RNA–Protein interactions for RNA: ENST00000457035.5

ATG4A-206, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 939 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-206ENST00000457035 COL4A5P29400 1685 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 C6orf229H3BNL8 230 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 SRGAP3O43295 1099 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 TAF5LO75529 589 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 ATP2B4P23634 1241 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 KIAA2012Q0VF49 1180 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 AOC3Q16853 763 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 WASHC4Q2M389 1173 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 ATG9AQ7Z3C6 839 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 HELBQ8NG08 1087 aaPredicted RBP12.54□□□□□ -0.4
ATG4A-206ENST00000457035 RRAGCQ9HB90 399 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 COPRSQ9NQ92 184 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 CNNM1Q9NRU3 951 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 LEMD3Q9Y2U8 911 aa12.54□□□□□ -0.4
ATG4A-206ENST00000457035 SUPT16HQ9Y5B9 1047 aaKnown RBP12.54□□□□□ -0.4
ATG4A-206ENST00000457035 FZD9O00144 591 aa12.53□□□□□ -0.4
ATG4A-206ENST00000457035 SNAP23O00161 211 aa12.53□□□□□ -0.4
ATG4A-206ENST00000457035 EYA2O00167 538 aa12.53□□□□□ -0.4
ATG4A-206ENST00000457035 PPIP5K2O43314 1243 aa12.53□□□□□ -0.4
ATG4A-206ENST00000457035 UFL1O94874 794 aa12.53□□□□□ -0.4
ATG4A-206ENST00000457035 LARGE2Q8N3Y3 721 aa12.53□□□□□ -0.4
ATG4A-206ENST00000457035 RBM46Q8TBY0 533 aaKnown RBP12.53□□□□□ -0.4
ATG4A-206ENST00000457035 SSH3Q8TE77 659 aa12.53□□□□□ -0.4
ATG4A-206ENST00000457035 GPR101Q96P66 508 aaPredicted RBP12.53□□□□□ -0.4
ATG4A-206ENST00000457035 CHMP4BQ9H444 224 aaKnown RBP12.53□□□□□ -0.4
ATG4A-206ENST00000457035 PA2G4Q9UQ80 394 aaKnown RBP12.53□□□□□ -0.4
ATG4A-206ENST00000457035 ZC3H4Q9UPT8 1303 aaKnown RBP12.53□□□□□ -0.4
ATG4A-206ENST00000457035 RIMBP2O15034 1052 aa12.52□□□□□ -0.41
ATG4A-206ENST00000457035 HTRA3P83110 453 aa12.52□□□□□ -0.41
ATG4A-206ENST00000457035 CEP85Q6P2H3 762 aa12.52□□□□□ -0.41
ATG4A-206ENST00000457035 TXNRD3Q86VQ6 643 aa12.52□□□□□ -0.41
ATG4A-206ENST00000457035 VGLL2Q8N8G2 317 aa12.52□□□□□ -0.41
ATG4A-206ENST00000457035 JDP2Q8WYK2 163 aa12.52□□□□□ -0.41
ATG4A-206ENST00000457035 EYA3Q99504 573 aa12.52□□□□□ -0.41
ATG4A-206ENST00000457035 ZC3H12CQ9C0D7 883 aaKnown RBP12.52□□□□□ -0.41
ATG4A-206ENST00000457035 ZNF804BA4D1E1 1349 aa12.52□□□□□ -0.41
ATG4A-206ENST00000457035 MROH5Q6ZUA9 1318 aa12.52□□□□□ -0.41
ATG4A-206ENST00000457035 SCN9AQ15858 1988 aa12.52□□□□□ -0.41
ATG4A-206ENST00000457035 CIAO1O76071 339 aa12.51□□□□□ -0.41
ATG4A-206ENST00000457035 SIL1Q9H173 461 aa12.51□□□□□ -0.41
ATG4A-206ENST00000457035 ZNRF3Q9ULT6 936 aa12.51□□□□□ -0.41
ATG4A-206ENST00000457035 IRS2Q9Y4H2 1338 aa12.51□□□□□ -0.41
ATG4A-206ENST00000457035 GLTPD2A6NH11 291 aa12.5□□□□□ -0.41
ATG4A-206ENST00000457035 YDJCA8MPS7 323 aa12.5□□□□□ -0.41
ATG4A-206ENST00000457035 PDE8BO95263 885 aa12.5□□□□□ -0.41
ATG4A-206ENST00000457035 KLRK1P26718 216 aa12.5□□□□□ -0.41
ATG4A-206ENST00000457035 VASPP50552 380 aaPredicted RBP12.5□□□□□ -0.41
ATG4A-206ENST00000457035 UBE4AQ14139 1066 aa12.5□□□□□ -0.41
ATG4A-206ENST00000457035 METTL24Q5JXM2 366 aa12.5□□□□□ -0.41
ATG4A-206ENST00000457035 C15orf52Q6ZUT6 534 aaKnown RBP12.5□□□□□ -0.41
ATG4A-206ENST00000457035 SIRT2Q8IXJ6 389 aa12.5□□□□□ -0.41
ATG4A-206ENST00000457035 RPAP2Q8IXW5 612 aaPredicted RBP12.5□□□□□ -0.41
ATG4A-206ENST00000457035 NIM1KQ8IY84 436 aa12.5□□□□□ -0.41
ATG4A-206ENST00000457035 MED23Q9ULK4 1368 aa12.49□□□□□ -0.41
ATG4A-206ENST00000457035 FGFR2P21802 821 aa12.49□□□□□ -0.41
ATG4A-206ENST00000457035 IL15P40933 162 aaPredicted RBP12.49□□□□□ -0.41
ATG4A-206ENST00000457035 DOK7Q18PE1 504 aa12.49□□□□□ -0.41
ATG4A-206ENST00000457035 DPY19L2Q6NUT2 758 aa12.49□□□□□ -0.41
ATG4A-206ENST00000457035 DNAJC5GQ8N7S2 189 aa12.49□□□□□ -0.41
ATG4A-206ENST00000457035 CRBNQ96SW2 442 aa12.49□□□□□ -0.41
ATG4A-206ENST00000457035 DBNDD1Q9H9R9 158 aa12.49□□□□□ -0.41
ATG4A-206ENST00000457035 KCNQ5Q9NR82 932 aa12.49□□□□□ -0.41
ATG4A-206ENST00000457035 NOP58Q9Y2X3 529 aaKnown RBP12.49□□□□□ -0.41
ATG4A-206ENST00000457035 ZNF541Q9H0D2 1346 aa12.48□□□□□ -0.41
ATG4A-206ENST00000457035 DDNO94850 711 aaPredicted RBP12.48□□□□□ -0.41
ATG4A-206ENST00000457035 KCNJ4P48050 445 aa12.48□□□□□ -0.41
ATG4A-206ENST00000457035 CXCL9Q07325 125 aa12.48□□□□□ -0.41
ATG4A-206ENST00000457035 FSTL1Q12841 308 aa12.48□□□□□ -0.41
ATG4A-206ENST00000457035 CEP126Q9P2H0 1117 aa12.48□□□□□ -0.41
ATG4A-206ENST00000457035 PSME4Q14997 1843 aa12.48□□□□□ -0.41
ATG4A-206ENST00000457035 POTECB2RU33 542 aa12.47□□□□□ -0.41
ATG4A-206ENST00000457035 ECE2O60344 883 aa12.47□□□□□ -0.41
ATG4A-206ENST00000457035 SURF6O75683 361 aaKnown RBP12.47□□□□□ -0.41
ATG4A-206ENST00000457035 SASH1O94885 1247 aa12.47□□□□□ -0.41
ATG4A-206ENST00000457035 EIF6P56537 245 aaKnown RBP12.47□□□□□ -0.41
ATG4A-206ENST00000457035 G3BP1Q13283 466 aaKnown RBP eCLIP12.47□□□□□ -0.41
ATG4A-206ENST00000457035 PODNQ7Z5L7 613 aa12.47□□□□□ -0.41
ATG4A-206ENST00000457035 SMC1BQ8NDV3 1235 aa12.47□□□□□ -0.41
ATG4A-206ENST00000457035 FAM84BQ96KN1 310 aaPredicted RBP12.47□□□□□ -0.41
ATG4A-206ENST00000457035 COA1Q9GZY4 146 aa12.47□□□□□ -0.41
ATG4A-206ENST00000457035 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.47□□□□□ -0.41
ATG4A-206ENST00000457035 RAD17O75943 681 aa12.46□□□□□ -0.41
ATG4A-206ENST00000457035 TFCP2Q12800 502 aa12.46□□□□□ -0.41
ATG4A-206ENST00000457035 FBXO33Q7Z6M2 555 aa12.46□□□□□ -0.41
ATG4A-206ENST00000457035 GPC2Q8N158 579 aa12.46□□□□□ -0.41
ATG4A-206ENST00000457035 KLRG1Q96E93 195 aa12.46□□□□□ -0.41
ATG4A-206ENST00000457035 CD209Q9NNX6 404 aa12.46□□□□□ -0.41
ATG4A-206ENST00000457035 PCDHB15Q9Y5E8 787 aa12.46□□□□□ -0.41
ATG4A-206ENST00000457035 G3V3G9 751 aa12.45□□□□□ -0.42
ATG4A-206ENST00000457035 IL1R1P14778 569 aa12.45□□□□□ -0.42
ATG4A-206ENST00000457035 PUM3Q15397 648 aaKnown RBP12.45□□□□□ -0.42
ATG4A-206ENST00000457035 DCAF8Q5TAQ9 597 aa12.45□□□□□ -0.42
ATG4A-206ENST00000457035 CIAPIN1Q6FI81 312 aa12.45□□□□□ -0.42
ATG4A-206ENST00000457035 RASEFQ8IZ41 740 aa12.45□□□□□ -0.42
ATG4A-206ENST00000457035 LPIN2Q92539 896 aa12.45□□□□□ -0.42
ATG4A-206ENST00000457035 L3MBTL3Q96JM7 780 aaPredicted RBP12.45□□□□□ -0.42
ATG4A-206ENST00000457035 TSPYL2Q9H2G4 693 aaPredicted RBP12.45□□□□□ -0.42
ATG4A-206ENST00000457035 SCN4AP35499 1836 aa12.44□□□□□ -0.42
ATG4A-206ENST00000457035 PSMD14O00487 310 aa12.44□□□□□ -0.42
ATG4A-206ENST00000457035 HMMRO75330 724 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms