RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 OFD1O75665 1012 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 CTDNEP1O95476 244 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 ZAP70P43403 619 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 FOSBP53539 338 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 RESTQ13127 1097 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 WASHC4Q2M389 1173 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 TICAM2Q86XR7 235 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 NSUN7Q8NE18 718 aaKnown RBP10.56□□□□□ -0.72
SYNE1-217ENST00000466159 SMARCC2Q8TAQ2 1214 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 GREM2Q9H772 168 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 NCOA5Q9HCD5 579 aaKnown RBP10.56□□□□□ -0.72
SYNE1-217ENST00000466159 NAP1L2Q9ULW6 460 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-217ENST00000466159 SPEF2Q9C093 1822 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 FOXP2O15409 715 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 ADCY5O95622 1261 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 NLRP10Q86W26 655 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 AGXT2Q9BYV1 514 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 FBXO3Q9UK99 471 aa10.56□□□□□ -0.72
SYNE1-217ENST00000466159 GOLGA6L4A6NEF3 574 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 CYP19A1P11511 503 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-217ENST00000466159 ITGA6P23229 1130 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 HAND2P61296 217 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 LDHAL6AQ6ZMR3 332 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 TTLL11Q8NHH1 800 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 SYTL4Q96C24 671 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-217ENST00000466159 PGBD1Q96JS3 809 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 DACT1Q9NYF0 836 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 RIPOR2Q9Y4F9 1068 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 NHSL1Q5SYE7 1610 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 PTPDC1A2A3K4 754 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 KDM4AO75164 1064 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 PLCB2Q00722 1185 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 METTL24Q5JXM2 366 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 LLPHQ9BRT6 129 aaKnown RBP10.55□□□□□ -0.72
SYNE1-217ENST00000466159 PUS7LQ9H0K6 701 aaKnown RBP10.55□□□□□ -0.72
SYNE1-217ENST00000466159 NUP62CLQ9H1M0 184 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 GPHNQ9NQX3 736 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-217ENST00000466159 ZBTB1Q9Y2K1 713 aa10.55□□□□□ -0.72
SYNE1-217ENST00000466159 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.55□□□□□ -0.72
SYNE1-217ENST00000466159 CCDC192P0DO97 292 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 PDIA3P30101 505 aaKnown RBP10.54□□□□□ -0.72
SYNE1-217ENST00000466159 MCM5P33992 734 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 ATP2B3Q16720 1220 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 CKAP2LQ8IYA6 745 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.54□□□□□ -0.72
SYNE1-217ENST00000466159 RIC1Q4ADV7 1423 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 AP5Z1O43299 807 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 FGAP02671 866 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 CEBPZQ03701 1054 aaKnown RBP10.54□□□□□ -0.72
SYNE1-217ENST00000466159 MAP3K11Q16584 847 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 ZNF830Q96NB3 372 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-217ENST00000466159 TBC1D2BQ9UPU7 963 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 CDHR2Q9BYE9 1310 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 BCL9O00512 1426 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 NWD2Q9ULI1 1742 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 IRS4O14654 1257 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-217ENST00000466159 NR1I2O75469 434 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 MCAMP43121 646 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 CTSWP56202 376 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 TNMDQ9H2S6 317 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 ZSCAN16Q9H4T2 348 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-217ENST00000466159 CNNM1Q9NRU3 951 aa10.54□□□□□ -0.72
SYNE1-217ENST00000466159 TRMT112Q9UI30 125 aaKnown RBP10.54□□□□□ -0.72
SYNE1-217ENST00000466159 ANKRD18BA2A2Z9 1011 aa10.53□□□□□ -0.72
SYNE1-217ENST00000466159 ZFYP08048 801 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-217ENST00000466159 ADD1P35611 737 aaKnown RBP10.53□□□□□ -0.72
SYNE1-217ENST00000466159 LRRFIP1Q32MZ4 808 aaKnown RBP10.53□□□□□ -0.72
SYNE1-217ENST00000466159 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-217ENST00000466159 BICD2Q8TD16 824 aa10.53□□□□□ -0.72
SYNE1-217ENST00000466159 APPBP2Q92624 585 aa10.53□□□□□ -0.72
SYNE1-217ENST00000466159 FTOQ9C0B1 505 aaKnown RBP eCLIP10.53□□□□□ -0.72
SYNE1-217ENST00000466159 DISP2A7MBM2 1401 aa10.53□□□□□ -0.72
SYNE1-217ENST00000466159 SALL1Q9NSC2 1324 aa10.53□□□□□ -0.72
SYNE1-217ENST00000466159 HMGN5P82970 282 aaKnown RBP10.53□□□□□ -0.72
SYNE1-217ENST00000466159 GUCY1B3Q02153 619 aa10.53□□□□□ -0.72
SYNE1-217ENST00000466159 TYRO3Q06418 890 aa10.53□□□□□ -0.72
SYNE1-217ENST00000466159 IMMTQ16891 758 aaKnown RBP10.53□□□□□ -0.72
SYNE1-217ENST00000466159 KLHL34Q8N239 644 aa10.53□□□□□ -0.72
SYNE1-217ENST00000466159 ZNF274Q96GC6 653 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-217ENST00000466159 CTNNA3Q9UI47 895 aa10.53□□□□□ -0.72
SYNE1-217ENST00000466159 MRVI1Q9Y6F6 885 aa10.53□□□□□ -0.72
SYNE1-217ENST00000466159 AKAP11Q9UKA4 1901 aa10.52□□□□□ -0.72
SYNE1-217ENST00000466159 EXOC5O00471 708 aa10.52□□□□□ -0.73
SYNE1-217ENST00000466159 GPAA1O43292 621 aa10.52□□□□□ -0.73
SYNE1-217ENST00000466159 NAA16Q6N069 864 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-217ENST00000466159 VGLL2Q8N8G2 317 aa10.52□□□□□ -0.73
SYNE1-217ENST00000466159 CFAP45Q9UL16 551 aa10.52□□□□□ -0.73
SYNE1-217ENST00000466159 NUP98P52948 1817 aa10.52□□□□□ -0.73
SYNE1-217ENST00000466159 LRP6O75581 1613 aa10.52□□□□□ -0.73
SYNE1-217ENST00000466159 MYH3P11055 1940 aa10.52□□□□□ -0.73
SYNE1-217ENST00000466159 MYH7P12883 1935 aa10.52□□□□□ -0.73
SYNE1-217ENST00000466159 UBN2Q6ZU65 1347 aa10.52□□□□□ -0.73
SYNE1-217ENST00000466159 DZIP3Q86Y13 1208 aaKnown RBP10.52□□□□□ -0.73
SYNE1-217ENST00000466159 CLSTN2Q9H4D0 955 aa10.52□□□□□ -0.73
SYNE1-217ENST00000466159 TTC12Q9H892 705 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-217ENST00000466159 DDX19AQ9NUU7 478 aaKnown RBP10.52□□□□□ -0.73
SYNE1-217ENST00000466159 R3HCC1Q9Y3T6 440 aaKnown RBP10.52□□□□□ -0.73
SYNE1-217ENST00000466159 MYO5AQ9Y4I1 1855 aaKnown RBP10.51□□□□□ -0.73
SYNE1-217ENST00000466159 FDPSP14324 419 aaKnown RBP10.51□□□□□ -0.73
SYNE1-217ENST00000466159 MYH15Q9Y2K3 1946 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms