RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 UBE3BQ7Z3V4 1068 aa22.37■■□□□ 1.17
COL7A1-205ENST00000465238 AGBL3Q8NEM8 1001 aa22.37■■□□□ 1.17
COL7A1-205ENST00000465238 SPEF2Q9C093 1822 aa22.36■■□□□ 1.17
COL7A1-205ENST00000465238 IPO8O15397 1037 aaKnown RBP22.36■■□□□ 1.17
COL7A1-205ENST00000465238 BCAR3O75815 825 aa22.36■■□□□ 1.17
COL7A1-205ENST00000465238 BEND3Q5T5X7 828 aa22.36■■□□□ 1.17
COL7A1-205ENST00000465238 RSBN1LQ6PCB5 846 aaPredicted RBP22.36■■□□□ 1.17
COL7A1-205ENST00000465238 PODNQ7Z5L7 613 aa22.36■■□□□ 1.17
COL7A1-205ENST00000465238 MINPP1Q9UNW1 487 aa22.36■■□□□ 1.17
COL7A1-205ENST00000465238 AOC2O75106 756 aa22.35■■□□□ 1.17
COL7A1-205ENST00000465238 GCKRQ14397 625 aa22.35■■□□□ 1.17
COL7A1-205ENST00000465238 PLA2G12BQ9BX93 195 aa22.35■■□□□ 1.17
COL7A1-205ENST00000465238 API5Q9BZZ5 524 aaKnown RBP22.35■■□□□ 1.17
COL7A1-205ENST00000465238 SRCIN1Q9C0H9 1055 aa22.35■■□□□ 1.17
COL7A1-205ENST00000465238 ZNF280AP59817 542 aaPredicted RBP22.34■■□□□ 1.17
COL7A1-205ENST00000465238 ARHGAP45Q92619 1136 aa22.34■■□□□ 1.17
COL7A1-205ENST00000465238 FRAT1Q92837 279 aaPredicted RBP22.34■■□□□ 1.17
COL7A1-205ENST00000465238 MED23Q9ULK4 1368 aa22.34■■□□□ 1.17
COL7A1-205ENST00000465238 USP17L3A6NCW0 530 aa22.33■■□□□ 1.17
COL7A1-205ENST00000465238 USP17L4A6NCW7 530 aa22.33■■□□□ 1.17
COL7A1-205ENST00000465238 ALDH1L1O75891 902 aa22.33■■□□□ 1.17
COL7A1-205ENST00000465238 HUNKP57058 714 aa22.33■■□□□ 1.17
COL7A1-205ENST00000465238 USP17L1Q7RTZ2 530 aa22.33■■□□□ 1.17
COL7A1-205ENST00000465238 CA12O43570 354 aa22.32■■□□□ 1.16
COL7A1-205ENST00000465238 IGHMBP2P38935 993 aaKnown RBP22.32■■□□□ 1.16
COL7A1-205ENST00000465238 CCT4P50991 539 aaKnown RBP22.32■■□□□ 1.16
COL7A1-205ENST00000465238 DLK2Q6UY11 383 aa22.32■■□□□ 1.16
COL7A1-205ENST00000465238 SULF1Q8IWU6 871 aa22.32■■□□□ 1.16
COL7A1-205ENST00000465238 GMLQ99445 158 aa22.32■■□□□ 1.16
COL7A1-205ENST00000465238 GGA3Q9NZ52 723 aa22.32■■□□□ 1.16
COL7A1-205ENST00000465238 ADM5C9JUS6 153 aa22.31■■□□□ 1.16
COL7A1-205ENST00000465238 USP17L8P0C7I0 530 aa22.31■■□□□ 1.16
COL7A1-205ENST00000465238 CASP7P55210 303 aa22.31■■□□□ 1.16
COL7A1-205ENST00000465238 NOGQ13253 232 aa22.31■■□□□ 1.16
COL7A1-205ENST00000465238 C2orf69Q8N8R5 385 aa22.31■■□□□ 1.16
COL7A1-205ENST00000465238 GBA2Q9HCG7 927 aaPredicted RBP22.31■■□□□ 1.16
COL7A1-205ENST00000465238 LEMD3Q9Y2U8 911 aa22.31■■□□□ 1.16
COL7A1-205ENST00000465238 WTIPA6NIX2 430 aaPredicted RBP22.3■■□□□ 1.16
COL7A1-205ENST00000465238 CSF1RP07333 972 aa22.3■■□□□ 1.16
COL7A1-205ENST00000465238 ITGA6P23229 1130 aa22.3■■□□□ 1.16
COL7A1-205ENST00000465238 C9orf78Q9NZ63 289 aaPredicted RBP22.3■■□□□ 1.16
COL7A1-205ENST00000465238 ZKSCAN2Q63HK3 967 aa22.29■■□□□ 1.16
COL7A1-205ENST00000465238 ANKRD2Q9GZV1 360 aa22.29■■□□□ 1.16
COL7A1-205ENST00000465238 MYOZ2Q9NPC6 264 aa22.29■■□□□ 1.16
COL7A1-205ENST00000465238 RCAN3Q9UKA8 241 aa22.29■■□□□ 1.16
COL7A1-205ENST00000465238 SCARF1Q14162 830 aa22.28■■□□□ 1.16
COL7A1-205ENST00000465238 FAM161AQ3B820 660 aa22.28■■□□□ 1.16
COL7A1-205ENST00000465238 RGMBQ6NW40 437 aa22.28■■□□□ 1.16
COL7A1-205ENST00000465238 ATF7IPQ6VMQ6 1270 aa22.28■■□□□ 1.16
COL7A1-205ENST00000465238 MPHOSPH8Q99549 860 aa22.28■■□□□ 1.16
COL7A1-205ENST00000465238 COA1Q9GZY4 146 aa22.28■■□□□ 1.16
COL7A1-205ENST00000465238 ASTN2O75129 1339 aaPredicted RBP22.28■■□□□ 1.16
COL7A1-205ENST00000465238 GRM8O00222 908 aa22.27■■□□□ 1.16
COL7A1-205ENST00000465238 ANGEL2Q5VTE6 544 aaKnown RBP22.27■■□□□ 1.16
COL7A1-205ENST00000465238 MYO3BQ8WXR4 1341 aa22.27■■□□□ 1.16
COL7A1-205ENST00000465238 DACT2Q5SW24 774 aa22.26■■□□□ 1.15
COL7A1-205ENST00000465238 STRIP1Q5VSL9 837 aa22.26■■□□□ 1.15
COL7A1-205ENST00000465238 CCDC102AQ96A19 550 aa22.26■■□□□ 1.15
COL7A1-205ENST00000465238 CDCA5Q96FF9 252 aa22.26■■□□□ 1.15
COL7A1-205ENST00000465238 ZNF804BA4D1E1 1349 aa22.26■■□□□ 1.15
COL7A1-205ENST00000465238 PITPNM2Q9BZ72 1349 aa22.26■■□□□ 1.15
COL7A1-205ENST00000465238 ZNF646O15015 1829 aaPredicted RBP22.25■■□□□ 1.15
COL7A1-205ENST00000465238 TRIM27P14373 513 aa22.25■■□□□ 1.15
COL7A1-205ENST00000465238 OGFOD1Q8N543 542 aa22.25■■□□□ 1.15
COL7A1-205ENST00000465238 TSKSQ9UJT2 592 aa22.25■■□□□ 1.15
COL7A1-205ENST00000465238 ANKRD18BA2A2Z9 1011 aa22.24■■□□□ 1.15
COL7A1-205ENST00000465238 MMP14P50281 582 aa22.24■■□□□ 1.15
COL7A1-205ENST00000465238 TXNRD3Q86VQ6 643 aa22.24■■□□□ 1.15
COL7A1-205ENST00000465238 FAM155AB1AL88 458 aaPredicted RBP22.23■■□□□ 1.15
COL7A1-205ENST00000465238 ZNF157P51786 506 aaPredicted RBP22.23■■□□□ 1.15
COL7A1-205ENST00000465238 CLUAP1Q96AJ1 413 aa22.23■■□□□ 1.15
COL7A1-205ENST00000465238 ABHD8Q96I13 439 aa22.23■■□□□ 1.15
COL7A1-205ENST00000465238 ZIC5Q96T25 663 aa22.23■■□□□ 1.15
COL7A1-205ENST00000465238 KCNJ4P48050 445 aa22.22■■□□□ 1.15
COL7A1-205ENST00000465238 FKBP1BP68106 108 aa22.22■■□□□ 1.15
COL7A1-205ENST00000465238 CHRNDQ07001 517 aa22.22■■□□□ 1.15
COL7A1-205ENST00000465238 FBXW7Q969H0 707 aa22.22■■□□□ 1.15
COL7A1-205ENST00000465238 FOXO4P98177 505 aa22.21■■□□□ 1.15
COL7A1-205ENST00000465238 IFIT5Q13325 482 aaKnown RBP22.21■■□□□ 1.15
COL7A1-205ENST00000465238 INTS3Q68E01 1043 aaKnown RBP22.21■■□□□ 1.15
COL7A1-205ENST00000465238 TTLL5Q6EMB2 1281 aa22.21■■□□□ 1.15
COL7A1-205ENST00000465238 FTSJ3Q8IY81 847 aaKnown RBP22.21■■□□□ 1.15
COL7A1-205ENST00000465238 MXD3Q9BW11 206 aa22.21■■□□□ 1.15
COL7A1-205ENST00000465238 TNNQ9UQP3 1299 aa22.21■■□□□ 1.15
COL7A1-205ENST00000465238 CASP8AP2Q9UKL3 1982 aa22.2■■□□□ 1.14
COL7A1-205ENST00000465238 NBPF7P0C2Y1 421 aaPredicted RBP22.2■■□□□ 1.14
COL7A1-205ENST00000465238 KLRK1P26718 216 aa22.2■■□□□ 1.14
COL7A1-205ENST00000465238 NBPF9Q3BBW0 867 aa22.2■■□□□ 1.14
COL7A1-205ENST00000465238 USP44Q9H0E7 712 aa22.2■■□□□ 1.14
COL7A1-205ENST00000465238 UTYO14607 1347 aa22.2■■□□□ 1.14
COL7A1-205ENST00000465238 PAPPA2Q9BXP8 1791 aa22.2■■□□□ 1.14
COL7A1-205ENST00000465238 SLC10A3P09131 477 aa22.19■■□□□ 1.14
COL7A1-205ENST00000465238 MS4A1P11836 297 aa22.19■■□□□ 1.14
COL7A1-205ENST00000465238 KIF23Q02241 960 aaPredicted RBP22.19■■□□□ 1.14
COL7A1-205ENST00000465238 DZIP1LQ8IYY4 767 aaKnown RBP22.19■■□□□ 1.14
COL7A1-205ENST00000465238 CHMP3Q9Y3E7 222 aa22.19■■□□□ 1.14
COL7A1-205ENST00000465238 WNT10BO00744 389 aa22.18■■□□□ 1.14
COL7A1-205ENST00000465238 C15orf52Q6ZUT6 534 aaKnown RBP22.18■■□□□ 1.14
COL7A1-205ENST00000465238 A0A1B0GUL6 1792 aa22.17■■□□□ 1.14
COL7A1-205ENST00000465238 GTF2IP78347 998 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms