RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 GLIPR1L2Q4G1C9 344 aa7.45□□□□□ -1.22
VPS41-209ENST00000457055 FAM26DQ5JW98 314 aa7.45□□□□□ -1.22
VPS41-209ENST00000457055 PRR23CQ6ZRP0 262 aa7.45□□□□□ -1.22
VPS41-209ENST00000457055 MAP4K3Q8IVH8 894 aa7.45□□□□□ -1.22
VPS41-209ENST00000457055 DCAF11Q8TEB1 546 aa7.45□□□□□ -1.22
VPS41-209ENST00000457055 PIK3R5Q8WYR1 880 aa7.45□□□□□ -1.22
VPS41-209ENST00000457055 PLCD4Q9BRC7 762 aa7.45□□□□□ -1.22
VPS41-209ENST00000457055 FAM13BQ9NYF5 915 aa7.45□□□□□ -1.22
VPS41-209ENST00000457055 CXXC1Q9P0U4 656 aaPredicted RBP7.45□□□□□ -1.22
VPS41-209ENST00000457055 ARHGEF11O15085 1522 aa7.44□□□□□ -1.22
VPS41-209ENST00000457055 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.44□□□□□ -1.22
VPS41-209ENST00000457055 F8W735 103 aaPredicted RBP7.44□□□□□ -1.22
VPS41-209ENST00000457055 HYAL3O43820 417 aaPredicted RBP7.44□□□□□ -1.22
VPS41-209ENST00000457055 ALX3O95076 343 aa7.44□□□□□ -1.22
VPS41-209ENST00000457055 NAA30Q147X3 362 aaPredicted RBP7.44□□□□□ -1.22
VPS41-209ENST00000457055 CAPN12Q6ZSI9 719 aa7.44□□□□□ -1.22
VPS41-209ENST00000457055 AEBP1Q8IUX7 1158 aa7.44□□□□□ -1.22
VPS41-209ENST00000457055 PTCD1O75127 700 aaKnown RBP7.43□□□□□ -1.22
VPS41-209ENST00000457055 SETDB1Q15047 1291 aa7.43□□□□□ -1.22
VPS41-209ENST00000457055 TMED8Q6PL24 325 aaPredicted RBP7.43□□□□□ -1.22
VPS41-209ENST00000457055 TEX2Q8IWB9 1127 aa7.43□□□□□ -1.22
VPS41-209ENST00000457055 DZIP1LQ8IYY4 767 aaKnown RBP7.43□□□□□ -1.22
VPS41-209ENST00000457055 CACTIN-AS1Q8N1I8 211 aa7.43□□□□□ -1.22
VPS41-209ENST00000457055 OR13H1Q8NG92 308 aa7.43□□□□□ -1.22
VPS41-209ENST00000457055 RNF112Q9ULX5 631 aa7.43□□□□□ -1.22
VPS41-209ENST00000457055 ZAP70P43403 619 aa7.42□□□□□ -1.22
VPS41-209ENST00000457055 HYAL2Q12891 473 aa7.42□□□□□ -1.22
VPS41-209ENST00000457055 TMEM164Q5U3C3 297 aa7.42□□□□□ -1.22
VPS41-209ENST00000457055 TMEM130Q8N3G9 435 aa7.42□□□□□ -1.22
VPS41-209ENST00000457055 ZNF526Q8TF50 670 aaPredicted RBP7.42□□□□□ -1.22
VPS41-209ENST00000457055 SPACA7Q96KW9 195 aa7.42□□□□□ -1.22
VPS41-209ENST00000457055 TRAIPQ9BWF2 469 aa7.42□□□□□ -1.22
VPS41-209ENST00000457055 MUC3BQ9H195 1237 aa7.42□□□□□ -1.22
VPS41-209ENST00000457055 FNDC3AQ9Y2H6 1198 aaKnown RBP7.42□□□□□ -1.22
VPS41-209ENST00000457055 PPME1Q9Y570 386 aa7.42□□□□□ -1.22
VPS41-209ENST00000457055 ATG7O95352 703 aa7.41□□□□□ -1.22
VPS41-209ENST00000457055 ATP11AP98196 1134 aa7.41□□□□□ -1.22
VPS41-209ENST00000457055 CCDC27Q2M243 656 aa7.41□□□□□ -1.22
VPS41-209ENST00000457055 COL13A1Q5TAT6 717 aaPredicted RBP7.41□□□□□ -1.22
VPS41-209ENST00000457055 TTC39BQ5VTQ0 682 aaPredicted RBP7.41□□□□□ -1.22
VPS41-209ENST00000457055 AGGF1Q8N302 714 aaeCLIP7.41□□□□□ -1.22
VPS41-209ENST00000457055 GPR152Q8TDT2 470 aa7.41□□□□□ -1.22
VPS41-209ENST00000457055 ATAD2BQ9ULI0 1458 aa7.41□□□□□ -1.22
VPS41-209ENST00000457055 SMNDC1O75940 238 aaKnown RBP eCLIP7.4□□□□□ -1.22
VPS41-209ENST00000457055 GLB1P16278 677 aa7.4□□□□□ -1.22
VPS41-209ENST00000457055 FSTP19883 344 aa7.4□□□□□ -1.22
VPS41-209ENST00000457055 SCNN1AP37088 669 aa7.4□□□□□ -1.22
VPS41-209ENST00000457055 SRPK2P78362 688 aaKnown RBP7.4□□□□□ -1.22
VPS41-209ENST00000457055 CEP135Q66GS9 1140 aa7.4□□□□□ -1.22
VPS41-209ENST00000457055 ABTB2Q8N961 1025 aa7.4□□□□□ -1.22
VPS41-209ENST00000457055 LACRTQ9GZZ8 138 aa7.4□□□□□ -1.22
VPS41-209ENST00000457055 PRDM16Q9HAZ2 1276 aa7.4□□□□□ -1.22
VPS41-209ENST00000457055 STIM2Q9P246 746 aa7.4□□□□□ -1.22
VPS41-209ENST00000457055 LAMC3Q9Y6N6 1575 aa7.39□□□□□ -1.23
VPS41-209ENST00000457055 DCAF1Q9Y4B6 1507 aa7.39□□□□□ -1.23
VPS41-209ENST00000457055 ZCCHC6Q5VYS8 1495 aaKnown RBP7.39□□□□□ -1.23
VPS41-209ENST00000457055 LINC01387J3KSC0 135 aa7.39□□□□□ -1.23
VPS41-209ENST00000457055 TXNDC11Q6PKC3 985 aa7.39□□□□□ -1.23
VPS41-209ENST00000457055 Q6ZS46 218 aa7.39□□□□□ -1.23
VPS41-209ENST00000457055 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.39□□□□□ -1.23
VPS41-209ENST00000457055 CLP1Q92989 425 aaKnown RBP7.39□□□□□ -1.23
VPS41-209ENST00000457055 KRTAP9-2Q9BYQ4 174 aa7.39□□□□□ -1.23
VPS41-209ENST00000457055 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.38□□□□□ -1.23
VPS41-209ENST00000457055 CDC27P30260 824 aa7.38□□□□□ -1.23
VPS41-209ENST00000457055 RBM10P98175 930 aaKnown RBP7.38□□□□□ -1.23
VPS41-209ENST00000457055 GALNT11Q8NCW6 608 aa7.38□□□□□ -1.23
VPS41-209ENST00000457055 RASSF4Q9H2L5 321 aa7.38□□□□□ -1.23
VPS41-209ENST00000457055 ABI2Q9NYB9 513 aaPredicted RBP7.38□□□□□ -1.23
VPS41-209ENST00000457055 ZBTB39O15060 712 aa7.37□□□□□ -1.23
VPS41-209ENST00000457055 CDC25BP30305 580 aa7.37□□□□□ -1.23
VPS41-209ENST00000457055 ACAD11Q709F0 780 aa7.37□□□□□ -1.23
VPS41-209ENST00000457055 KIF4AO95239 1232 aa7.36□□□□□ -1.23
VPS41-209ENST00000457055 WISP1O95388 367 aa7.36□□□□□ -1.23
VPS41-209ENST00000457055 CYP2E1P05181 493 aaPredicted RBP7.36□□□□□ -1.23
VPS41-209ENST00000457055 CD68P34810 354 aaPredicted RBP7.36□□□□□ -1.23
VPS41-209ENST00000457055 SLC51AQ86UW1 340 aa7.36□□□□□ -1.23
VPS41-209ENST00000457055 NCAPG2Q86XI2 1143 aa7.36□□□□□ -1.23
VPS41-209ENST00000457055 CARD10Q9BWT7 1032 aa7.36□□□□□ -1.23
VPS41-209ENST00000457055 GZF1Q9H116 711 aaPredicted RBP7.36□□□□□ -1.23
VPS41-209ENST00000457055 PDS5BQ9NTI5 1447 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 KRTAP9-6A0A140TA67 174 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 MCCP23508 829 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 ATP2B4P23634 1241 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 FAM117BQ6P1L5 589 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 PBXIP1Q96AQ6 731 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 PBX4Q9BYU1 374 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 PRDM10Q9NQV6 1147 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 PCMTD2Q9NV79 361 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 RAXQ9Y2V3 346 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 ARAP1Q96P48 1450 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 MRC2Q9UBG0 1479 aa7.35□□□□□ -1.23
VPS41-209ENST00000457055 WDR62O43379 1518 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 FAM177BA6PVY3 158 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 MAFGO15525 162 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 CANXP27824 592 aaKnown RBP7.34□□□□□ -1.23
VPS41-209ENST00000457055 SSTR4P31391 388 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 ANAPC15P60006 121 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 PDE12Q6L8Q7 609 aaKnown RBP7.34□□□□□ -1.23
VPS41-209ENST00000457055 ADAMTSL4Q6UY14 1074 aa7.34□□□□□ -1.23
VPS41-209ENST00000457055 ZNF438Q7Z4V0 828 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms