RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 FER1L4A9Z1Z3 1794 aa7.18□□□□□ -1.26
VPS13A-210ENST00000471439 PIK3R2O00459 728 aa7.17□□□□□ -1.26
VPS13A-210ENST00000471439 MSTNO14793 375 aa7.17□□□□□ -1.26
VPS13A-210ENST00000471439 RGS9O75916 674 aaPredicted RBP7.17□□□□□ -1.26
VPS13A-210ENST00000471439 EIF1AXP47813 144 aaKnown RBP7.17□□□□□ -1.26
VPS13A-210ENST00000471439 NRLP54845 237 aa7.17□□□□□ -1.26
VPS13A-210ENST00000471439 ALYREFQ86V81 257 aaKnown RBP7.17□□□□□ -1.26
VPS13A-210ENST00000471439 NLRP13Q86W25 1043 aa7.17□□□□□ -1.26
VPS13A-210ENST00000471439 PIK3R5Q8WYR1 880 aa7.17□□□□□ -1.26
VPS13A-210ENST00000471439 SMG9Q9H0W8 520 aaKnown RBP7.17□□□□□ -1.26
VPS13A-210ENST00000471439 TTBK1Q5TCY1 1321 aaPredicted RBP7.17□□□□□ -1.26
VPS13A-210ENST00000471439 CD109Q6YHK3 1445 aa7.17□□□□□ -1.26
VPS13A-210ENST00000471439 LOC100996750A0A140TA64 210 aa7.16□□□□□ -1.26
VPS13A-210ENST00000471439 ABL1P00519 1130 aa7.16□□□□□ -1.26
VPS13A-210ENST00000471439 PSAPP07602 524 aa7.16□□□□□ -1.26
VPS13A-210ENST00000471439 SPATA31C1P0DKV0 1188 aa7.16□□□□□ -1.26
VPS13A-210ENST00000471439 SERPINB4P48594 390 aa7.16□□□□□ -1.26
VPS13A-210ENST00000471439 DNM1Q05193 864 aaKnown RBP7.16□□□□□ -1.26
VPS13A-210ENST00000471439 ELMSAN1Q6PJG2 1045 aa7.16□□□□□ -1.26
VPS13A-210ENST00000471439 ADAMTSL4Q6UY14 1074 aa7.16□□□□□ -1.26
VPS13A-210ENST00000471439 DMRTC2Q8IXT2 367 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-210ENST00000471439 KRTAP4-6Q9BYQ5 205 aa7.16□□□□□ -1.26
VPS13A-210ENST00000471439 C11orf16Q9NQ32 467 aa7.16□□□□□ -1.26
VPS13A-210ENST00000471439 UHRF1BP1Q6BDS2 1440 aa7.16□□□□□ -1.26
VPS13A-210ENST00000471439 RUSC2Q8N2Y8 1516 aa7.16□□□□□ -1.26
VPS13A-210ENST00000471439 A0A0A0MRY4 1105 aa7.15□□□□□ -1.26
VPS13A-210ENST00000471439 PDGFAP04085 211 aa7.15□□□□□ -1.26
VPS13A-210ENST00000471439 CEBPAP49715 358 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-210ENST00000471439 TRAPPC3LQ5T215 181 aa7.15□□□□□ -1.26
VPS13A-210ENST00000471439 SHISA2Q6UWI4 295 aa7.15□□□□□ -1.26
VPS13A-210ENST00000471439 GGNBP2Q9H3C7 697 aa7.15□□□□□ -1.26
VPS13A-210ENST00000471439 KANSL3Q9P2N6 904 aa7.15□□□□□ -1.26
VPS13A-210ENST00000471439 USTQ9Y2C2 406 aa7.15□□□□□ -1.26
VPS13A-210ENST00000471439 TOP2AP11388 1531 aaKnown RBP7.15□□□□□ -1.27
VPS13A-210ENST00000471439 LOC102724428A0A0B4J2F2 783 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 FHAD1B1AJZ9 1412 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 RAPGEF3O95398 923 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 PTPRGP23470 1445 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 SIK1P57059 783 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 ATP11AP98196 1134 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 NOM1Q5C9Z4 860 aaKnown RBP7.14□□□□□ -1.27
VPS13A-210ENST00000471439 OR13H1Q8NG92 308 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 PLD4Q96BZ4 506 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 CNTN3Q9P232 1028 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 ALKQ9UM73 1620 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 POLIQ9UNA4 740 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 TRIM33Q9UPN9 1127 aa7.14□□□□□ -1.27
VPS13A-210ENST00000471439 SIGLEC1Q9BZZ2 1709 aa7.13□□□□□ -1.27
VPS13A-210ENST00000471439 KIAA0556O60303 1618 aa7.13□□□□□ -1.27
VPS13A-210ENST00000471439 NCOA1Q15788 1441 aa7.13□□□□□ -1.27
VPS13A-210ENST00000471439 HOXD8P13378 290 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-210ENST00000471439 ACPPP15309 386 aa7.13□□□□□ -1.27
VPS13A-210ENST00000471439 SOX18P35713 384 aa7.13□□□□□ -1.27
VPS13A-210ENST00000471439 PRRT3Q5FWE3 981 aa7.13□□□□□ -1.27
VPS13A-210ENST00000471439 MSL1Q68DK7 614 aa7.13□□□□□ -1.27
VPS13A-210ENST00000471439 GDF6Q6KF10 455 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-210ENST00000471439 FAM13BQ9NYF5 915 aa7.13□□□□□ -1.27
VPS13A-210ENST00000471439 FRRS1LQ9P0K9 344 aa7.13□□□□□ -1.27
VPS13A-210ENST00000471439 PDIA4P13667 645 aaKnown RBP7.12□□□□□ -1.27
VPS13A-210ENST00000471439 SELPP16109 830 aa7.12□□□□□ -1.27
VPS13A-210ENST00000471439 YY1P25490 414 aa7.12□□□□□ -1.27
VPS13A-210ENST00000471439 BAG6P46379 1132 aa7.12□□□□□ -1.27
VPS13A-210ENST00000471439 TRIM28Q13263 835 aaKnown RBP7.12□□□□□ -1.27
VPS13A-210ENST00000471439 ZNF438Q7Z4V0 828 aa7.12□□□□□ -1.27
VPS13A-210ENST00000471439 FMR1NBQ8N0W7 255 aaPredicted RBP7.12□□□□□ -1.27
VPS13A-210ENST00000471439 CCDC87Q9NVE4 849 aa7.12□□□□□ -1.27
VPS13A-210ENST00000471439 ABI2Q9NYB9 513 aaPredicted RBP7.12□□□□□ -1.27
VPS13A-210ENST00000471439 CCDC88BA6NC98 1476 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 SPDYE3A6NKU9 549 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 FZD6O60353 706 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 GHRHP01286 108 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 MLECQ14165 292 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 PCSK7Q16549 785 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 C8orf34Q49A92 452 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 TTC39BQ5VTQ0 682 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-210ENST00000471439 WFDC8Q8IUA0 241 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 C1orf127Q8N9H9 656 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 TRAIPQ9BWF2 469 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 ELP3Q9H9T3 547 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 ZCCHC11Q5TAX3 1644 aaKnown RBP7.11□□□□□ -1.27
VPS13A-210ENST00000471439 ABCA10Q8WWZ4 1543 aa7.11□□□□□ -1.27
VPS13A-210ENST00000471439 CEP350Q5VT06 3117 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 H3BRB1 525 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 DEAF1O75398 565 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-210ENST00000471439 TRPA1O75762 1119 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 FURINP09958 794 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 NPR3P17342 541 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 DOC2BQ14184 412 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 RASSF4Q9H2L5 321 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 CHRDQ9H2X0 955 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 TUT1Q9H6E5 874 aaKnown RBP7.1□□□□□ -1.27
VPS13A-210ENST00000471439 FNDC3AQ9Y2H6 1198 aaKnown RBP7.1□□□□□ -1.27
VPS13A-210ENST00000471439 CUX1P39880 1505 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 KDM5BQ9UGL1 1544 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 UHRF1BP1LA0JNW5 1464 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 POGZQ7Z3K3 1410 aa7.1□□□□□ -1.27
VPS13A-210ENST00000471439 MZF1P28698 734 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-210ENST00000471439 ARID4AP29374 1257 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-210ENST00000471439 TRIM26Q12899 539 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-210ENST00000471439 AAMPQ13685 434 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms