RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 XDHP47989 1333 aa23.38■■□□□ 1.33
HOXD3-204ENST00000459979 ADM5C9JUS6 153 aa23.38■■□□□ 1.33
HOXD3-204ENST00000459979 FAM161AQ3B820 660 aa23.38■■□□□ 1.33
HOXD3-204ENST00000459979 HHIPL1Q96JK4 782 aa23.38■■□□□ 1.33
HOXD3-204ENST00000459979 ANKIB1Q9P2G1 1089 aa23.38■■□□□ 1.33
HOXD3-204ENST00000459979 MINPP1Q9UNW1 487 aa23.38■■□□□ 1.33
HOXD3-204ENST00000459979 PSME4Q14997 1843 aa23.38■■□□□ 1.33
HOXD3-204ENST00000459979 UFL1O94874 794 aa23.37■■□□□ 1.33
HOXD3-204ENST00000459979 IGHMBP2P38935 993 aaKnown RBP23.37■■□□□ 1.33
HOXD3-204ENST00000459979 HUNKP57058 714 aa23.37■■□□□ 1.33
HOXD3-204ENST00000459979 KRT26Q7Z3Y9 468 aa23.37■■□□□ 1.33
HOXD3-204ENST00000459979 GGA1Q9UJY5 639 aa23.37■■□□□ 1.33
HOXD3-204ENST00000459979 EPHA10Q5JZY3 1008 aa23.36■■□□□ 1.33
HOXD3-204ENST00000459979 ZC3H12CQ9C0D7 883 aaKnown RBP23.36■■□□□ 1.33
HOXD3-204ENST00000459979 ASTN2O75129 1339 aaPredicted RBP23.35■■□□□ 1.33
HOXD3-204ENST00000459979 ZBED9Q6R2W3 1325 aa23.35■■□□□ 1.33
HOXD3-204ENST00000459979 ANKRD18BA2A2Z9 1011 aa23.35■■□□□ 1.33
HOXD3-204ENST00000459979 CCDC85CA6NKD9 419 aa23.35■■□□□ 1.33
HOXD3-204ENST00000459979 NBPF7P0C2Y1 421 aaPredicted RBP23.35■■□□□ 1.33
HOXD3-204ENST00000459979 ATP2B4P23634 1241 aa23.35■■□□□ 1.33
HOXD3-204ENST00000459979 RPS12P25398 132 aaKnown RBP23.35■■□□□ 1.33
HOXD3-204ENST00000459979 ARHGAP45Q92619 1136 aa23.35■■□□□ 1.33
HOXD3-204ENST00000459979 KAZALD1Q96I82 304 aa23.35■■□□□ 1.33
HOXD3-204ENST00000459979 NOB1Q9ULX3 412 aaKnown RBP23.35■■□□□ 1.33
HOXD3-204ENST00000459979 IFIT5Q13325 482 aaKnown RBP23.34■■□□□ 1.33
HOXD3-204ENST00000459979 KIF4BQ2VIQ3 1234 aa23.34■■□□□ 1.33
HOXD3-204ENST00000459979 LMBR1LQ6UX01 489 aa23.34■■□□□ 1.33
HOXD3-204ENST00000459979 API5Q9BZZ5 524 aaKnown RBP23.34■■□□□ 1.33
HOXD3-204ENST00000459979 G3V3G9 751 aa23.33■■□□□ 1.33
HOXD3-204ENST00000459979 DCAF8Q5TAQ9 597 aa23.33■■□□□ 1.33
HOXD3-204ENST00000459979 DCPSQ96C86 337 aaKnown RBP23.33■■□□□ 1.33
HOXD3-204ENST00000459979 MPHOSPH8Q99549 860 aa23.33■■□□□ 1.33
HOXD3-204ENST00000459979 USP44Q9H0E7 712 aa23.33■■□□□ 1.33
HOXD3-204ENST00000459979 GBA2Q9HCG7 927 aaPredicted RBP23.33■■□□□ 1.33
HOXD3-204ENST00000459979 KIF16BQ96L93 1317 aa23.33■■□□□ 1.32
HOXD3-204ENST00000459979 VIL1P09327 827 aaKnown RBP23.32■■□□□ 1.32
HOXD3-204ENST00000459979 CCT4P50991 539 aaKnown RBP23.32■■□□□ 1.32
HOXD3-204ENST00000459979 SUCLG2Q96I99 432 aa23.32■■□□□ 1.32
HOXD3-204ENST00000459979 ANKRD2Q9GZV1 360 aa23.32■■□□□ 1.32
HOXD3-204ENST00000459979 GGA3Q9NZ52 723 aa23.32■■□□□ 1.32
HOXD3-204ENST00000459979 CA12O43570 354 aa23.31■■□□□ 1.32
HOXD3-204ENST00000459979 NOGQ13253 232 aa23.31■■□□□ 1.32
HOXD3-204ENST00000459979 CCDC57Q2TAC2 916 aa23.31■■□□□ 1.32
HOXD3-204ENST00000459979 RABL6Q3YEC7 729 aaPredicted RBP23.31■■□□□ 1.32
HOXD3-204ENST00000459979 LEMD3Q9Y2U8 911 aa23.31■■□□□ 1.32
HOXD3-204ENST00000459979 AKAP11Q9UKA4 1901 aa23.3■■□□□ 1.32
HOXD3-204ENST00000459979 RGMBQ6NW40 437 aa23.3■■□□□ 1.32
HOXD3-204ENST00000459979 MED23Q9ULK4 1368 aa23.29■■□□□ 1.32
HOXD3-204ENST00000459979 WTIPA6NIX2 430 aaPredicted RBP23.29■■□□□ 1.32
HOXD3-204ENST00000459979 FAM155AB1AL88 458 aaPredicted RBP23.29■■□□□ 1.32
HOXD3-204ENST00000459979 C2orf69Q8N8R5 385 aa23.29■■□□□ 1.32
HOXD3-204ENST00000459979 MCOLN1Q9GZU1 580 aa23.29■■□□□ 1.32
HOXD3-204ENST00000459979 CHMP3Q9Y3E7 222 aa23.29■■□□□ 1.32
HOXD3-204ENST00000459979 ZNF646O15015 1829 aaPredicted RBP23.28■■□□□ 1.32
HOXD3-204ENST00000459979 IPO8O15397 1037 aaKnown RBP23.27■■□□□ 1.32
HOXD3-204ENST00000459979 CHRNDQ07001 517 aa23.27■■□□□ 1.32
HOXD3-204ENST00000459979 RSBN1LQ6PCB5 846 aaPredicted RBP23.27■■□□□ 1.32
HOXD3-204ENST00000459979 SULF1Q8IWU6 871 aa23.27■■□□□ 1.32
HOXD3-204ENST00000459979 BICC1Q9H694 974 aaKnown RBP23.27■■□□□ 1.32
HOXD3-204ENST00000459979 ZNF157P51786 506 aaPredicted RBP23.26■■□□□ 1.31
HOXD3-204ENST00000459979 ANGEL2Q5VTE6 544 aaKnown RBP23.26■■□□□ 1.31
HOXD3-204ENST00000459979 PODNQ7Z5L7 613 aa23.26■■□□□ 1.31
HOXD3-204ENST00000459979 ANKRD44Q8N8A2 993 aa23.26■■□□□ 1.31
HOXD3-204ENST00000459979 CDCA5Q96FF9 252 aa23.26■■□□□ 1.31
HOXD3-204ENST00000459979 SCAF8Q9UPN6 1271 aaKnown RBP23.26■■□□□ 1.31
HOXD3-204ENST00000459979 ZNF804BA4D1E1 1349 aa23.26■■□□□ 1.31
HOXD3-204ENST00000459979 KIF23Q02241 960 aaPredicted RBP23.25■■□□□ 1.31
HOXD3-204ENST00000459979 DGKZQ13574 1117 aa23.25■■□□□ 1.31
HOXD3-204ENST00000459979 SCARF1Q14162 830 aa23.25■■□□□ 1.31
HOXD3-204ENST00000459979 INTS3Q68E01 1043 aaKnown RBP23.25■■□□□ 1.31
HOXD3-204ENST00000459979 LDHAL6AQ6ZMR3 332 aa23.25■■□□□ 1.31
HOXD3-204ENST00000459979 ZNF609O15014 1411 aa23.25■■□□□ 1.31
HOXD3-204ENST00000459979 A0A1B0GUL6 1792 aa23.24■■□□□ 1.31
HOXD3-204ENST00000459979 BCAR3O75815 825 aa23.24■■□□□ 1.31
HOXD3-204ENST00000459979 ZNF280AP59817 542 aaPredicted RBP23.24■■□□□ 1.31
HOXD3-204ENST00000459979 AGBL3Q8NEM8 1001 aa23.24■■□□□ 1.31
HOXD3-204ENST00000459979 ZNF594Q96JF6 807 aaPredicted RBP23.24■■□□□ 1.31
HOXD3-204ENST00000459979 TAF7LQ5H9L4 462 aa23.23■■□□□ 1.31
HOXD3-204ENST00000459979 C15orf52Q6ZUT6 534 aaKnown RBP23.23■■□□□ 1.31
HOXD3-204ENST00000459979 GMLQ99445 158 aa23.23■■□□□ 1.31
HOXD3-204ENST00000459979 ATF7IPQ6VMQ6 1270 aa23.22■■□□□ 1.31
HOXD3-204ENST00000459979 CCDC102AQ96A19 550 aa23.22■■□□□ 1.31
HOXD3-204ENST00000459979 MXD3Q9BW11 206 aa23.22■■□□□ 1.31
HOXD3-204ENST00000459979 COA1Q9GZY4 146 aa23.22■■□□□ 1.31
HOXD3-204ENST00000459979 MYOZ2Q9NPC6 264 aa23.22■■□□□ 1.31
HOXD3-204ENST00000459979 HDAC5Q9UQL6 1122 aa23.22■■□□□ 1.31
HOXD3-204ENST00000459979 IRS2Q9Y4H2 1338 aa23.22■■□□□ 1.31
HOXD3-204ENST00000459979 USP17L3A6NCW0 530 aa23.21■■□□□ 1.31
HOXD3-204ENST00000459979 USP17L4A6NCW7 530 aa23.21■■□□□ 1.31
HOXD3-204ENST00000459979 SLC10A3P09131 477 aa23.21■■□□□ 1.31
HOXD3-204ENST00000459979 USP17L8P0C7I0 530 aa23.21■■□□□ 1.31
HOXD3-204ENST00000459979 TRIM27P14373 513 aa23.21■■□□□ 1.31
HOXD3-204ENST00000459979 USP17L1Q7RTZ2 530 aa23.21■■□□□ 1.31
HOXD3-204ENST00000459979 TXNRD3Q86VQ6 643 aa23.21■■□□□ 1.31
HOXD3-204ENST00000459979 CNNM1Q9NRU3 951 aa23.21■■□□□ 1.31
HOXD3-204ENST00000459979 PAPPA2Q9BXP8 1791 aa23.21■■□□□ 1.31
HOXD3-204ENST00000459979 TRPA1O75762 1119 aa23.2■■□□□ 1.3
HOXD3-204ENST00000459979 UBTFL1P0CB47 393 aaPredicted RBP23.2■■□□□ 1.3
HOXD3-204ENST00000459979 FBXW7Q969H0 707 aa23.2■■□□□ 1.3
HOXD3-204ENST00000459979 RIPOR2Q9Y4F9 1068 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms