RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 FOXD3Q9UJU5 478 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-218ENST00000468937 EREGO14944 169 aa9.84□□□□□ -0.83
SYNE1-218ENST00000468937 IGF2-ASQ6U949 168 aa9.84□□□□□ -0.83
SYNE1-218ENST00000468937 TMC1Q8TDI8 760 aa9.84□□□□□ -0.83
SYNE1-218ENST00000468937 LACRTQ9GZZ8 138 aa9.84□□□□□ -0.83
SYNE1-218ENST00000468937 ZFYVE28Q9HCC9 887 aa9.84□□□□□ -0.83
SYNE1-218ENST00000468937 DZANK1Q9NVP4 752 aa9.84□□□□□ -0.83
SYNE1-218ENST00000468937 SELPP16109 830 aa9.83□□□□□ -0.84
SYNE1-218ENST00000468937 FAM117BQ6P1L5 589 aa9.83□□□□□ -0.84
SYNE1-218ENST00000468937 USP21Q9UK80 565 aa9.83□□□□□ -0.84
SYNE1-218ENST00000468937 PDE2AO00408 941 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-218ENST00000468937 CABP4P57796 275 aa9.82□□□□□ -0.84
SYNE1-218ENST00000468937 FAM129BQ96TA1 746 aa9.82□□□□□ -0.84
SYNE1-218ENST00000468937 POP1Q99575 1024 aaKnown RBP9.82□□□□□ -0.84
SYNE1-218ENST00000468937 ADAM19Q9H013 955 aa9.82□□□□□ -0.84
SYNE1-218ENST00000468937 DEAF1O75398 565 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-218ENST00000468937 ADGRE1Q14246 886 aa9.81□□□□□ -0.84
SYNE1-218ENST00000468937 TMEM102Q8N9M5 508 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-218ENST00000468937 DMRTB1Q96MA1 342 aa9.81□□□□□ -0.84
SYNE1-218ENST00000468937 OSMRQ99650 979 aa9.81□□□□□ -0.84
SYNE1-218ENST00000468937 SETDB1Q15047 1291 aa9.8□□□□□ -0.84
SYNE1-218ENST00000468937 SHISA2Q6UWI4 295 aa9.8□□□□□ -0.84
SYNE1-218ENST00000468937 RBCK1Q9BYM8 510 aa9.8□□□□□ -0.84
SYNE1-218ENST00000468937 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-218ENST00000468937 LINC01387J3KSC0 135 aa9.79□□□□□ -0.84
SYNE1-218ENST00000468937 NFKBIEO00221 500 aa9.79□□□□□ -0.84
SYNE1-218ENST00000468937 DLL1O00548 723 aa9.79□□□□□ -0.84
SYNE1-218ENST00000468937 MBTPS1Q14703 1052 aa9.79□□□□□ -0.84
SYNE1-218ENST00000468937 DCTN4Q9UJW0 460 aa9.79□□□□□ -0.84
SYNE1-218ENST00000468937 IVNS1ABPQ9Y6Y0 642 aa9.79□□□□□ -0.84
SYNE1-218ENST00000468937 ACPPP15309 386 aa9.78□□□□□ -0.84
SYNE1-218ENST00000468937 TXNRD3Q86VQ6 643 aa9.78□□□□□ -0.84
SYNE1-218ENST00000468937 NXPE3Q969Y0 559 aa9.78□□□□□ -0.84
SYNE1-218ENST00000468937 ZKSCAN3Q9BRR0 538 aa9.78□□□□□ -0.84
SYNE1-218ENST00000468937 MRPL18Q9H0U6 180 aaKnown RBP9.78□□□□□ -0.84
SYNE1-218ENST00000468937 SH2B1Q9NRF2 756 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-218ENST00000468937 CPNE3O75131 537 aaKnown RBP9.77□□□□□ -0.85
SYNE1-218ENST00000468937 PDIA4P13667 645 aaKnown RBP9.77□□□□□ -0.85
SYNE1-218ENST00000468937 GALNT12Q8IXK2 581 aa9.77□□□□□ -0.85
SYNE1-218ENST00000468937 KLHL23Q8NBE8 558 aa9.77□□□□□ -0.85
SYNE1-218ENST00000468937 WNT8BQ93098 351 aa9.77□□□□□ -0.85
SYNE1-218ENST00000468937 DNAJC25Q9H1X3 360 aa9.77□□□□□ -0.85
SYNE1-218ENST00000468937 H3BRJ5 948 aa9.76□□□□□ -0.85
SYNE1-218ENST00000468937 TRPA1O75762 1119 aa9.76□□□□□ -0.85
SYNE1-218ENST00000468937 EPHA1P21709 976 aa9.76□□□□□ -0.85
SYNE1-218ENST00000468937 BSNDQ8WZ55 320 aa9.76□□□□□ -0.85
SYNE1-218ENST00000468937 NIF3L1Q9GZT8 377 aa9.76□□□□□ -0.85
SYNE1-218ENST00000468937 FSCN2O14926 492 aa9.75□□□□□ -0.85
SYNE1-218ENST00000468937 POLR3DP05423 398 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-218ENST00000468937 CDC25BP30305 580 aa9.75□□□□□ -0.85
SYNE1-218ENST00000468937 ARL4DP49703 201 aa9.75□□□□□ -0.85
SYNE1-218ENST00000468937 PIP4K2BP78356 416 aa9.75□□□□□ -0.85
SYNE1-218ENST00000468937 DOC2BQ14184 412 aa9.75□□□□□ -0.85
SYNE1-218ENST00000468937 PEAR1Q5VY43 1037 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-218ENST00000468937 TXNDC11Q6PKC3 985 aa9.75□□□□□ -0.85
SYNE1-218ENST00000468937 ALKBH8Q96BT7 664 aaKnown RBP9.75□□□□□ -0.85
SYNE1-218ENST00000468937 BHLHE41Q9C0J9 482 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-218ENST00000468937 SEC31BQ9NQW1 1179 aa9.75□□□□□ -0.85
SYNE1-218ENST00000468937 GPR182O15218 404 aa9.74□□□□□ -0.85
SYNE1-218ENST00000468937 MAPK1P28482 360 aa9.74□□□□□ -0.85
SYNE1-218ENST00000468937 CD68P34810 354 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-218ENST00000468937 ORC1Q13415 861 aa9.74□□□□□ -0.85
SYNE1-218ENST00000468937 TMEM130Q8N3G9 435 aa9.74□□□□□ -0.85
SYNE1-218ENST00000468937 WFDC12Q8WWY7 111 aa9.74□□□□□ -0.85
SYNE1-218ENST00000468937 HHIPQ96QV1 700 aa9.74□□□□□ -0.85
SYNE1-218ENST00000468937 OSGEPQ9NPF4 335 aa9.74□□□□□ -0.85
SYNE1-218ENST00000468937 SOX13Q9UN79 622 aa9.74□□□□□ -0.85
SYNE1-218ENST00000468937 ADAMTSL4Q6UY14 1074 aa9.73□□□□□ -0.85
SYNE1-218ENST00000468937 ASAP3Q8TDY4 903 aa9.73□□□□□ -0.85
SYNE1-218ENST00000468937 AKTIPQ9H8T0 292 aa9.73□□□□□ -0.85
SYNE1-218ENST00000468937 LATS2Q9NRM7 1088 aa9.73□□□□□ -0.85
SYNE1-218ENST00000468937 EIF1AYO14602 144 aaKnown RBP9.72□□□□□ -0.85
SYNE1-218ENST00000468937 EIF4EBP3O60516 100 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-218ENST00000468937 IGHA2P01877 340 aa9.72□□□□□ -0.85
SYNE1-218ENST00000468937 TMC7Q7Z402 723 aa9.72□□□□□ -0.85
SYNE1-218ENST00000468937 GALNT11Q8NCW6 608 aa9.72□□□□□ -0.85
SYNE1-218ENST00000468937 A0A1W2PP55 124 aa9.71□□□□□ -0.86
SYNE1-218ENST00000468937 K7ELQ4 463 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-218ENST00000468937 FURINP09958 794 aa9.71□□□□□ -0.86
SYNE1-218ENST00000468937 IREB2P48200 963 aaKnown RBP9.71□□□□□ -0.86
SYNE1-218ENST00000468937 IKBKEQ14164 716 aa9.71□□□□□ -0.86
SYNE1-218ENST00000468937 SUZ12Q15022 739 aaKnown RBP9.71□□□□□ -0.86
SYNE1-218ENST00000468937 KIAA0319Q5VV43 1072 aa9.71□□□□□ -0.86
SYNE1-218ENST00000468937 USPL1Q5W0Q7 1092 aa9.71□□□□□ -0.86
SYNE1-218ENST00000468937 ZSCAN29Q8IWY8 852 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-218ENST00000468937 CSRNP1Q96S65 589 aa9.71□□□□□ -0.86
SYNE1-218ENST00000468937 CARD10Q9BWT7 1032 aa9.71□□□□□ -0.86
SYNE1-218ENST00000468937 LIN7BQ9HAP6 207 aa9.71□□□□□ -0.86
SYNE1-218ENST00000468937 TPSG1Q9NRR2 321 aa9.71□□□□□ -0.86
SYNE1-218ENST00000468937 NOS3P29474 1203 aa9.7□□□□□ -0.86
SYNE1-218ENST00000468937 CCNJLQ8IV13 435 aa9.7□□□□□ -0.86
SYNE1-218ENST00000468937 CCDC74AQ96AQ1 378 aa9.7□□□□□ -0.86
SYNE1-218ENST00000468937 F8W735 103 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-218ENST00000468937 PLCB3Q01970 1234 aa9.69□□□□□ -0.86
SYNE1-218ENST00000468937 C19orf57Q0VDD7 668 aa9.69□□□□□ -0.86
SYNE1-218ENST00000468937 SLC7A3Q8WY07 619 aa9.69□□□□□ -0.86
SYNE1-218ENST00000468937 KLHDC7BQ96G42 594 aa9.69□□□□□ -0.86
SYNE1-218ENST00000468937 EHD4Q9H223 541 aa9.69□□□□□ -0.86
SYNE1-218ENST00000468937 NPHS2Q9NP85 383 aa9.69□□□□□ -0.86
SYNE1-218ENST00000468937 ADAM23O75077 832 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms