 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	NOS2	P35228	1153 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	RACK1	P63244	317 aa	Known RBP	3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	ZNF713	Q8N859	430 aa	Predicted RBP	3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	ZFPM2	Q8WW38	1151 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	PAWR	Q96IZ0	340 aa	Known RBP	3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	TTC14	Q96N46	770 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	TUT1	Q9H6E5	874 aa	Known RBP	3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	IL21	Q9HBE4	155 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	HOMER2	Q9NSB8	354 aa		3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	RBM28	Q9NW13	759 aa	Known RBP	3.89	□□□□□ -1.79
TTC3-214	ENST00000472398	FAM221B	A6H8Z2	402 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	CHL1	O00533	1208 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	PRPF3	O43395	683 aa	Known RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	FIBP	O43427	364 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	ALDH1L1	O75891	902 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	ITGBL1	O95965	494 aa	Predicted RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	MYL1	P05976	194 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	EPB42	P16452	691 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	IL4R	P24394	825 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	OAS2	P29728	719 aa	Known RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	BPIFB3	P59826	476 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	EXOSC10	Q01780	885 aa	Known RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	CCDC15	Q0P6D6	951 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	TTF1	Q15361	905 aa	Predicted RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	FXN	Q16595	210 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	ANKRD45	Q5TZF3	282 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	IFNL3	Q8IZI9	196 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	JPH3	Q8WXH2	748 aa	Predicted RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	RELT	Q969Z4	430 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	TRIM52	Q96A61	297 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	ZNF496	Q96IT1	587 aa	Predicted RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	MTR	Q99707	1265 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	NGRN	Q9NPE2	291 aa	Known RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	FANCL	Q9NW38	375 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	CGN	Q9P2M7	1197 aa	Known RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	NOVA2	Q9UNW9	492 aa	Known RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	PRKAB1	Q9Y478	270 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	DAAM1	Q9Y4D1	1078 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	HTATSF1	O43719	755 aa	Known RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	DIAPH1	O60610	1272 aa	Known RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	VAMP4	O75379	141 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	RHOBTB3	O94955	611 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	ABCD1	P33897	745 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	ARID5A	Q03989	594 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	EAPP	Q56P03	285 aa	Predicted RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	CT47A1	Q5JQC4	288 aa	Predicted RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	IQCE	Q6IPM2	695 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	ZNF449	Q6P9G9	518 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	UNC5D	Q6UXZ4	953 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	LCA5	Q86VQ0	697 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	ARHGEF25	Q86VW2	580 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	SAMD14	Q8IZD0	417 aa	Predicted RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	SPICE1	Q8N0Z3	855 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	FLCN	Q8NFG4	579 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	IPCEF1	Q8WWN9	437 aa	Predicted RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	PGBD4	Q96DM1	585 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	TBC1D31	Q96DN5	1066 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	MRFAP1L1	Q96HT8	127 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	FMNL2	Q96PY5	1086 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	SPSB2	Q99619	263 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	ABCG4	Q9H172	646 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	SUDS3	Q9H7L9	328 aa	Predicted RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	COMMD8	Q9NX08	183 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	TBK1	Q9UHD2	729 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	USP25	Q9UHP3	1055 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	ZNF652	Q9Y2D9	606 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	CHMP3	Q9Y3E7	222 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	CEP83	Q9Y592	693 aa		3.88	□□□□□ -1.79
TTC3-214	ENST00000472398	GOLGA6L6	A8MZA4	724 aa		3.87	□□□□□ -1.79
TTC3-214	ENST00000472398	PRRT4	C9JH25	899 aa		3.87	□□□□□ -1.79
TTC3-214	ENST00000472398	PPP2R5A	Q15172	486 aa		3.87	□□□□□ -1.79
TTC3-214	ENST00000472398	WASHC4	Q2M389	1173 aa		3.87	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms