RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 GBP4Q96PP9 640 aa12.01□□□□□ -0.49
PTPRD-207ENST00000463477 BSDC1Q9NW68 430 aaPredicted RBP12.01□□□□□ -0.49
PTPRD-207ENST00000463477 FZD9O00144 591 aa12□□□□□ -0.49
PTPRD-207ENST00000463477 NBPF7P0C2Y1 421 aaPredicted RBP12□□□□□ -0.49
PTPRD-207ENST00000463477 L1TD1Q5T7N2 865 aaKnown RBP12□□□□□ -0.49
PTPRD-207ENST00000463477 JDP2Q8WYK2 163 aa12□□□□□ -0.49
PTPRD-207ENST00000463477 PODXL2Q9NZ53 605 aa12□□□□□ -0.49
PTPRD-207ENST00000463477 NSFL1CQ9UNZ2 370 aaKnown RBP12□□□□□ -0.49
PTPRD-207ENST00000463477 CCDC88AQ3V6T2 1871 aa12□□□□□ -0.49
PTPRD-207ENST00000463477 APBB1O00213 710 aa12□□□□□ -0.49
PTPRD-207ENST00000463477 ST18O60284 1047 aa12□□□□□ -0.49
PTPRD-207ENST00000463477 ITGA6P23229 1130 aa12□□□□□ -0.49
PTPRD-207ENST00000463477 ANAPC15P60006 121 aa12□□□□□ -0.49
PTPRD-207ENST00000463477 LARGE2Q8N3Y3 721 aa12□□□□□ -0.49
PTPRD-207ENST00000463477 KIF1BPQ96EK5 621 aa12□□□□□ -0.49
PTPRD-207ENST00000463477 ESYT1Q9BSJ8 1104 aa12□□□□□ -0.49
PTPRD-207ENST00000463477 ISY1Q9ULR0 285 aaKnown RBP12□□□□□ -0.49
PTPRD-207ENST00000463477 TAF1P21675 1872 aa11.99□□□□□ -0.49
PTPRD-207ENST00000463477 KIF3CO14782 793 aa11.99□□□□□ -0.49
PTPRD-207ENST00000463477 HSP90AA1P07900 732 aaKnown RBP11.99□□□□□ -0.49
PTPRD-207ENST00000463477 KIAA2012Q0VF49 1180 aa11.99□□□□□ -0.49
PTPRD-207ENST00000463477 EPHA10Q5JZY3 1008 aa11.99□□□□□ -0.49
PTPRD-207ENST00000463477 LMBR1LQ6UX01 489 aa11.99□□□□□ -0.49
PTPRD-207ENST00000463477 TNPO1Q92973 898 aaKnown RBP11.99□□□□□ -0.49
PTPRD-207ENST00000463477 KAZALD1Q96I82 304 aa11.99□□□□□ -0.49
PTPRD-207ENST00000463477 CWC22Q9HCG8 908 aaKnown RBP11.99□□□□□ -0.49
PTPRD-207ENST00000463477 DICER1Q9UPY3 1922 aaKnown RBP11.98□□□□□ -0.49
PTPRD-207ENST00000463477 PPIP5K2O43314 1243 aa11.98□□□□□ -0.49
PTPRD-207ENST00000463477 IGHMBP2P38935 993 aaKnown RBP11.98□□□□□ -0.49
PTPRD-207ENST00000463477 MCM2P49736 904 aa11.98□□□□□ -0.49
PTPRD-207ENST00000463477 GPSM2P81274 684 aa11.98□□□□□ -0.49
PTPRD-207ENST00000463477 IFIT5Q13325 482 aaKnown RBP11.98□□□□□ -0.49
PTPRD-207ENST00000463477 SKOR2Q2VWA4 1001 aaPredicted RBP11.98□□□□□ -0.49
PTPRD-207ENST00000463477 SUCLG2Q96I99 432 aa11.98□□□□□ -0.49
PTPRD-207ENST00000463477 NMRK2Q9NPI5 230 aa11.98□□□□□ -0.49
PTPRD-207ENST00000463477 POLLQ9UGP5 575 aa11.98□□□□□ -0.49
PTPRD-207ENST00000463477 MINPP1Q9UNW1 487 aa11.98□□□□□ -0.49
PTPRD-207ENST00000463477 ANKRD18BA2A2Z9 1011 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 TRAK2O60296 914 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 VEGFAP15692 232 aaPredicted RBP11.97□□□□□ -0.49
PTPRD-207ENST00000463477 MCCP23508 829 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 CHMLP26374 656 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 AOC3Q16853 763 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 WASHC4Q2M389 1173 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 TBC1D16Q8TBP0 767 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 RRAGCQ9HB90 399 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 ANKIB1Q9P2G1 1089 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 FSD2A1L4K1 749 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 POTECB2RU33 542 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 DDNO94850 711 aaPredicted RBP11.97□□□□□ -0.49
PTPRD-207ENST00000463477 NUCB2P80303 420 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 CCDC57Q2TAC2 916 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 RABL6Q3YEC7 729 aaPredicted RBP11.97□□□□□ -0.49
PTPRD-207ENST00000463477 RHPN1Q8TCX5 695 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 EYA3Q99504 573 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 MPHOSPH8Q99549 860 aa11.97□□□□□ -0.49
PTPRD-207ENST00000463477 COL4A1P02462 1669 aa11.96□□□□□ -0.49
PTPRD-207ENST00000463477 XDHP47989 1333 aa11.96□□□□□ -0.49
PTPRD-207ENST00000463477 TTC41PQ6P2S7 1318 aa11.96□□□□□ -0.49
PTPRD-207ENST00000463477 MYH3P11055 1940 aa11.96□□□□□ -0.5
PTPRD-207ENST00000463477 C6orf229H3BNL8 230 aa11.96□□□□□ -0.5
PTPRD-207ENST00000463477 SRGAP3O43295 1099 aa11.96□□□□□ -0.5
PTPRD-207ENST00000463477 SURF6O75683 361 aaKnown RBP11.96□□□□□ -0.5
PTPRD-207ENST00000463477 ATP2B4P23634 1241 aa11.96□□□□□ -0.5
PTPRD-207ENST00000463477 EIF6P56537 245 aaKnown RBP11.96□□□□□ -0.5
PTPRD-207ENST00000463477 NIM1KQ8IY84 436 aa11.96□□□□□ -0.5
PTPRD-207ENST00000463477 GPC2Q8N158 579 aa11.96□□□□□ -0.5
PTPRD-207ENST00000463477 L3MBTL3Q96JM7 780 aaPredicted RBP11.96□□□□□ -0.5
PTPRD-207ENST00000463477 BICC1Q9H694 974 aaKnown RBP11.96□□□□□ -0.5
PTPRD-207ENST00000463477 GGA1Q9UJY5 639 aa11.96□□□□□ -0.5
PTPRD-207ENST00000463477 ZNRF3Q9ULT6 936 aa11.96□□□□□ -0.5
PTPRD-207ENST00000463477 TOMM70O94826 608 aa11.95□□□□□ -0.5
PTPRD-207ENST00000463477 CYP2E1P05181 493 aaPredicted RBP11.95□□□□□ -0.5
PTPRD-207ENST00000463477 C1QTNF8P60827 252 aa11.95□□□□□ -0.5
PTPRD-207ENST00000463477 ERC1Q8IUD2 1116 aa11.95□□□□□ -0.5
PTPRD-207ENST00000463477 PI4K2BQ8TCG2 481 aa11.95□□□□□ -0.5
PTPRD-207ENST00000463477 ZC3H12CQ9C0D7 883 aaKnown RBP11.95□□□□□ -0.5
PTPRD-207ENST00000463477 CHMP3Q9Y3E7 222 aa11.95□□□□□ -0.5
PTPRD-207ENST00000463477 LRRC37AA6NMS7 1700 aa11.95□□□□□ -0.5
PTPRD-207ENST00000463477 ANKRD2Q9GZV1 360 aa11.94□□□□□ -0.5
PTPRD-207ENST00000463477 LEMD3Q9Y2U8 911 aa11.94□□□□□ -0.5
PTPRD-207ENST00000463477 ZNF541Q9H0D2 1346 aa11.94□□□□□ -0.5
PTPRD-207ENST00000463477 COL4A5P29400 1685 aa11.94□□□□□ -0.5
PTPRD-207ENST00000463477 UFL1O94874 794 aa11.94□□□□□ -0.5
PTPRD-207ENST00000463477 CXCL9Q07325 125 aa11.94□□□□□ -0.5
PTPRD-207ENST00000463477 LDHAL6AQ6ZMR3 332 aa11.94□□□□□ -0.5
PTPRD-207ENST00000463477 DUOX1Q9NRD9 1551 aa11.93□□□□□ -0.5
PTPRD-207ENST00000463477 IQCA1LA6NCM1 817 aa11.93□□□□□ -0.5
PTPRD-207ENST00000463477 TRIM6-TRIM34B2RNG4 842 aa11.93□□□□□ -0.5
PTPRD-207ENST00000463477 GOLGA6L22H0YM25 854 aa11.93□□□□□ -0.5
PTPRD-207ENST00000463477 RIMBP2O15034 1052 aa11.93□□□□□ -0.5
PTPRD-207ENST00000463477 CHRNDQ07001 517 aa11.93□□□□□ -0.5
PTPRD-207ENST00000463477 TIAM2Q8IVF5 1701 aa11.92□□□□□ -0.5
PTPRD-207ENST00000463477 YDJCA8MPS7 323 aa11.92□□□□□ -0.5
PTPRD-207ENST00000463477 GLRX3O76003 335 aaKnown RBP11.92□□□□□ -0.5
PTPRD-207ENST00000463477 CUL4AQ13619 759 aa11.92□□□□□ -0.5
PTPRD-207ENST00000463477 TNIP1Q15025 636 aa11.92□□□□□ -0.5
PTPRD-207ENST00000463477 TAF7LQ5H9L4 462 aa11.92□□□□□ -0.5
PTPRD-207ENST00000463477 CNTROBQ8N137 903 aa11.92□□□□□ -0.5
PTPRD-207ENST00000463477 RBM46Q8TBY0 533 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms