RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 EXOSC9Q06265 439 aaKnown RBP22.31■■□□□ 1.16
COL7A1-208ENST00000470076 NOGQ13253 232 aa22.31■■□□□ 1.16
COL7A1-208ENST00000470076 C2orf69Q8N8R5 385 aa22.31■■□□□ 1.16
COL7A1-208ENST00000470076 GBA2Q9HCG7 927 aaPredicted RBP22.31■■□□□ 1.16
COL7A1-208ENST00000470076 LEMD3Q9Y2U8 911 aa22.31■■□□□ 1.16
COL7A1-208ENST00000470076 WTIPA6NIX2 430 aaPredicted RBP22.3■■□□□ 1.16
COL7A1-208ENST00000470076 CSF1RP07333 972 aa22.3■■□□□ 1.16
COL7A1-208ENST00000470076 ITGA6P23229 1130 aa22.3■■□□□ 1.16
COL7A1-208ENST00000470076 ANKRD2Q9GZV1 360 aa22.29■■□□□ 1.16
COL7A1-208ENST00000470076 MYOZ2Q9NPC6 264 aa22.29■■□□□ 1.16
COL7A1-208ENST00000470076 SCARF1Q14162 830 aa22.28■■□□□ 1.16
COL7A1-208ENST00000470076 FAM161AQ3B820 660 aa22.28■■□□□ 1.16
COL7A1-208ENST00000470076 RGMBQ6NW40 437 aa22.28■■□□□ 1.16
COL7A1-208ENST00000470076 MPHOSPH8Q99549 860 aa22.28■■□□□ 1.16
COL7A1-208ENST00000470076 COA1Q9GZY4 146 aa22.28■■□□□ 1.16
COL7A1-208ENST00000470076 ASTN2O75129 1339 aaPredicted RBP22.28■■□□□ 1.16
COL7A1-208ENST00000470076 ANGEL2Q5VTE6 544 aaKnown RBP22.27■■□□□ 1.16
COL7A1-208ENST00000470076 MYO3BQ8WXR4 1341 aa22.27■■□□□ 1.16
COL7A1-208ENST00000470076 DACT2Q5SW24 774 aa22.26■■□□□ 1.15
COL7A1-208ENST00000470076 STRIP1Q5VSL9 837 aa22.26■■□□□ 1.15
COL7A1-208ENST00000470076 CCDC102AQ96A19 550 aa22.26■■□□□ 1.15
COL7A1-208ENST00000470076 CDCA5Q96FF9 252 aa22.26■■□□□ 1.15
COL7A1-208ENST00000470076 ZNF804BA4D1E1 1349 aa22.26■■□□□ 1.15
COL7A1-208ENST00000470076 PITPNM2Q9BZ72 1349 aa22.26■■□□□ 1.15
COL7A1-208ENST00000470076 ZNF646O15015 1829 aaPredicted RBP22.25■■□□□ 1.15
COL7A1-208ENST00000470076 OGFOD1Q8N543 542 aa22.25■■□□□ 1.15
COL7A1-208ENST00000470076 SPINK5Q9NQ38 1064 aaPredicted RBP22.25■■□□□ 1.15
COL7A1-208ENST00000470076 TSKSQ9UJT2 592 aa22.25■■□□□ 1.15
COL7A1-208ENST00000470076 ANKRD18BA2A2Z9 1011 aa22.24■■□□□ 1.15
COL7A1-208ENST00000470076 MMP14P50281 582 aa22.24■■□□□ 1.15
COL7A1-208ENST00000470076 BEND3Q5T5X7 828 aa22.24■■□□□ 1.15
COL7A1-208ENST00000470076 TXNRD3Q86VQ6 643 aa22.24■■□□□ 1.15
COL7A1-208ENST00000470076 FAM9BQ8IZU0 186 aa22.24■■□□□ 1.15
COL7A1-208ENST00000470076 FAM155AB1AL88 458 aaPredicted RBP22.23■■□□□ 1.15
COL7A1-208ENST00000470076 F6X3S4 739 aa22.23■■□□□ 1.15
COL7A1-208ENST00000470076 ZNF157P51786 506 aaPredicted RBP22.23■■□□□ 1.15
COL7A1-208ENST00000470076 ABHD8Q96I13 439 aa22.23■■□□□ 1.15
COL7A1-208ENST00000470076 ZIC5Q96T25 663 aa22.23■■□□□ 1.15
COL7A1-208ENST00000470076 KCNJ4P48050 445 aa22.22■■□□□ 1.15
COL7A1-208ENST00000470076 FKBP1BP68106 108 aa22.22■■□□□ 1.15
COL7A1-208ENST00000470076 CHRNDQ07001 517 aa22.22■■□□□ 1.15
COL7A1-208ENST00000470076 FBXW7Q969H0 707 aa22.22■■□□□ 1.15
COL7A1-208ENST00000470076 FOXO4P98177 505 aa22.21■■□□□ 1.15
COL7A1-208ENST00000470076 IFIT5Q13325 482 aaKnown RBP22.21■■□□□ 1.15
COL7A1-208ENST00000470076 TTLL5Q6EMB2 1281 aa22.21■■□□□ 1.15
COL7A1-208ENST00000470076 MXD3Q9BW11 206 aa22.21■■□□□ 1.15
COL7A1-208ENST00000470076 CASP8AP2Q9UKL3 1982 aa22.2■■□□□ 1.14
COL7A1-208ENST00000470076 KLRK1P26718 216 aa22.2■■□□□ 1.14
COL7A1-208ENST00000470076 NBPF9Q3BBW0 867 aa22.2■■□□□ 1.14
COL7A1-208ENST00000470076 PAPPA2Q9BXP8 1791 aa22.2■■□□□ 1.14
COL7A1-208ENST00000470076 GRM8O00222 908 aa22.19■■□□□ 1.14
COL7A1-208ENST00000470076 SLC10A3P09131 477 aa22.19■■□□□ 1.14
COL7A1-208ENST00000470076 KIF23Q02241 960 aaPredicted RBP22.19■■□□□ 1.14
COL7A1-208ENST00000470076 CHMP3Q9Y3E7 222 aa22.19■■□□□ 1.14
COL7A1-208ENST00000470076 WNT10BO00744 389 aa22.18■■□□□ 1.14
COL7A1-208ENST00000470076 C15orf52Q6ZUT6 534 aaKnown RBP22.18■■□□□ 1.14
COL7A1-208ENST00000470076 A0A1B0GUL6 1792 aa22.17■■□□□ 1.14
COL7A1-208ENST00000470076 ALDH1L1O75891 902 aa22.17■■□□□ 1.14
COL7A1-208ENST00000470076 GTF2IP78347 998 aa22.17■■□□□ 1.14
COL7A1-208ENST00000470076 LMBR1LQ6UX01 489 aa22.17■■□□□ 1.14
COL7A1-208ENST00000470076 CD209Q9NNX6 404 aa22.17■■□□□ 1.14
COL7A1-208ENST00000470076 SAGE1Q9NXZ1 904 aa22.17■■□□□ 1.14
COL7A1-208ENST00000470076 C9orf78Q9NZ63 289 aaPredicted RBP22.17■■□□□ 1.14
COL7A1-208ENST00000470076 HDAC9Q9UKV0 1011 aa22.17■■□□□ 1.14
COL7A1-208ENST00000470076 AKAP11Q9UKA4 1901 aa22.17■■□□□ 1.14
COL7A1-208ENST00000470076 IRS2Q9Y4H2 1338 aa22.16■■□□□ 1.14
COL7A1-208ENST00000470076 TAF5LO75529 589 aa22.16■■□□□ 1.14
COL7A1-208ENST00000470076 CCDC57Q2TAC2 916 aa22.16■■□□□ 1.14
COL7A1-208ENST00000470076 ZNF521Q96K83 1311 aa22.15■■□□□ 1.14
COL7A1-208ENST00000470076 EPHA10Q5JZY3 1008 aa22.15■■□□□ 1.14
COL7A1-208ENST00000470076 KIAA0825Q8IV33 1275 aa22.15■■□□□ 1.14
COL7A1-208ENST00000470076 REM2Q8IYK8 340 aaPredicted RBP22.15■■□□□ 1.14
COL7A1-208ENST00000470076 HELBQ8NG08 1087 aaPredicted RBP22.15■■□□□ 1.14
COL7A1-208ENST00000470076 SRCIN1Q9C0H9 1055 aa22.15■■□□□ 1.14
COL7A1-208ENST00000470076 SNAP23O00161 211 aa22.14■■□□□ 1.13
COL7A1-208ENST00000470076 TAF7LQ5H9L4 462 aa22.14■■□□□ 1.13
COL7A1-208ENST00000470076 SLC4A10Q6U841 1118 aa22.14■■□□□ 1.13
COL7A1-208ENST00000470076 LDHAL6AQ6ZMR3 332 aa22.14■■□□□ 1.13
COL7A1-208ENST00000470076 ZNF804AQ7Z570 1209 aa22.14■■□□□ 1.13
COL7A1-208ENST00000470076 RASAL3Q86YV0 1011 aa22.14■■□□□ 1.13
COL7A1-208ENST00000470076 SCAF8Q9UPN6 1271 aaKnown RBP22.14■■□□□ 1.13
COL7A1-208ENST00000470076 SASH1O94885 1247 aa22.13■■□□□ 1.13
COL7A1-208ENST00000470076 NF2P35240 595 aa22.13■■□□□ 1.13
COL7A1-208ENST00000470076 APOBEC3FQ8IUX4 373 aaKnown RBP22.13■■□□□ 1.13
COL7A1-208ENST00000470076 CSRNP1Q96S65 589 aa22.13■■□□□ 1.13
COL7A1-208ENST00000470076 PRAMEF18Q5VWM3 479 aa22.12■■□□□ 1.13
COL7A1-208ENST00000470076 ZBED3Q96IU2 234 aaPredicted RBP22.12■■□□□ 1.13
COL7A1-208ENST00000470076 ZNF594Q96JF6 807 aaPredicted RBP22.12■■□□□ 1.13
COL7A1-208ENST00000470076 CNNM1Q9NRU3 951 aa22.12■■□□□ 1.13
COL7A1-208ENST00000470076 RNF186Q9NXI6 227 aa22.12■■□□□ 1.13
COL7A1-208ENST00000470076 IL1R1P14778 569 aa22.11■■□□□ 1.13
COL7A1-208ENST00000470076 MCOLN1Q9GZU1 580 aa22.11■■□□□ 1.13
COL7A1-208ENST00000470076 CCDC85CA6NKD9 419 aa22.1■■□□□ 1.13
COL7A1-208ENST00000470076 UBE2Q2LH0YL09 131 aa22.1■■□□□ 1.13
COL7A1-208ENST00000470076 TRPA1O75762 1119 aa22.1■■□□□ 1.13
COL7A1-208ENST00000470076 TTLL12Q14166 644 aaPredicted RBP22.1■■□□□ 1.13
COL7A1-208ENST00000470076 MOB2Q70IA6 237 aa22.1■■□□□ 1.13
COL7A1-208ENST00000470076 FKBP1AP62942 108 aaKnown RBP22.09■■□□□ 1.13
COL7A1-208ENST00000470076 DGKZQ13574 1117 aa22.09■■□□□ 1.13
COL7A1-208ENST00000470076 DLGAP5Q15398 846 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms