RNA–Protein interactions for RNA: ENST00000472282.5

SMC4-213, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 667 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-213ENST00000472282 NLRP3Q96P20 1036 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 PSMD1Q99460 953 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 EPAS1Q99814 870 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 PHAXQ9H814 394 aaKnown RBP11.74□□□□□ -0.53
SMC4-213ENST00000472282 RABGEF1Q9UJ41 708 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 ZBED9Q6R2W3 1325 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 MYH3P11055 1940 aa11.74□□□□□ -0.53
SMC4-213ENST00000472282 TWISTNBQ3B726 338 aaPredicted RBP11.73□□□□□ -0.53
SMC4-213ENST00000472282 KLRG1Q96E93 195 aa11.73□□□□□ -0.53
SMC4-213ENST00000472282 ISCA1Q9BUE6 129 aa11.73□□□□□ -0.53
SMC4-213ENST00000472282 DBF4Q9UBU7 674 aaPredicted RBP11.73□□□□□ -0.53
SMC4-213ENST00000472282 TRMT112Q9UI30 125 aaKnown RBP11.73□□□□□ -0.53
SMC4-213ENST00000472282 RNF123Q5XPI4 1314 aa11.72□□□□□ -0.53
SMC4-213ENST00000472282 SH3TC1Q8TE82 1336 aa11.72□□□□□ -0.53
SMC4-213ENST00000472282 CC2D2BQ6DHV5 1058 aa11.72□□□□□ -0.53
SMC4-213ENST00000472282 TAF1DQ9H5J8 278 aaPredicted RBP11.72□□□□□ -0.53
SMC4-213ENST00000472282 RTL5Q5HYW3 569 aaPredicted RBP11.71□□□□□ -0.53
SMC4-213ENST00000472282 IFFO2Q5TF58 517 aa11.71□□□□□ -0.53
SMC4-213ENST00000472282 ANKK1Q8NFD2 765 aa11.71□□□□□ -0.53
SMC4-213ENST00000472282 FAM89AQ96GI7 184 aa11.71□□□□□ -0.53
SMC4-213ENST00000472282 HYPKQ9NX55 129 aa11.71□□□□□ -0.53
SMC4-213ENST00000472282 ATP6V0A2Q9Y487 856 aa11.71□□□□□ -0.53
SMC4-213ENST00000472282 TRPM7Q96QT4 1865 aa11.71□□□□□ -0.53
SMC4-213ENST00000472282 AOC3Q16853 763 aa11.7□□□□□ -0.54
SMC4-213ENST00000472282 TRMT2AQ8IZ69 625 aaKnown RBP11.7□□□□□ -0.54
SMC4-213ENST00000472282 JMYQ8N9B5 988 aa11.7□□□□□ -0.54
SMC4-213ENST00000472282 SCN9AQ15858 1988 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 IQCA1LA6NCM1 817 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 DPYSL4O14531 572 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 VAMP4O75379 141 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 RGS20O76081 388 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 EPHX2P34913 555 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 EAPPQ56P03 285 aaPredicted RBP11.69□□□□□ -0.54
SMC4-213ENST00000472282 CCDC30Q5VVM6 783 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 LAPTM4BQ86VI4 370 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 GPC2Q8N158 579 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 LARGE2Q8N3Y3 721 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 JDP2Q8WYK2 163 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 CELF1Q92879 486 aaKnown RBP11.69□□□□□ -0.54
SMC4-213ENST00000472282 YTHDC1Q96MU7 727 aaKnown RBP11.69□□□□□ -0.54
SMC4-213ENST00000472282 HACL1Q9UJ83 578 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 GJA3Q9Y6H8 435 aa11.69□□□□□ -0.54
SMC4-213ENST00000472282 PASKQ96RG2 1323 aa11.68□□□□□ -0.54
SMC4-213ENST00000472282 PSME4Q14997 1843 aa11.68□□□□□ -0.54
SMC4-213ENST00000472282 PPIP5K2O43314 1243 aa11.68□□□□□ -0.54
SMC4-213ENST00000472282 SCNN1DP51172 638 aa11.68□□□□□ -0.54
SMC4-213ENST00000472282 GRAPQ13588 217 aa11.68□□□□□ -0.54
SMC4-213ENST00000472282 RIC3Q7Z5B4 369 aa11.68□□□□□ -0.54
SMC4-213ENST00000472282 LDHDQ86WU2 507 aa11.68□□□□□ -0.54
SMC4-213ENST00000472282 SP8Q8IXZ3 490 aa11.68□□□□□ -0.54
SMC4-213ENST00000472282 GRAPLQ8TC17 118 aaPredicted RBP11.68□□□□□ -0.54
SMC4-213ENST00000472282 JARID2Q92833 1246 aaPredicted RBP11.68□□□□□ -0.54
SMC4-213ENST00000472282 MYD88Q99836 296 aa11.68□□□□□ -0.54
SMC4-213ENST00000472282 POLR2AP24928 1970 aaKnown RBP11.68□□□□□ -0.54
SMC4-213ENST00000472282 BBOX1O75936 387 aa11.67□□□□□ -0.54
SMC4-213ENST00000472282 ITGBL1O95965 494 aaPredicted RBP11.67□□□□□ -0.54
SMC4-213ENST00000472282 COL9A1P20849 921 aa11.67□□□□□ -0.54
SMC4-213ENST00000472282 EPS15P42566 896 aa11.67□□□□□ -0.54
SMC4-213ENST00000472282 EIF6P56537 245 aaKnown RBP11.67□□□□□ -0.54
SMC4-213ENST00000472282 SF3B3Q15393 1217 aaKnown RBP11.67□□□□□ -0.54
SMC4-213ENST00000472282 PROX2Q3B8N5 592 aa11.67□□□□□ -0.54
SMC4-213ENST00000472282 GRIPAP1Q4V328 841 aa11.67□□□□□ -0.54
SMC4-213ENST00000472282 DDX46Q7L014 1031 aaKnown RBP11.67□□□□□ -0.54
SMC4-213ENST00000472282 STK31Q9BXU1 1019 aa11.67□□□□□ -0.54
SMC4-213ENST00000472282 RTFDC1Q9BY42 306 aaPredicted RBP11.67□□□□□ -0.54
SMC4-213ENST00000472282 CHMP4AQ9BY43 222 aa11.67□□□□□ -0.54
SMC4-213ENST00000472282 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.67□□□□□ -0.54
SMC4-213ENST00000472282 ZNF646O15015 1829 aaPredicted RBP11.67□□□□□ -0.54
SMC4-213ENST00000472282 IRS4O14654 1257 aaPredicted RBP11.66□□□□□ -0.54
SMC4-213ENST00000472282 FMR1Q06787 632 aaKnown RBP eCLIP11.66□□□□□ -0.543e-7■□□□□ 10
SMC4-213ENST00000472282 TRIM28Q13263 835 aaKnown RBP11.66□□□□□ -0.54
SMC4-213ENST00000472282 C6orf132Q5T0Z8 1188 aa11.66□□□□□ -0.54
SMC4-213ENST00000472282 MAP1SQ66K74 1059 aaPredicted RBP11.66□□□□□ -0.54
SMC4-213ENST00000472282 DPP8Q6V1X1 898 aaPredicted RBP11.66□□□□□ -0.54
SMC4-213ENST00000472282 G2E3Q7L622 706 aa11.66□□□□□ -0.54
SMC4-213ENST00000472282 NIM1KQ8IY84 436 aa11.66□□□□□ -0.54
SMC4-213ENST00000472282 MPNDQ8N594 471 aa11.66□□□□□ -0.54
SMC4-213ENST00000472282 A0A1B0GUL6 1792 aa11.65□□□□□ -0.54
SMC4-213ENST00000472282 YDJCA8MPS7 323 aa11.65□□□□□ -0.54
SMC4-213ENST00000472282 CXCL9Q07325 125 aa11.65□□□□□ -0.54
SMC4-213ENST00000472282 KIAA2012Q0VF49 1180 aa11.65□□□□□ -0.54
SMC4-213ENST00000472282 SPRYD3Q8NCJ5 442 aa11.65□□□□□ -0.54
SMC4-213ENST00000472282 GPR101Q96P66 508 aaPredicted RBP11.65□□□□□ -0.54
SMC4-213ENST00000472282 SEC31BQ9NQW1 1179 aa11.65□□□□□ -0.54
SMC4-213ENST00000472282 MKRN1Q9UHC7 482 aaKnown RBP11.65□□□□□ -0.54
SMC4-213ENST00000472282 SHTN1A0MZ66 631 aa11.64□□□□□ -0.55
SMC4-213ENST00000472282 GPSM2P81274 684 aa11.64□□□□□ -0.55
SMC4-213ENST00000472282 ZBTB38Q8NAP3 1195 aaPredicted RBP11.64□□□□□ -0.55
SMC4-213ENST00000472282 SUPT20HQ8NEM7 779 aa11.64□□□□□ -0.55
SMC4-213ENST00000472282 METTL22Q9BUU2 404 aaPredicted RBP11.64□□□□□ -0.55
SMC4-213ENST00000472282 ZNRF3Q9ULT6 936 aa11.64□□□□□ -0.55
SMC4-213ENST00000472282 MAP3K2Q9Y2U5 619 aa11.64□□□□□ -0.55
SMC4-213ENST00000472282 PI4KAP2A4QPH2 592 aa11.63□□□□□ -0.55
SMC4-213ENST00000472282 PCCAP05165 728 aaPredicted RBP11.63□□□□□ -0.55
SMC4-213ENST00000472282 IGKV5-2P06315 115 aa11.63□□□□□ -0.55
SMC4-213ENST00000472282 CT47B1P0C2W7 299 aaPredicted RBP11.63□□□□□ -0.55
SMC4-213ENST00000472282 PNMA8AQ86V59 439 aaPredicted RBP11.63□□□□□ -0.55
SMC4-213ENST00000472282 CNTROBQ8N137 903 aa11.63□□□□□ -0.55
SMC4-213ENST00000472282 PI4KAP1Q8N8J0 262 aa11.63□□□□□ -0.55
SMC4-213ENST00000472282 CCDC191Q8NCU4 936 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms