RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 SASH1O94885 1247 aa23.9■■□□□ 1.42
SHH-205ENST00000472308 HSP90B1P14625 803 aaKnown RBP23.9■■□□□ 1.42
SHH-205ENST00000472308 ANKRD18AQ8IVF6 992 aa23.9■■□□□ 1.42
SHH-205ENST00000472308 PHAXQ9H814 394 aaKnown RBP23.9■■□□□ 1.42
SHH-205ENST00000472308 POTEFA5A3E0 1075 aa23.89■■□□□ 1.41
SHH-205ENST00000472308 NF2P35240 595 aa23.89■■□□□ 1.41
SHH-205ENST00000472308 GOLGA2Q08379 1002 aa23.89■■□□□ 1.41
SHH-205ENST00000472308 LDLRAD1Q5T700 205 aa23.89■■□□□ 1.41
SHH-205ENST00000472308 CCDC191Q8NCU4 936 aa23.89■■□□□ 1.41
SHH-205ENST00000472308 PRKG1Q13976 671 aa23.88■■□□□ 1.41
SHH-205ENST00000472308 SPRYD7Q5W111 196 aa23.88■■□□□ 1.41
SHH-205ENST00000472308 OGFOD1Q8N543 542 aa23.87■■□□□ 1.41
SHH-205ENST00000472308 STRIP1Q5VSL9 837 aa23.86■■□□□ 1.41
SHH-205ENST00000472308 OTOP1Q7RTM1 612 aa23.86■■□□□ 1.41
SHH-205ENST00000472308 ARMC9Q7Z3E5 817 aa23.86■■□□□ 1.41
SHH-205ENST00000472308 MBIPQ9NS73 344 aa23.86■■□□□ 1.41
SHH-205ENST00000472308 CWC25Q9NXE8 425 aaPredicted RBP23.86■■□□□ 1.41
SHH-205ENST00000472308 MINPP1Q9UNW1 487 aa23.86■■□□□ 1.41
SHH-205ENST00000472308 FZD1Q9UP38 647 aa23.86■■□□□ 1.41
SHH-205ENST00000472308 MYO3BQ8WXR4 1341 aa23.85■■□□□ 1.41
SHH-205ENST00000472308 TXNRD3Q86VQ6 643 aa23.85■■□□□ 1.41
SHH-205ENST00000472308 ZBED3Q96IU2 234 aaPredicted RBP23.85■■□□□ 1.41
SHH-205ENST00000472308 TRIM17Q9Y577 477 aa23.85■■□□□ 1.41
SHH-205ENST00000472308 RBBP6Q7Z6E9 1792 aaKnown RBP23.84■■□□□ 1.41
SHH-205ENST00000472308 SSC5DA1L4H1 1573 aa23.84■■□□□ 1.41
SHH-205ENST00000472308 CTSWP56202 376 aa23.84■■□□□ 1.41
SHH-205ENST00000472308 FBXW7Q969H0 707 aa23.84■■□□□ 1.41
SHH-205ENST00000472308 ANGEL1Q9UNK9 670 aaKnown RBP23.84■■□□□ 1.41
SHH-205ENST00000472308 SPEF2Q9C093 1822 aa23.84■■□□□ 1.41
SHH-205ENST00000472308 ALDH1A1P00352 501 aa23.83■■□□□ 1.41
SHH-205ENST00000472308 CCT4P50991 539 aaKnown RBP23.83■■□□□ 1.41
SHH-205ENST00000472308 IFNL1Q8IU54 200 aa23.83■■□□□ 1.41
SHH-205ENST00000472308 APOBEC3FQ8IUX4 373 aaKnown RBP23.83■■□□□ 1.41
SHH-205ENST00000472308 RUNDC1Q96C34 613 aa23.83■■□□□ 1.41
SHH-205ENST00000472308 CDC5LQ99459 802 aaKnown RBP23.83■■□□□ 1.41
SHH-205ENST00000472308 COA1Q9GZY4 146 aa23.83■■□□□ 1.41
SHH-205ENST00000472308 BSDC1Q9NW68 430 aaPredicted RBP23.83■■□□□ 1.41
SHH-205ENST00000472308 LAMB1P07942 1786 aa23.83■■□□□ 1.4
SHH-205ENST00000472308 IGF2BP3O00425 579 aaKnown RBP eCLIP23.82■■□□□ 1.4
SHH-205ENST00000472308 METTL22Q9BUU2 404 aaPredicted RBP23.82■■□□□ 1.4
SHH-205ENST00000472308 GREM2Q9H772 168 aa23.82■■□□□ 1.4
SHH-205ENST00000472308 MANSC4A6NHS7 340 aaPredicted RBP23.81■■□□□ 1.4
SHH-205ENST00000472308 ZNF853P0CG23 659 aa23.81■■□□□ 1.4
SHH-205ENST00000472308 KLRK1P26718 216 aa23.81■■□□□ 1.4
SHH-205ENST00000472308 INTS3Q68E01 1043 aaKnown RBP23.81■■□□□ 1.4
SHH-205ENST00000472308 KIAA0825Q8IV33 1275 aa23.81■■□□□ 1.4
SHH-205ENST00000472308 TTLL11Q8NHH1 800 aa23.81■■□□□ 1.4
SHH-205ENST00000472308 COL1A1P02452 1464 aaPredicted RBP23.81■■□□□ 1.4
SHH-205ENST00000472308 RALBP1Q15311 655 aa23.8■■□□□ 1.4
SHH-205ENST00000472308 CLMNQ96JQ2 1002 aa23.8■■□□□ 1.4
SHH-205ENST00000472308 MMP14P50281 582 aa23.79■■□□□ 1.4
SHH-205ENST00000472308 MAP3K11Q16584 847 aa23.79■■□□□ 1.4
SHH-205ENST00000472308 KIAA0100Q14667 2235 aaKnown RBP23.78■■□□□ 1.4
SHH-205ENST00000472308 ELL2O00472 640 aaPredicted RBP23.78■■□□□ 1.4
SHH-205ENST00000472308 IGKV5-2P06315 115 aa23.78■■□□□ 1.4
SHH-205ENST00000472308 ZBTB48P10074 688 aaPredicted RBP23.78■■□□□ 1.4
SHH-205ENST00000472308 FXR1P51114 621 aaKnown RBP eCLIP23.78■■□□□ 1.4
SHH-205ENST00000472308 INHBEP58166 350 aa23.78■■□□□ 1.4
SHH-205ENST00000472308 CAP1Q01518 475 aa23.78■■□□□ 1.4
SHH-205ENST00000472308 TTLL5Q6EMB2 1281 aa23.78■■□□□ 1.4
SHH-205ENST00000472308 WNK4Q96J92 1243 aa23.78■■□□□ 1.4
SHH-205ENST00000472308 DEFB129Q9H1M3 183 aa23.78■■□□□ 1.4
SHH-205ENST00000472308 PTPN22Q9Y2R2 807 aa23.78■■□□□ 1.4
SHH-205ENST00000472308 ARMC5Q96C12 935 aa23.77■■□□□ 1.4
SHH-205ENST00000472308 SLC10A4Q96EP9 437 aa23.77■■□□□ 1.4
SHH-205ENST00000472308 SZT2Q5T011 3432 aa23.77■■□□□ 1.4
SHH-205ENST00000472308 EN2P19622 333 aaPredicted RBP23.76■■□□□ 1.39
SHH-205ENST00000472308 CD99L2Q8TCZ2 262 aa23.76■■□□□ 1.39
SHH-205ENST00000472308 MAP3K2Q9Y2U5 619 aa23.76■■□□□ 1.39
SHH-205ENST00000472308 LEMD3Q9Y2U8 911 aa23.76■■□□□ 1.39
SHH-205ENST00000472308 MYH3P11055 1940 aa23.76■■□□□ 1.39
SHH-205ENST00000472308 GTF2IP78347 998 aa23.75■■□□□ 1.39
SHH-205ENST00000472308 CRHR2Q13324 411 aa23.75■■□□□ 1.39
SHH-205ENST00000472308 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.75■■□□□ 1.39
SHH-205ENST00000472308 PCDHAC2Q9Y5I4 1007 aa23.75■■□□□ 1.39
SHH-205ENST00000472308 GJA5P36382 358 aa23.74■■□□□ 1.39
SHH-205ENST00000472308 CERS5Q8N5B7 392 aa23.74■■□□□ 1.39
SHH-205ENST00000472308 C8orf58Q8NAV2 365 aa23.74■■□□□ 1.39
SHH-205ENST00000472308 ERO1AQ96HE7 468 aa23.74■■□□□ 1.39
SHH-205ENST00000472308 ADAMTS8Q9UP79 889 aa23.74■■□□□ 1.39
SHH-205ENST00000472308 ZNF804BA4D1E1 1349 aa23.74■■□□□ 1.39
SHH-205ENST00000472308 DDX58O95786 925 aaKnown RBP23.73■■□□□ 1.39
SHH-205ENST00000472308 IFT57Q9NWB7 429 aa23.73■■□□□ 1.39
SHH-205ENST00000472308 MTMR14Q8NCE2 650 aa23.72■■□□□ 1.39
SHH-205ENST00000472308 PTPN18Q99952 460 aa23.72■■□□□ 1.39
SHH-205ENST00000472308 MYBBP1AQ9BQG0 1328 aaKnown RBP23.72■■□□□ 1.39
SHH-205ENST00000472308 AOX1Q06278 1338 aa23.71■■□□□ 1.39
SHH-205ENST00000472308 IRS2Q9Y4H2 1338 aa23.71■■□□□ 1.39
SHH-205ENST00000472308 WDR43Q15061 677 aaKnown RBP eCLIP23.71■■□□□ 1.39
SHH-205ENST00000472308 DLGAP5Q15398 846 aa23.71■■□□□ 1.39
SHH-205ENST00000472308 CWF19L2Q2TBE0 894 aaKnown RBP23.71■■□□□ 1.39
SHH-205ENST00000472308 EFCC1Q9HA90 598 aa23.71■■□□□ 1.39
SHH-205ENST00000472308 PPP2R3BQ9Y5P8 575 aa23.71■■□□□ 1.39
SHH-205ENST00000472308 PI4KAP2A4QPH2 592 aa23.7■■□□□ 1.38
SHH-205ENST00000472308 PPP1R12BO60237 982 aaPredicted RBP23.7■■□□□ 1.38
SHH-205ENST00000472308 KSR2Q6VAB6 950 aa23.7■■□□□ 1.38
SHH-205ENST00000472308 PI4KAP1Q8N8J0 262 aa23.7■■□□□ 1.38
SHH-205ENST00000472308 ECM29Q5VYK3 1845 aa23.7■■□□□ 1.38
SHH-205ENST00000472308 UNCXA6NJT0 531 aa23.69■■□□□ 1.38
SHH-205ENST00000472308 IGHMBP2P38935 993 aaKnown RBP23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms