RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 MUC3BQ9H195 1237 aa7.22□□□□□ -1.25
CLK1-208ENST00000464454 DZANK1Q9NVP4 752 aa7.22□□□□□ -1.25
CLK1-208ENST00000464454 PTPRAP18433 802 aa7.21□□□□□ -1.26
CLK1-208ENST00000464454 IRS1P35568 1242 aa7.21□□□□□ -1.26
CLK1-208ENST00000464454 RAC1P63000 192 aa7.21□□□□□ -1.26
CLK1-208ENST00000464454 FGD1P98174 961 aa7.21□□□□□ -1.26
CLK1-208ENST00000464454 ATP2B2Q01814 1243 aa7.21□□□□□ -1.26
CLK1-208ENST00000464454 ENOX2Q16206 610 aaKnown RBP7.21□□□□□ -1.26
CLK1-208ENST00000464454 GRIK5Q16478 980 aa7.21□□□□□ -1.26
CLK1-208ENST00000464454 TRAPPC3LQ5T215 181 aa7.21□□□□□ -1.26
CLK1-208ENST00000464454 GDF6Q6KF10 455 aaPredicted RBP7.21□□□□□ -1.26
CLK1-208ENST00000464454 DTWD1Q8N5C7 304 aa7.21□□□□□ -1.26
CLK1-208ENST00000464454 DCAF11Q8TEB1 546 aa7.21□□□□□ -1.26
CLK1-208ENST00000464454 CCDC74AQ96AQ1 378 aa7.21□□□□□ -1.26
CLK1-208ENST00000464454 ZKSCAN3Q9BRR0 538 aa7.21□□□□□ -1.26
CLK1-208ENST00000464454 PNMA6FA0A0J9YX94 578 aa7.2□□□□□ -1.26
CLK1-208ENST00000464454 ANKRD33BA6NCL7 494 aa7.2□□□□□ -1.26
CLK1-208ENST00000464454 PDE2AO00408 941 aaPredicted RBP7.2□□□□□ -1.26
CLK1-208ENST00000464454 POLR3DP05423 398 aaPredicted RBP7.2□□□□□ -1.26
CLK1-208ENST00000464454 MAPK8P45983 427 aa7.2□□□□□ -1.26
CLK1-208ENST00000464454 USPL1Q5W0Q7 1092 aa7.2□□□□□ -1.26
CLK1-208ENST00000464454 FBF1Q8TES7 1133 aa7.2□□□□□ -1.26
CLK1-208ENST00000464454 SRA1Q9HD15 236 aaKnown RBP7.2□□□□□ -1.26
CLK1-208ENST00000464454 TRIM33Q9UPN9 1127 aa7.2□□□□□ -1.26
CLK1-208ENST00000464454 NFKBIEO00221 500 aa7.19□□□□□ -1.26
CLK1-208ENST00000464454 SPATA31C1P0DKV0 1188 aa7.19□□□□□ -1.26
CLK1-208ENST00000464454 ACPPP15309 386 aa7.19□□□□□ -1.26
CLK1-208ENST00000464454 CDC27P30260 824 aa7.19□□□□□ -1.26
CLK1-208ENST00000464454 TRIM28Q13263 835 aaKnown RBP7.19□□□□□ -1.26
CLK1-208ENST00000464454 KIAA0319Q5VV43 1072 aa7.19□□□□□ -1.26
CLK1-208ENST00000464454 PEAR1Q5VY43 1037 aaPredicted RBP7.19□□□□□ -1.26
CLK1-208ENST00000464454 ALG1LQ6GMV1 187 aa7.19□□□□□ -1.26
CLK1-208ENST00000464454 MAP4K3Q8IVH8 894 aa7.19□□□□□ -1.26
CLK1-208ENST00000464454 IL22RA1Q8N6P7 574 aa7.19□□□□□ -1.26
CLK1-208ENST00000464454 BHLHE41Q9C0J9 482 aaPredicted RBP7.19□□□□□ -1.26
CLK1-208ENST00000464454 NPHS2Q9NP85 383 aa7.19□□□□□ -1.26
CLK1-208ENST00000464454 NLRP2Q9NX02 1062 aa7.19□□□□□ -1.26
CLK1-208ENST00000464454 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.19□□□□□ -1.26
CLK1-208ENST00000464454 A0A1W2PP55 124 aa7.18□□□□□ -1.26
CLK1-208ENST00000464454 MFAP1P55081 439 aaKnown RBP7.18□□□□□ -1.26
CLK1-208ENST00000464454 CABP4P57796 275 aa7.18□□□□□ -1.26
CLK1-208ENST00000464454 GPAT2Q6NUI2 795 aa7.18□□□□□ -1.26
CLK1-208ENST00000464454 DNAJC14Q6Y2X3 702 aaPredicted RBP7.18□□□□□ -1.26
CLK1-208ENST00000464454 DMRTC2Q8IXT2 367 aaPredicted RBP7.18□□□□□ -1.26
CLK1-208ENST00000464454 NXPE3Q969Y0 559 aa7.18□□□□□ -1.26
CLK1-208ENST00000464454 POP1Q99575 1024 aaKnown RBP7.18□□□□□ -1.26
CLK1-208ENST00000464454 LACRTQ9GZZ8 138 aa7.18□□□□□ -1.26
CLK1-208ENST00000464454 ADAM19Q9H013 955 aa7.18□□□□□ -1.26
CLK1-208ENST00000464454 EHD4Q9H223 541 aa7.18□□□□□ -1.26
CLK1-208ENST00000464454 SUV39H2Q9H5I1 410 aa7.18□□□□□ -1.26
CLK1-208ENST00000464454 LATS2Q9NRM7 1088 aa7.18□□□□□ -1.26
CLK1-208ENST00000464454 TRAK1Q9UPV9 953 aa7.18□□□□□ -1.26
CLK1-208ENST00000464454 PPME1Q9Y570 386 aa7.18□□□□□ -1.26
CLK1-208ENST00000464454 A0A0A0MRY4 1105 aa7.17□□□□□ -1.26
CLK1-208ENST00000464454 GADD45BO75293 160 aaPredicted RBP7.17□□□□□ -1.26
CLK1-208ENST00000464454 P4HBP07237 508 aaKnown RBP7.17□□□□□ -1.26
CLK1-208ENST00000464454 FAM117BQ6P1L5 589 aa7.17□□□□□ -1.26
CLK1-208ENST00000464454 BSNDQ8WZ55 320 aa7.17□□□□□ -1.26
CLK1-208ENST00000464454 LIN7BQ9HAP6 207 aa7.17□□□□□ -1.26
CLK1-208ENST00000464454 ELNP15502 786 aa7.16□□□□□ -1.26
CLK1-208ENST00000464454 BAG6P46379 1132 aa7.16□□□□□ -1.26
CLK1-208ENST00000464454 EAPPQ56P03 285 aaPredicted RBP7.16□□□□□ -1.26
CLK1-208ENST00000464454 ILDR2Q71H61 639 aa7.16□□□□□ -1.26
CLK1-208ENST00000464454 CCNJLQ8IV13 435 aa7.16□□□□□ -1.26
CLK1-208ENST00000464454 FMR1NBQ8N0W7 255 aaPredicted RBP7.16□□□□□ -1.26
CLK1-208ENST00000464454 HHIPQ96QV1 700 aa7.16□□□□□ -1.26
CLK1-208ENST00000464454 NACC1Q96RE7 527 aa7.16□□□□□ -1.26
CLK1-208ENST00000464454 PPP4R2Q9NY27 417 aa7.16□□□□□ -1.26
CLK1-208ENST00000464454 H3BRJ5 948 aa7.15□□□□□ -1.26
CLK1-208ENST00000464454 TRPA1O75762 1119 aa7.15□□□□□ -1.26
CLK1-208ENST00000464454 LDHBP07195 334 aaKnown RBP7.15□□□□□ -1.26
CLK1-208ENST00000464454 COL8A1P27658 744 aa7.15□□□□□ -1.26
CLK1-208ENST00000464454 PRPF40BQ6NWY9 871 aaKnown RBP7.15□□□□□ -1.26
CLK1-208ENST00000464454 FBXO11Q86XK2 927 aa7.15□□□□□ -1.26
CLK1-208ENST00000464454 NPAS4Q8IUM7 802 aa7.15□□□□□ -1.26
CLK1-208ENST00000464454 ASAP3Q8TDY4 903 aa7.15□□□□□ -1.26
CLK1-208ENST00000464454 WNT8BQ93098 351 aa7.15□□□□□ -1.26
CLK1-208ENST00000464454 SOX13Q9UN79 622 aa7.15□□□□□ -1.26
CLK1-208ENST00000464454 GIPC1O14908 333 aa7.14□□□□□ -1.27
CLK1-208ENST00000464454 EIF4EBP3O60516 100 aaPredicted RBP7.14□□□□□ -1.27
CLK1-208ENST00000464454 APBA3O96018 575 aa7.14□□□□□ -1.27
CLK1-208ENST00000464454 EPS8L3Q8TE67 593 aaKnown RBP7.14□□□□□ -1.27
CLK1-208ENST00000464454 DCAF5Q96JK2 942 aa7.14□□□□□ -1.27
CLK1-208ENST00000464454 FRMD6Q96NE9 622 aa7.14□□□□□ -1.27
CLK1-208ENST00000464454 TCF12Q99081 682 aa7.14□□□□□ -1.27
CLK1-208ENST00000464454 SRCIN1Q9C0H9 1055 aa7.14□□□□□ -1.27
CLK1-208ENST00000464454 ZFYVE1Q9HBF4 777 aa7.14□□□□□ -1.27
CLK1-208ENST00000464454 SPG7Q9UQ90 795 aa7.14□□□□□ -1.27
CLK1-208ENST00000464454 PRPF40AO75400 957 aaKnown RBP7.13□□□□□ -1.27
CLK1-208ENST00000464454 EPHA1P21709 976 aa7.13□□□□□ -1.27
CLK1-208ENST00000464454 ARL4DP49703 201 aa7.13□□□□□ -1.27
CLK1-208ENST00000464454 PIP4K2BP78356 416 aa7.13□□□□□ -1.27
CLK1-208ENST00000464454 PTPN12Q05209 780 aaKnown RBP7.13□□□□□ -1.27
CLK1-208ENST00000464454 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.13□□□□□ -1.27
CLK1-208ENST00000464454 SH2B1Q9NRF2 756 aaPredicted RBP7.13□□□□□ -1.27
CLK1-208ENST00000464454 A0A096LPE4 126 aa7.12□□□□□ -1.27
CLK1-208ENST00000464454 A0A1W2PPZ6 126 aa7.12□□□□□ -1.27
CLK1-208ENST00000464454 FAM229AH3BQW9 127 aa7.12□□□□□ -1.27
CLK1-208ENST00000464454 LINC01387J3KSC0 135 aa7.12□□□□□ -1.27
CLK1-208ENST00000464454 XRCC5P13010 732 aaKnown RBP7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms