RNA–Protein interactions for RNA: ENST00000465756.5

NPHP3-203, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 3,852 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-203ENST00000465756 CXCL9Q07325 125 aa13.31□□□□□ -0.28
NPHP3-203ENST00000465756 TAF1DQ9H5J8 278 aaPredicted RBP13.31□□□□□ -0.28
NPHP3-203ENST00000465756 STRIP1Q5VSL9 837 aa13.31□□□□□ -0.28
NPHP3-203ENST00000465756 NBPF7P0C2Y1 421 aaPredicted RBP13.31□□□□□ -0.28
NPHP3-203ENST00000465756 MVPQ14764 893 aaKnown RBP13.31□□□□□ -0.28
NPHP3-203ENST00000465756 DOK7Q18PE1 504 aa13.31□□□□□ -0.28
NPHP3-203ENST00000465756 GMPSP49915 693 aaPredicted RBP13.3□□□□□ -0.28
NPHP3-203ENST00000465756 NOL10Q9BSC4 688 aaKnown RBP13.3□□□□□ -0.28
NPHP3-203ENST00000465756 SPTY2D1Q68D10 685 aaPredicted RBP13.3□□□□□ -0.28
NPHP3-203ENST00000465756 DICER1Q9UPY3 1922 aaKnown RBP13.3□□□□□ -0.28
NPHP3-203ENST00000465756 SEMA3EO15041 775 aa13.3□□□□□ -0.28
NPHP3-203ENST00000465756 BCAR3O75815 825 aa13.3□□□□□ -0.28
NPHP3-203ENST00000465756 HSPA6P17066 643 aa13.3□□□□□ -0.28
NPHP3-203ENST00000465756 RSBN1LQ6PCB5 846 aaPredicted RBP13.3□□□□□ -0.28
NPHP3-203ENST00000465756 SULF1Q8IWU6 871 aa13.3□□□□□ -0.28
NPHP3-203ENST00000465756 LPIN2Q92539 896 aa13.3□□□□□ -0.28
NPHP3-203ENST00000465756 HOOK2Q96ED9 719 aa13.3□□□□□ -0.28
NPHP3-203ENST00000465756 IGSF3O75054 1194 aa13.29□□□□□ -0.28
NPHP3-203ENST00000465756 USP17L8P0C7I0 530 aa13.29□□□□□ -0.28
NPHP3-203ENST00000465756 FKBP1AP62942 108 aaKnown RBP13.29□□□□□ -0.28
NPHP3-203ENST00000465756 ATP2B3Q16720 1220 aa13.29□□□□□ -0.28
NPHP3-203ENST00000465756 RPAP2Q8IXW5 612 aaPredicted RBP13.29□□□□□ -0.28
NPHP3-203ENST00000465756 GPRC5DQ9NZD1 345 aa13.29□□□□□ -0.28
NPHP3-203ENST00000465756 KIF3CO14782 793 aa13.29□□□□□ -0.28
NPHP3-203ENST00000465756 POLLQ9UGP5 575 aa13.29□□□□□ -0.28
NPHP3-203ENST00000465756 CNOT7Q9UIV1 285 aaKnown RBP13.29□□□□□ -0.28
NPHP3-203ENST00000465756 ZNF541Q9H0D2 1346 aa13.29□□□□□ -0.28
NPHP3-203ENST00000465756 DDX60Q8IY21 1712 aaKnown RBP13.29□□□□□ -0.28
NPHP3-203ENST00000465756 TTLL5Q6EMB2 1281 aa13.29□□□□□ -0.28
NPHP3-203ENST00000465756 WDR66Q8TBY9 1149 aa13.29□□□□□ -0.28
NPHP3-203ENST00000465756 OLFM4Q6UX06 510 aa13.28□□□□□ -0.28
NPHP3-203ENST00000465756 TMEM57Q8N5G2 664 aa13.28□□□□□ -0.28
NPHP3-203ENST00000465756 COPRSQ9NQ92 184 aa13.28□□□□□ -0.28
NPHP3-203ENST00000465756 TIAM2Q8IVF5 1701 aa13.28□□□□□ -0.28
NPHP3-203ENST00000465756 UQCRFS1P1P0C7P4 283 aa13.28□□□□□ -0.28
NPHP3-203ENST00000465756 TNNI2P48788 182 aa13.28□□□□□ -0.28
NPHP3-203ENST00000465756 SUGT1Q9Y2Z0 365 aa13.28□□□□□ -0.28
NPHP3-203ENST00000465756 PDE8BO95263 885 aa13.27□□□□□ -0.28
NPHP3-203ENST00000465756 TNFAIP1Q13829 316 aa13.27□□□□□ -0.28
NPHP3-203ENST00000465756 CDC37L1Q7L3B6 337 aa13.27□□□□□ -0.28
NPHP3-203ENST00000465756 PSMD14O00487 310 aa13.27□□□□□ -0.29
NPHP3-203ENST00000465756 CCDC158Q5M9N0 1113 aa13.27□□□□□ -0.29
NPHP3-203ENST00000465756 MICALL2Q8IY33 904 aa13.27□□□□□ -0.29
NPHP3-203ENST00000465756 MEIS3Q99687 375 aa13.27□□□□□ -0.29
NPHP3-203ENST00000465756 DENND2AQ9ULE3 1009 aa13.27□□□□□ -0.29
NPHP3-203ENST00000465756 MTX1Q13505 466 aa13.27□□□□□ -0.29
NPHP3-203ENST00000465756 DLGAP5Q15398 846 aa13.27□□□□□ -0.29
NPHP3-203ENST00000465756 CD209Q9NNX6 404 aa13.27□□□□□ -0.29
NPHP3-203ENST00000465756 SBF1O95248 1867 aa13.26□□□□□ -0.29
NPHP3-203ENST00000465756 VIL1P09327 827 aaKnown RBP13.26□□□□□ -0.29
NPHP3-203ENST00000465756 ECE1P42892 770 aa13.26□□□□□ -0.29
NPHP3-203ENST00000465756 KIF4BQ2VIQ3 1234 aa13.26□□□□□ -0.29
NPHP3-203ENST00000465756 APOBEC3FQ8IUX4 373 aaKnown RBP13.26□□□□□ -0.29
NPHP3-203ENST00000465756 GPATCH3Q96I76 525 aa13.26□□□□□ -0.29
NPHP3-203ENST00000465756 LDHCP07864 332 aa13.26□□□□□ -0.29
NPHP3-203ENST00000465756 RBM5P52756 815 aaKnown RBP eCLIP13.26□□□□□ -0.29
NPHP3-203ENST00000465756 ANKRD44Q8N8A2 993 aa13.26□□□□□ -0.29
NPHP3-203ENST00000465756 SCN4AP35499 1836 aa13.26□□□□□ -0.29
NPHP3-203ENST00000465756 GTF2IP78347 998 aa13.26□□□□□ -0.29
NPHP3-203ENST00000465756 WDR90Q96KV7 1748 aa13.26□□□□□ -0.29
NPHP3-203ENST00000465756 SURF6O75683 361 aaKnown RBP13.25□□□□□ -0.29
NPHP3-203ENST00000465756 HELBQ8NG08 1087 aaPredicted RBP13.25□□□□□ -0.29
NPHP3-203ENST00000465756 ZNF594Q96JF6 807 aaPredicted RBP13.25□□□□□ -0.29
NPHP3-203ENST00000465756 ATP8B2P98198 1209 aa13.25□□□□□ -0.29
NPHP3-203ENST00000465756 SIL1Q9H173 461 aa13.25□□□□□ -0.29
NPHP3-203ENST00000465756 CCDC88AQ3V6T2 1871 aa13.25□□□□□ -0.29
NPHP3-203ENST00000465756 GSTO1P78417 241 aa13.25□□□□□ -0.29
NPHP3-203ENST00000465756 CHAF1AQ13111 956 aaPredicted RBP13.25□□□□□ -0.29
NPHP3-203ENST00000465756 EPHA10Q5JZY3 1008 aa13.24□□□□□ -0.29
NPHP3-203ENST00000465756 NEUROD6Q96NK8 337 aa13.24□□□□□ -0.29
NPHP3-203ENST00000465756 RAB11FIP3O75154 756 aa13.24□□□□□ -0.29
NPHP3-203ENST00000465756 TAF5LO75529 589 aa13.24□□□□□ -0.29
NPHP3-203ENST00000465756 PRKCSHP14314 528 aaPredicted RBP13.24□□□□□ -0.29
NPHP3-203ENST00000465756 RBM26Q5T8P6 1007 aaKnown RBP13.24□□□□□ -0.29
NPHP3-203ENST00000465756 LRRC37AA6NMS7 1700 aa13.24□□□□□ -0.29
NPHP3-203ENST00000465756 PAXIP1Q6ZW49 1069 aaPredicted RBP13.24□□□□□ -0.29
NPHP3-203ENST00000465756 BEGAINQ9BUH8 593 aa13.24□□□□□ -0.29
NPHP3-203ENST00000465756 GPR108Q9NPR9 543 aa13.24□□□□□ -0.29
NPHP3-203ENST00000465756 RIPOR2Q9Y4F9 1068 aa13.24□□□□□ -0.29
NPHP3-203ENST00000465756 C2orf69Q8N8R5 385 aa13.23□□□□□ -0.29
NPHP3-203ENST00000465756 LRRFIP1Q32MZ4 808 aaKnown RBP13.23□□□□□ -0.29
NPHP3-203ENST00000465756 CNTROBQ8N137 903 aa13.23□□□□□ -0.29
NPHP3-203ENST00000465756 SASH1O94885 1247 aa13.23□□□□□ -0.29
NPHP3-203ENST00000465756 TMED8Q6PL24 325 aaPredicted RBP13.23□□□□□ -0.29
NPHP3-203ENST00000465756 CLASRPQ8N2M8 674 aaKnown RBP13.23□□□□□ -0.29
NPHP3-203ENST00000465756 HDLBPQ00341 1268 aaKnown RBP13.22□□□□□ -0.29
NPHP3-203ENST00000465756 TTC39AQ5SRH9 613 aa13.22□□□□□ -0.29
NPHP3-203ENST00000465756 PPP2R3BQ9Y5P8 575 aa13.22□□□□□ -0.29
NPHP3-203ENST00000465756 ZNF609O15014 1411 aa13.22□□□□□ -0.29
NPHP3-203ENST00000465756 IL1R1P14778 569 aa13.22□□□□□ -0.29
NPHP3-203ENST00000465756 AIDAQ96BJ3 306 aa13.22□□□□□ -0.29
NPHP3-203ENST00000465756 ABT1Q9ULW3 272 aaKnown RBP13.22□□□□□ -0.29
NPHP3-203ENST00000465756 FAM205AQ6ZU69 1335 aa13.22□□□□□ -0.29
NPHP3-203ENST00000465756 PITPNM2Q9BZ72 1349 aa13.22□□□□□ -0.29
NPHP3-203ENST00000465756 TMEM88BA6NKF7 163 aa13.22□□□□□ -0.29
NPHP3-203ENST00000465756 CERS3Q8IU89 383 aa13.22□□□□□ -0.29
NPHP3-203ENST00000465756 MFSD14BQ5SR56 506 aa13.21□□□□□ -0.29
NPHP3-203ENST00000465756 EPS15P42566 896 aa13.21□□□□□ -0.29
NPHP3-203ENST00000465756 PTPN12Q05209 780 aaKnown RBP13.21□□□□□ -0.29
NPHP3-203ENST00000465756 SUPT20HL1Q3ZLR7 823 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms