RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 GMLQ99445 158 aa21.1■□□□□ 0.97
CCDC28B-204ENST00000469003 BEGAINQ9BUH8 593 aa21.1■□□□□ 0.97
CCDC28B-204ENST00000469003 LEMD3Q9Y2U8 911 aa21.1■□□□□ 0.97
CCDC28B-204ENST00000469003 MLLT1Q03111 559 aaPredicted RBP21.09■□□□□ 0.97
CCDC28B-204ENST00000469003 BEND3Q5T5X7 828 aa21.09■□□□□ 0.97
CCDC28B-204ENST00000469003 MPHOSPH8Q99549 860 aa21.09■□□□□ 0.97
CCDC28B-204ENST00000469003 AOC2O75106 756 aa21.08■□□□□ 0.97
CCDC28B-204ENST00000469003 DLK2Q6UY11 383 aa21.08■□□□□ 0.97
CCDC28B-204ENST00000469003 ANKRD2Q9GZV1 360 aa21.08■□□□□ 0.97
CCDC28B-204ENST00000469003 GGA3Q9NZ52 723 aa21.08■□□□□ 0.97
CCDC28B-204ENST00000469003 ZNF646O15015 1829 aaPredicted RBP21.07■□□□□ 0.96
CCDC28B-204ENST00000469003 ADM5C9JUS6 153 aa21.07■□□□□ 0.96
CCDC28B-204ENST00000469003 USP17L8P0C7I0 530 aa21.07■□□□□ 0.96
CCDC28B-204ENST00000469003 COA1Q9GZY4 146 aa21.07■□□□□ 0.96
CCDC28B-204ENST00000469003 ZNF521Q96K83 1311 aa21.06■□□□□ 0.96
CCDC28B-204ENST00000469003 ANKRD18BA2A2Z9 1011 aa21.06■□□□□ 0.96
CCDC28B-204ENST00000469003 FOXO4P98177 505 aa21.06■□□□□ 0.96
CCDC28B-204ENST00000469003 SULF1Q8IWU6 871 aa21.06■□□□□ 0.96
CCDC28B-204ENST00000469003 ZNF804BA4D1E1 1349 aa21.05■□□□□ 0.96
CCDC28B-204ENST00000469003 ASTN2O75129 1339 aaPredicted RBP21.05■□□□□ 0.96
CCDC28B-204ENST00000469003 HUNKP57058 714 aa21.05■□□□□ 0.96
CCDC28B-204ENST00000469003 SCARF1Q14162 830 aa21.05■□□□□ 0.96
CCDC28B-204ENST00000469003 TXNRD3Q86VQ6 643 aa21.05■□□□□ 0.96
CCDC28B-204ENST00000469003 GBA2Q9HCG7 927 aaPredicted RBP21.05■□□□□ 0.96
CCDC28B-204ENST00000469003 MYOZ2Q9NPC6 264 aa21.05■□□□□ 0.96
CCDC28B-204ENST00000469003 CHRNDQ07001 517 aa21.04■□□□□ 0.96
CCDC28B-204ENST00000469003 DACT2Q5SW24 774 aa21.04■□□□□ 0.96
CCDC28B-204ENST00000469003 C2orf69Q8N8R5 385 aa21.04■□□□□ 0.96
CCDC28B-204ENST00000469003 MYO3BQ8WXR4 1341 aa21.04■□□□□ 0.96
CCDC28B-204ENST00000469003 A0A1B0GUL6 1792 aa21.03■□□□□ 0.96
CCDC28B-204ENST00000469003 GRM8O00222 908 aa21.03■□□□□ 0.96
CCDC28B-204ENST00000469003 IFIT5Q13325 482 aaKnown RBP21.03■□□□□ 0.96
CCDC28B-204ENST00000469003 STRIP1Q5VSL9 837 aa21.03■□□□□ 0.96
CCDC28B-204ENST00000469003 ANGEL2Q5VTE6 544 aaKnown RBP21.03■□□□□ 0.96
CCDC28B-204ENST00000469003 PITPNM2Q9BZ72 1349 aa21.03■□□□□ 0.96
CCDC28B-204ENST00000469003 ALDH1L1O75891 902 aa21.02■□□□□ 0.96
CCDC28B-204ENST00000469003 KLRK1P26718 216 aa21.02■□□□□ 0.96
CCDC28B-204ENST00000469003 KCNJ4P48050 445 aa21.02■□□□□ 0.96
CCDC28B-204ENST00000469003 BRPF1P55201 1214 aaPredicted RBP21.02■□□□□ 0.96
CCDC28B-204ENST00000469003 FBXW7Q969H0 707 aa21.02■□□□□ 0.96
CCDC28B-204ENST00000469003 CHMP3Q9Y3E7 222 aa21.02■□□□□ 0.96
CCDC28B-204ENST00000469003 NOGQ13253 232 aa21.01■□□□□ 0.95
CCDC28B-204ENST00000469003 LMBR1LQ6UX01 489 aa21.01■□□□□ 0.95
CCDC28B-204ENST00000469003 CDCA5Q96FF9 252 aa21.01■□□□□ 0.95
CCDC28B-204ENST00000469003 MXD3Q9BW11 206 aa21.01■□□□□ 0.95
CCDC28B-204ENST00000469003 CA12O43570 354 aa21■□□□□ 0.95
CCDC28B-204ENST00000469003 MMP14P50281 582 aa21■□□□□ 0.95
CCDC28B-204ENST00000469003 EPHA10Q5JZY3 1008 aa21■□□□□ 0.95
CCDC28B-204ENST00000469003 TTLL5Q6EMB2 1281 aa21■□□□□ 0.95
CCDC28B-204ENST00000469003 RGMBQ6NW40 437 aa21■□□□□ 0.95
CCDC28B-204ENST00000469003 SLC4A10Q6U841 1118 aa21■□□□□ 0.95
CCDC28B-204ENST00000469003 OGFOD1Q8N543 542 aa21■□□□□ 0.95
CCDC28B-204ENST00000469003 SRCIN1Q9C0H9 1055 aa21■□□□□ 0.95
CCDC28B-204ENST00000469003 C9orf78Q9NZ63 289 aaPredicted RBP21■□□□□ 0.95
CCDC28B-204ENST00000469003 RGS19P49795 217 aa20.99■□□□□ 0.95
CCDC28B-204ENST00000469003 C15orf52Q6ZUT6 534 aaKnown RBP20.99■□□□□ 0.95
CCDC28B-204ENST00000469003 TSKSQ9UJT2 592 aa20.99■□□□□ 0.95
CCDC28B-204ENST00000469003 IRS2Q9Y4H2 1338 aa20.99■□□□□ 0.95
CCDC28B-204ENST00000469003 TAF5LO75529 589 aa20.98■□□□□ 0.95
CCDC28B-204ENST00000469003 CCDC57Q2TAC2 916 aa20.98■□□□□ 0.95
CCDC28B-204ENST00000469003 HELBQ8NG08 1087 aaPredicted RBP20.98■□□□□ 0.95
CCDC28B-204ENST00000469003 CCDC102AQ96A19 550 aa20.98■□□□□ 0.95
CCDC28B-204ENST00000469003 CD209Q9NNX6 404 aa20.98■□□□□ 0.95
CCDC28B-204ENST00000469003 PCDH10Q9P2E7 1040 aa20.98■□□□□ 0.95
CCDC28B-204ENST00000469003 FAM155AB1AL88 458 aaPredicted RBP20.97■□□□□ 0.95
CCDC28B-204ENST00000469003 E9PSI1 815 aa20.97■□□□□ 0.95
CCDC28B-204ENST00000469003 SNAP23O00161 211 aa20.97■□□□□ 0.95
CCDC28B-204ENST00000469003 NBPF9Q3BBW0 867 aa20.97■□□□□ 0.95
CCDC28B-204ENST00000469003 TAF7LQ5H9L4 462 aa20.97■□□□□ 0.95
CCDC28B-204ENST00000469003 ZIC5Q96T25 663 aa20.97■□□□□ 0.95
CCDC28B-204ENST00000469003 PAPPA2Q9BXP8 1791 aa20.96■□□□□ 0.95
CCDC28B-204ENST00000469003 ZNF157P51786 506 aaPredicted RBP20.96■□□□□ 0.95
CCDC28B-204ENST00000469003 GTF2IP78347 998 aa20.96■□□□□ 0.95
CCDC28B-204ENST00000469003 LDHAL6AQ6ZMR3 332 aa20.96■□□□□ 0.95
CCDC28B-204ENST00000469003 MRPL50Q8N5N7 158 aaKnown RBP20.96■□□□□ 0.95
CCDC28B-204ENST00000469003 ZNF594Q96JF6 807 aaPredicted RBP20.96■□□□□ 0.95
CCDC28B-204ENST00000469003 HDAC9Q9UKV0 1011 aa20.96■□□□□ 0.95
CCDC28B-204ENST00000469003 WNT10BO00744 389 aa20.95■□□□□ 0.94
CCDC28B-204ENST00000469003 FKBP1BP68106 108 aa20.95■□□□□ 0.94
CCDC28B-204ENST00000469003 ZNF804AQ7Z570 1209 aa20.94■□□□□ 0.94
CCDC28B-204ENST00000469003 KIAA0825Q8IV33 1275 aa20.94■□□□□ 0.94
CCDC28B-204ENST00000469003 SUCLG2Q96I99 432 aa20.94■□□□□ 0.94
CCDC28B-204ENST00000469003 CNNM1Q9NRU3 951 aa20.94■□□□□ 0.94
CCDC28B-204ENST00000469003 UTYO14607 1347 aa20.94■□□□□ 0.94
CCDC28B-204ENST00000469003 PDE4DIPQ5VU43 2346 aa20.94■□□□□ 0.94
CCDC28B-204ENST00000469003 CASP8AP2Q9UKL3 1982 aa20.94■□□□□ 0.94
CCDC28B-204ENST00000469003 SLC10A3P09131 477 aa20.93■□□□□ 0.94
CCDC28B-204ENST00000469003 NBPF7P0C2Y1 421 aaPredicted RBP20.93■□□□□ 0.94
CCDC28B-204ENST00000469003 IL1R1P14778 569 aa20.93■□□□□ 0.94
CCDC28B-204ENST00000469003 KAZALD1Q96I82 304 aa20.93■□□□□ 0.94
CCDC28B-204ENST00000469003 SCAF8Q9UPN6 1271 aaKnown RBP20.93■□□□□ 0.94
CCDC28B-204ENST00000469003 PTPRCP08575 1304 aa20.93■□□□□ 0.94
CCDC28B-204ENST00000469003 SASH1O94885 1247 aa20.92■□□□□ 0.94
CCDC28B-204ENST00000469003 KIF23Q02241 960 aaPredicted RBP20.92■□□□□ 0.94
CCDC28B-204ENST00000469003 SLFN5Q08AF3 891 aa20.92■□□□□ 0.94
CCDC28B-204ENST00000469003 ZBED3Q96IU2 234 aaPredicted RBP20.92■□□□□ 0.94
CCDC28B-204ENST00000469003 MCOLN1Q9GZU1 580 aa20.92■□□□□ 0.94
CCDC28B-204ENST00000469003 PLIN1O60240 522 aa20.91■□□□□ 0.94
CCDC28B-204ENST00000469003 SSH1Q8WYL5 1049 aa20.91■□□□□ 0.94
CCDC28B-204ENST00000469003 FKBP1AP62942 108 aaKnown RBP20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms