RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.09□□□□□ -0.95
COL6A3-208ENST00000468792 CNNM1Q9NRU3 951 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 CTNNA3Q9UI47 895 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 ARAP2Q8WZ64 1704 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 KCNQ2O43526 872 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 RPS6KA4O75676 772 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 UBE3CQ15386 1083 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 TMED8Q6PL24 325 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-208ENST00000468792 IFNLR1Q8IU57 520 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-208ENST00000468792 SYNE4Q8N205 404 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 LINC00116Q8NCU8 138 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 CERKQ8TCT0 537 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 APPBP2Q92624 585 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 GJD4Q96KN9 370 aaPredicted RBP9.08□□□□□ -0.96
COL6A3-208ENST00000468792 NEK1Q96PY6 1258 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 CDC5LQ99459 802 aaKnown RBP9.08□□□□□ -0.96
COL6A3-208ENST00000468792 LMBRD1Q9NUN5 540 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 NARFQ9UHQ1 456 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 NIP7Q9Y221 180 aaKnown RBP eCLIP9.08□□□□□ -0.96
COL6A3-208ENST00000468792 ATP6V1DQ9Y5K8 247 aa9.08□□□□□ -0.96
COL6A3-208ENST00000468792 DDX60Q8IY21 1712 aaKnown RBP9.08□□□□□ -0.96
COL6A3-208ENST00000468792 AKAP11Q9UKA4 1901 aa9.07□□□□□ -0.96
COL6A3-208ENST00000468792 CYP21A2P08686 494 aa9.07□□□□□ -0.96
COL6A3-208ENST00000468792 HSPD1P10809 573 aaKnown RBP9.07□□□□□ -0.96
COL6A3-208ENST00000468792 PDCP20941 246 aa9.07□□□□□ -0.96
COL6A3-208ENST00000468792 ADORA1P30542 326 aa9.07□□□□□ -0.96
COL6A3-208ENST00000468792 PKP1Q13835 747 aa9.07□□□□□ -0.96
COL6A3-208ENST00000468792 TMEM87AQ8NBN3 555 aa9.07□□□□□ -0.96
COL6A3-208ENST00000468792 RGS22Q8NE09 1264 aa9.07□□□□□ -0.96
COL6A3-208ENST00000468792 NYXQ9GZU5 481 aa9.07□□□□□ -0.96
COL6A3-208ENST00000468792 SCN7AQ01118 1682 aa9.07□□□□□ -0.96
COL6A3-208ENST00000468792 MAST3O60307 1309 aa9.06□□□□□ -0.96
COL6A3-208ENST00000468792 ZMYM6O95789 1325 aa9.06□□□□□ -0.96
COL6A3-208ENST00000468792 WDR19Q8NEZ3 1342 aa9.06□□□□□ -0.96
COL6A3-208ENST00000468792 LY75O60449 1722 aa9.06□□□□□ -0.96
COL6A3-208ENST00000468792 MBD3O95983 291 aa9.06□□□□□ -0.96
COL6A3-208ENST00000468792 SLC5A1P13866 664 aa9.06□□□□□ -0.96
COL6A3-208ENST00000468792 IGHMBP2P38935 993 aaKnown RBP9.06□□□□□ -0.96
COL6A3-208ENST00000468792 EVCP57679 992 aa9.06□□□□□ -0.96
COL6A3-208ENST00000468792 EXOSC10Q01780 885 aaKnown RBP9.06□□□□□ -0.96
COL6A3-208ENST00000468792 ME3Q16798 604 aa9.06□□□□□ -0.96
COL6A3-208ENST00000468792 CCDC102BQ68D86 513 aa9.06□□□□□ -0.96
COL6A3-208ENST00000468792 DHX32Q7L7V1 743 aaKnown RBP9.06□□□□□ -0.96
COL6A3-208ENST00000468792 SEC62Q99442 399 aaKnown RBP9.06□□□□□ -0.96
COL6A3-208ENST00000468792 MPHOSPH8Q99549 860 aa9.06□□□□□ -0.96
COL6A3-208ENST00000468792 LLPHQ9BRT6 129 aaKnown RBP9.06□□□□□ -0.96
COL6A3-208ENST00000468792 TRPC5Q9UL62 973 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-208ENST00000468792 SMC3Q9UQE7 1217 aa9.06□□□□□ -0.96
COL6A3-208ENST00000468792 BTAF1O14981 1849 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 STX6O43752 255 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 ZSCAN22P10073 491 aaPredicted RBP9.05□□□□□ -0.96
COL6A3-208ENST00000468792 SYT1P21579 422 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 ADD2P35612 726 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 MCAMP43121 646 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 ZAP70P43403 619 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 FKBP4Q02790 459 aaKnown RBP eCLIP9.05□□□□□ -0.96
COL6A3-208ENST00000468792 TOB2Q14106 344 aaPredicted RBP9.05□□□□□ -0.96
COL6A3-208ENST00000468792 UBE4AQ14139 1066 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 ALX1Q15699 326 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 OSBP2Q969R2 916 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 BSDC1Q9NW68 430 aaPredicted RBP9.05□□□□□ -0.96
COL6A3-208ENST00000468792 TPCN1Q9ULQ1 816 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 MYH7P12883 1935 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 COL24A1Q17RW2 1714 aa9.05□□□□□ -0.96
COL6A3-208ENST00000468792 PDS5AQ29RF7 1337 aaKnown RBP9.05□□□□□ -0.96
COL6A3-208ENST00000468792 CARMIL3Q8ND23 1372 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 GOLGA6L3A6NEY3 463 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 SPDYE2BA6NHP3 402 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 SPDYE6P0CI01 402 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 HCLS1P14317 486 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-208ENST00000468792 MRE11P49959 708 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 ZNF445P59923 1031 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 SCARF1Q14162 830 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 CSPP1Q1MSJ5 1256 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 SPDYE2Q495Y8 402 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 MCTP1Q6DN14 999 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 ZNF274Q96GC6 653 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-208ENST00000468792 CCDC85AQ96PX6 553 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-208ENST00000468792 BCL11BQ9C0K0 894 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-208ENST00000468792 BCL2L12Q9HB09 334 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 NDUFB9Q9Y6M9 179 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 DDX49Q9Y6V7 483 aaKnown RBP9.04□□□□□ -0.96
COL6A3-208ENST00000468792 ZNF804BA4D1E1 1349 aa9.04□□□□□ -0.96
COL6A3-208ENST00000468792 SBF2Q86WG5 1849 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 TCRBV5S4A2TA0A5A2 114 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 E7EWF7 191 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 M0R2C6 588 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 SEMA3EO15041 775 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 PFKFB2O60825 505 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 CPA1P15085 419 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 GJB2P29033 226 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 ST3GAL1Q11201 340 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 MAP3K12Q12852 859 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 IMMTQ16891 758 aaKnown RBP9.03□□□□□ -0.96
COL6A3-208ENST00000468792 CCDC129Q6ZRS4 1044 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 SPATA5Q8NB90 893 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 GTF3C6Q969F1 213 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 MTMR6Q9Y217 621 aa9.03□□□□□ -0.96
COL6A3-208ENST00000468792 RTCBQ9Y3I0 505 aaKnown RBP9.03□□□□□ -0.96
COL6A3-208ENST00000468792 FOXP2O15409 715 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms