RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 GRM2Q14416 872 aa7□□□□□ -1.29
VPS41-210ENST00000462429 CEP135Q66GS9 1140 aa7□□□□□ -1.29
VPS41-210ENST00000462429 C1orf229Q6ZS94 237 aaPredicted RBP7□□□□□ -1.29
VPS41-210ENST00000462429 LPIN3Q9BQK8 851 aa7□□□□□ -1.29
VPS41-210ENST00000462429 BCO2Q9BYV7 579 aa7□□□□□ -1.29
VPS41-210ENST00000462429 SMG9Q9H0W8 520 aaKnown RBP7□□□□□ -1.29
VPS41-210ENST00000462429 C12orf49Q9H741 205 aa7□□□□□ -1.29
VPS41-210ENST00000462429 UNCXA6NJT0 531 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 E9PSI1 815 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 PDE2AO00408 941 aaPredicted RBP6.99□□□□□ -1.29
VPS41-210ENST00000462429 AMPD1P23109 780 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 VAMP1P23763 118 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 LCE2AQ5TA79 106 aaPredicted RBP6.99□□□□□ -1.29
VPS41-210ENST00000462429 NXPE4Q6UWF7 544 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 LYPD4Q6UWN0 246 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 CHSY3Q70JA7 882 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 CCNJLQ8IV13 435 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 CACTIN-AS1Q8N1I8 211 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 TTC9Q92623 222 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 BTBD6Q96KE9 485 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 FAM161BQ96MY7 647 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 BHLHE41Q9C0J9 482 aaPredicted RBP6.99□□□□□ -1.29
VPS41-210ENST00000462429 ENAMQ9NRM1 1142 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 RNF19AQ9NV58 838 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 FAM8A1Q9UBU6 413 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 VTI1BQ9UEU0 232 aa6.99□□□□□ -1.29
VPS41-210ENST00000462429 FAM177BA6PVY3 158 aa6.98□□□□□ -1.29
VPS41-210ENST00000462429 NFKBIEO00221 500 aa6.98□□□□□ -1.29
VPS41-210ENST00000462429 TRPA1O75762 1119 aa6.98□□□□□ -1.29
VPS41-210ENST00000462429 PTPRAP18433 802 aa6.98□□□□□ -1.29
VPS41-210ENST00000462429 PRPF40BQ6NWY9 871 aaKnown RBP6.98□□□□□ -1.29
VPS41-210ENST00000462429 SVOPQ8N4V2 548 aa6.98□□□□□ -1.29
VPS41-210ENST00000462429 NUDT8Q8WV74 236 aa6.98□□□□□ -1.29
VPS41-210ENST00000462429 NXPE3Q969Y0 559 aa6.98□□□□□ -1.29
VPS41-210ENST00000462429 OSBPL7Q9BZF2 842 aa6.98□□□□□ -1.29
VPS41-210ENST00000462429 JPH1Q9HDC5 661 aaPredicted RBP6.98□□□□□ -1.29
VPS41-210ENST00000462429 SHISA8B8ZZ34 492 aa6.97□□□□□ -1.29
VPS41-210ENST00000462429 WIPF1O43516 503 aa6.97□□□□□ -1.29
VPS41-210ENST00000462429 LILRB5O75023 590 aa6.97□□□□□ -1.29
VPS41-210ENST00000462429 XRCC5P13010 732 aaKnown RBP6.97□□□□□ -1.29
VPS41-210ENST00000462429 GSTT1P30711 240 aa6.97□□□□□ -1.29
VPS41-210ENST00000462429 MRPL58Q14197 206 aaKnown RBP6.97□□□□□ -1.29
VPS41-210ENST00000462429 ASAP3Q8TDY4 903 aa6.97□□□□□ -1.29
VPS41-210ENST00000462429 HHIPQ96QV1 700 aa6.97□□□□□ -1.29
VPS41-210ENST00000462429 TCF12Q99081 682 aa6.97□□□□□ -1.29
VPS41-210ENST00000462429 POP1Q99575 1024 aaKnown RBP6.97□□□□□ -1.29
VPS41-210ENST00000462429 ZFYVE1Q9HBF4 777 aa6.97□□□□□ -1.29
VPS41-210ENST00000462429 STARD13Q9Y3M8 1113 aa6.97□□□□□ -1.29
VPS41-210ENST00000462429 TMEM238LA0A1B0GVL6 79 aa6.96□□□□□ -1.3
VPS41-210ENST00000462429 M0R082 166 aa6.96□□□□□ -1.3
VPS41-210ENST00000462429 ALBP02768 609 aa6.96□□□□□ -1.3
VPS41-210ENST00000462429 USP17L7P0C7H9 530 aa6.96□□□□□ -1.3
VPS41-210ENST00000462429 ZNF385CQ66K41 422 aaPredicted RBP6.96□□□□□ -1.3
VPS41-210ENST00000462429 DTHD1Q6ZMT9 781 aa6.96□□□□□ -1.3
VPS41-210ENST00000462429 C20orf204Q6ZNR8 217 aa6.96□□□□□ -1.3
VPS41-210ENST00000462429 GLIS3Q8NEA6 775 aa6.96□□□□□ -1.3
VPS41-210ENST00000462429 NEDD1Q8NHV4 660 aa6.96□□□□□ -1.3
VPS41-210ENST00000462429 ZNF417Q8TAU3 575 aa6.96□□□□□ -1.3
VPS41-210ENST00000462429 WHAMMQ8TF30 809 aa6.96□□□□□ -1.3
VPS41-210ENST00000462429 ZNF587Q96SQ5 575 aaPredicted RBP6.96□□□□□ -1.3
VPS41-210ENST00000462429 ABCB6Q9NP58 842 aa6.96□□□□□ -1.3
VPS41-210ENST00000462429 KIAA1522Q9P206 1035 aaPredicted RBP6.96□□□□□ -1.3
VPS41-210ENST00000462429 FCGRTP55899 365 aa6.95□□□□□ -1.3
VPS41-210ENST00000462429 PTPN12Q05209 780 aaKnown RBP6.95□□□□□ -1.3
VPS41-210ENST00000462429 GDF6Q6KF10 455 aaPredicted RBP6.95□□□□□ -1.3
VPS41-210ENST00000462429 BSNDQ8WZ55 320 aa6.95□□□□□ -1.3
VPS41-210ENST00000462429 CRELD1Q96HD1 420 aa6.95□□□□□ -1.3
VPS41-210ENST00000462429 PRDM6Q9NQX0 595 aa6.95□□□□□ -1.3
VPS41-210ENST00000462429 TRIM33Q9UPN9 1127 aa6.95□□□□□ -1.3
VPS41-210ENST00000462429 A0A096LPE4 126 aa6.94□□□□□ -1.3
VPS41-210ENST00000462429 A0A1W2PPZ6 126 aa6.94□□□□□ -1.3
VPS41-210ENST00000462429 ITPKAP23677 461 aa6.94□□□□□ -1.3
VPS41-210ENST00000462429 CDC27P30260 824 aa6.94□□□□□ -1.3
VPS41-210ENST00000462429 GRIA4P48058 902 aa6.94□□□□□ -1.3
VPS41-210ENST00000462429 CABP4P57796 275 aa6.94□□□□□ -1.3
VPS41-210ENST00000462429 LACRTQ9GZZ8 138 aa6.94□□□□□ -1.3
VPS41-210ENST00000462429 ADAM19Q9H013 955 aa6.94□□□□□ -1.3
VPS41-210ENST00000462429 RRAGCQ9HB90 399 aa6.94□□□□□ -1.3
VPS41-210ENST00000462429 METTL12A8MUP2 240 aa6.93□□□□□ -1.3
VPS41-210ENST00000462429 AFF1P51825 1210 aaKnown RBP6.93□□□□□ -1.3
VPS41-210ENST00000462429 SPRED3Q2MJR0 410 aa6.93□□□□□ -1.3
VPS41-210ENST00000462429 TSNAXIP1Q2TAA8 658 aa6.93□□□□□ -1.3
VPS41-210ENST00000462429 MUC3BQ9H195 1237 aa6.93□□□□□ -1.3
VPS41-210ENST00000462429 PPM1HQ9ULR3 514 aa6.93□□□□□ -1.3
VPS41-210ENST00000462429 AKAP2Q9Y2D5 859 aa6.93□□□□□ -1.3
VPS41-210ENST00000462429 RECKO95980 971 aa6.92□□□□□ -1.3
VPS41-210ENST00000462429 RANGAP1P46060 587 aaPredicted RBP6.92□□□□□ -1.3
VPS41-210ENST00000462429 GRIK5Q16478 980 aa6.92□□□□□ -1.3
VPS41-210ENST00000462429 RPS26P11Q5JNZ5 115 aaPredicted RBP6.92□□□□□ -1.3
VPS41-210ENST00000462429 WFDC8Q8IUA0 241 aa6.92□□□□□ -1.3
VPS41-210ENST00000462429 IL22RA1Q8N6P7 574 aa6.92□□□□□ -1.3
VPS41-210ENST00000462429 C3orf58Q8NDZ4 430 aa6.92□□□□□ -1.3
VPS41-210ENST00000462429 BACH2Q9BYV9 841 aa6.92□□□□□ -1.3
VPS41-210ENST00000462429 SOX13Q9UN79 622 aa6.92□□□□□ -1.3
VPS41-210ENST00000462429 PIK3R2O00459 728 aa6.91□□□□□ -1.3
VPS41-210ENST00000462429 ARHGEF15O94989 841 aa6.91□□□□□ -1.3
VPS41-210ENST00000462429 CTSHP09668 335 aa6.91□□□□□ -1.3
VPS41-210ENST00000462429 DGKGP49619 791 aa6.91□□□□□ -1.3
VPS41-210ENST00000462429 INSM1Q01101 510 aaPredicted RBP6.91□□□□□ -1.3
VPS41-210ENST00000462429 TAF1CQ15572 869 aaPredicted RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms