RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 GPTP24298 496 aa17.82■□□□□ 0.44
LDLR-202ENST00000455727 ATP2B3Q16720 1220 aa17.82■□□□□ 0.44
LDLR-202ENST00000455727 LDHAL6AQ6ZMR3 332 aa17.82■□□□□ 0.44
LDLR-202ENST00000455727 FGD1P98174 961 aa17.82■□□□□ 0.44
LDLR-202ENST00000455727 GREM2Q9H772 168 aa17.82■□□□□ 0.44
LDLR-202ENST00000455727 DOT1LQ8TEK3 1739 aa17.81■□□□□ 0.44
LDLR-202ENST00000455727 IRS4O14654 1257 aaPredicted RBP17.81■□□□□ 0.44
LDLR-202ENST00000455727 PDE8AO60658 829 aa17.81■□□□□ 0.44
LDLR-202ENST00000455727 SCRN1Q12765 414 aa17.81■□□□□ 0.44
LDLR-202ENST00000455727 METTL24Q5JXM2 366 aa17.81■□□□□ 0.44
LDLR-202ENST00000455727 TTC6Q86TZ1 520 aa17.81■□□□□ 0.44
LDLR-202ENST00000455727 SYNE4Q8N205 404 aa17.81■□□□□ 0.44
LDLR-202ENST00000455727 RNF214Q8ND24 703 aa17.81■□□□□ 0.44
LDLR-202ENST00000455727 AK7Q96M32 723 aa17.81■□□□□ 0.44
LDLR-202ENST00000455727 CCDC85AQ96PX6 553 aaPredicted RBP17.81■□□□□ 0.44
LDLR-202ENST00000455727 JAK2O60674 1132 aa17.81■□□□□ 0.44
LDLR-202ENST00000455727 FERMT3Q86UX7 667 aa17.81■□□□□ 0.44
LDLR-202ENST00000455727 APPBP2Q92624 585 aa17.81■□□□□ 0.44
LDLR-202ENST00000455727 ZSCAN16Q9H4T2 348 aaPredicted RBP17.81■□□□□ 0.44
LDLR-202ENST00000455727 TRMT112Q9UI30 125 aaKnown RBP17.81■□□□□ 0.44
LDLR-202ENST00000455727 SCARF1Q14162 830 aa17.8■□□□□ 0.44
LDLR-202ENST00000455727 ZNF34Q8IZ26 560 aa17.8■□□□□ 0.44
LDLR-202ENST00000455727 VGLL2Q8N8G2 317 aa17.8■□□□□ 0.44
LDLR-202ENST00000455727 ZNF274Q96GC6 653 aaPredicted RBP17.8■□□□□ 0.44
LDLR-202ENST00000455727 NWD2Q9ULI1 1742 aa17.8■□□□□ 0.44
LDLR-202ENST00000455727 ZAP70P43403 619 aa17.8■□□□□ 0.44
LDLR-202ENST00000455727 HMGN5P82970 282 aaKnown RBP17.8■□□□□ 0.44
LDLR-202ENST00000455727 DZIP3Q86Y13 1208 aaKnown RBP17.8■□□□□ 0.44
LDLR-202ENST00000455727 FUCA2Q9BTY2 467 aa17.8■□□□□ 0.44
LDLR-202ENST00000455727 NOL7Q9UMY1 257 aaKnown RBP17.8■□□□□ 0.44
LDLR-202ENST00000455727 THRAP3Q9Y2W1 955 aaKnown RBP17.8■□□□□ 0.44
LDLR-202ENST00000455727 EVCP57679 992 aa17.79■□□□□ 0.44
LDLR-202ENST00000455727 LRRC2Q9BYS8 371 aa17.79■□□□□ 0.44
LDLR-202ENST00000455727 KIF3AQ9Y496 699 aa17.79■□□□□ 0.44
LDLR-202ENST00000455727 WASHC4Q2M389 1173 aa17.78■□□□□ 0.44
LDLR-202ENST00000455727 ZSCAN25Q6NSZ9 544 aa17.78■□□□□ 0.44
LDLR-202ENST00000455727 NSUN7Q8NE18 718 aaKnown RBP17.78■□□□□ 0.44
LDLR-202ENST00000455727 SYTL4Q96C24 671 aaPredicted RBP17.78■□□□□ 0.44
LDLR-202ENST00000455727 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.78■□□□□ 0.441e-9■■□□□ 12.1
LDLR-202ENST00000455727 CNNM1Q9NRU3 951 aa17.78■□□□□ 0.44
LDLR-202ENST00000455727 FOXP2O15409 715 aa17.78■□□□□ 0.44
LDLR-202ENST00000455727 PDE8BO95263 885 aa17.78■□□□□ 0.44
LDLR-202ENST00000455727 RESTQ13127 1097 aa17.78■□□□□ 0.44
LDLR-202ENST00000455727 NAA16Q6N069 864 aaPredicted RBP17.78■□□□□ 0.44
LDLR-202ENST00000455727 MSNP26038 577 aaKnown RBP17.77■□□□□ 0.44
LDLR-202ENST00000455727 EIF5P55010 431 aaKnown RBP17.77■□□□□ 0.44
LDLR-202ENST00000455727 TTF1Q15361 905 aaPredicted RBP17.77■□□□□ 0.44
LDLR-202ENST00000455727 IMMTQ16891 758 aaKnown RBP17.77■□□□□ 0.44
LDLR-202ENST00000455727 SPATA32Q96LK8 384 aa17.77■□□□□ 0.44
LDLR-202ENST00000455727 MYH15Q9Y2K3 1946 aa17.77■□□□□ 0.44
LDLR-202ENST00000455727 LRP5O75197 1615 aa17.77■□□□□ 0.44
LDLR-202ENST00000455727 NRAPQ86VF7 1730 aa17.77■□□□□ 0.44
LDLR-202ENST00000455727 H3BQV1 296 aa17.77■□□□□ 0.43
LDLR-202ENST00000455727 MCM5P33992 734 aa17.77■□□□□ 0.43
LDLR-202ENST00000455727 APOBRQ0VD83 1088 aa17.77■□□□□ 0.43
LDLR-202ENST00000455727 IFFO2Q5TF58 517 aa17.77■□□□□ 0.43
LDLR-202ENST00000455727 FAM173BQ6P4H8 233 aa17.77■□□□□ 0.43
LDLR-202ENST00000455727 LEO1Q8WVC0 666 aaPredicted RBP17.77■□□□□ 0.43
LDLR-202ENST00000455727 CCDC39Q9UFE4 941 aa17.77■□□□□ 0.43
LDLR-202ENST00000455727 CICQ96RK0 1608 aaPredicted RBP17.77■□□□□ 0.43
LDLR-202ENST00000455727 A0A0G2JLW4 131 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 CTDNEP1O95476 244 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 FGAP02671 866 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 MCAMP43121 646 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 TTLL5Q6EMB2 1281 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 TBC1D2BQ9UPU7 963 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 SPATA31A1Q5TZJ5 1347 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 UBN2Q6ZU65 1347 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 RREB1Q92766 1687 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 ARAP2Q8WZ64 1704 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 ATRNO75882 1429 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 SALL1Q9NSC2 1324 aa17.76■□□□□ 0.43
LDLR-202ENST00000455727 PDIA3P30101 505 aaKnown RBP17.76■□□□□ 0.43
LDLR-202ENST00000455727 DDX60Q8IY21 1712 aaKnown RBP17.75■□□□□ 0.43
LDLR-202ENST00000455727 MROH5Q6ZUA9 1318 aa17.75■□□□□ 0.43
LDLR-202ENST00000455727 PUS7LQ9H0K6 701 aaKnown RBP17.75■□□□□ 0.43
LDLR-202ENST00000455727 CFAP45Q9UL16 551 aa17.75■□□□□ 0.43
LDLR-202ENST00000455727 WDR19Q8NEZ3 1342 aa17.75■□□□□ 0.43
LDLR-202ENST00000455727 UQCRFS1P1P0C7P4 283 aa17.75■□□□□ 0.43
LDLR-202ENST00000455727 ARID4AP29374 1257 aaPredicted RBP17.75■□□□□ 0.43
LDLR-202ENST00000455727 ADD2P35612 726 aa17.75■□□□□ 0.43
LDLR-202ENST00000455727 INTS5Q6P9B9 1019 aaKnown RBP17.75■□□□□ 0.43
LDLR-202ENST00000455727 GIMAP6Q6P9H5 292 aa17.75■□□□□ 0.43
LDLR-202ENST00000455727 DDX11Q96FC9 970 aa17.75■□□□□ 0.43
LDLR-202ENST00000455727 TFIP11Q9UBB9 837 aaKnown RBP17.75■□□□□ 0.43
LDLR-202ENST00000455727 PTPDC1A2A3K4 754 aa17.74■□□□□ 0.43
LDLR-202ENST00000455727 GPAA1O43292 621 aa17.74■□□□□ 0.43
LDLR-202ENST00000455727 UBE3CQ15386 1083 aa17.74■□□□□ 0.43
LDLR-202ENST00000455727 DDB1Q16531 1140 aa17.74■□□□□ 0.43
LDLR-202ENST00000455727 GOLGA6L4A6NEF3 574 aa17.73■□□□□ 0.43
LDLR-202ENST00000455727 HCLS1P14317 486 aaPredicted RBP17.73■□□□□ 0.43
LDLR-202ENST00000455727 FGFR2P21802 821 aa17.73■□□□□ 0.43
LDLR-202ENST00000455727 PUM3Q15397 648 aaKnown RBP17.73■□□□□ 0.43
LDLR-202ENST00000455727 ATL3Q6DD88 541 aa17.73■□□□□ 0.43
LDLR-202ENST00000455727 PI16Q6UXB8 463 aa17.73■□□□□ 0.43
LDLR-202ENST00000455727 CCDC87Q9NVE4 849 aa17.73■□□□□ 0.43
LDLR-202ENST00000455727 ZKSCAN5Q9Y2L8 839 aa17.73■□□□□ 0.43
LDLR-202ENST00000455727 SLIT2O94813 1529 aa17.73■□□□□ 0.43
LDLR-202ENST00000455727 ZNF500O60304 480 aaPredicted RBP17.73■□□□□ 0.43
LDLR-202ENST00000455727 CCDC192P0DO97 292 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms