RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 CHRNA5P30532 468 aa10.93□□□□□ -0.66
COL28A1-205ENST00000453441 CC2D2BQ6DHV5 1058 aa10.93□□□□□ -0.66
COL28A1-205ENST00000453441 USP44Q9H0E7 712 aa10.93□□□□□ -0.66
COL28A1-205ENST00000453441 BBOX1O75936 387 aa10.92□□□□□ -0.66
COL28A1-205ENST00000453441 CCDC24Q8N4L8 307 aa10.92□□□□□ -0.66
COL28A1-205ENST00000453441 TMEM57Q8N5G2 664 aa10.92□□□□□ -0.66
COL28A1-205ENST00000453441 ZNF622Q969S3 477 aaKnown RBP eCLIP10.92□□□□□ -0.66
COL28A1-205ENST00000453441 CDC5LQ99459 802 aaKnown RBP10.92□□□□□ -0.66
COL28A1-205ENST00000453441 TMX4Q9H1E5 349 aaPredicted RBP10.92□□□□□ -0.66
COL28A1-205ENST00000453441 DDX19BQ9UMR2 479 aa10.92□□□□□ -0.66
COL28A1-205ENST00000453441 CSF1RP07333 972 aa10.91□□□□□ -0.66
COL28A1-205ENST00000453441 NBPF7P0C2Y1 421 aaPredicted RBP10.91□□□□□ -0.66
COL28A1-205ENST00000453441 RRP1P56182 461 aaKnown RBP10.91□□□□□ -0.66
COL28A1-205ENST00000453441 GRAPQ13588 217 aa10.91□□□□□ -0.66
COL28A1-205ENST00000453441 RABL6Q3YEC7 729 aaPredicted RBP10.91□□□□□ -0.66
COL28A1-205ENST00000453441 RTL5Q5HYW3 569 aaPredicted RBP10.91□□□□□ -0.66
COL28A1-205ENST00000453441 ITPRIPQ8IWB1 547 aa10.91□□□□□ -0.66
COL28A1-205ENST00000453441 SYNE4Q8N205 404 aa10.91□□□□□ -0.66
COL28A1-205ENST00000453441 TTLL11Q8NHH1 800 aa10.91□□□□□ -0.66
COL28A1-205ENST00000453441 GRAPLQ8TC17 118 aaPredicted RBP10.91□□□□□ -0.66
COL28A1-205ENST00000453441 ZDHHC16Q969W1 377 aa10.91□□□□□ -0.66
COL28A1-205ENST00000453441 CLUAP1Q96AJ1 413 aa10.91□□□□□ -0.66
COL28A1-205ENST00000453441 MVPQ14764 893 aaKnown RBP10.9□□□□□ -0.66
COL28A1-205ENST00000453441 GPR162Q16538 588 aa10.9□□□□□ -0.66
COL28A1-205ENST00000453441 PRPF40BQ6NWY9 871 aaKnown RBP10.9□□□□□ -0.66
COL28A1-205ENST00000453441 POTEEQ6S8J3 1075 aa10.9□□□□□ -0.66
COL28A1-205ENST00000453441 EPAS1Q99814 870 aa10.9□□□□□ -0.66
COL28A1-205ENST00000453441 ANKRD18BA2A2Z9 1011 aa10.89□□□□□ -0.67
COL28A1-205ENST00000453441 PPEF1O14829 653 aaPredicted RBP10.89□□□□□ -0.67
COL28A1-205ENST00000453441 GNAI2P04899 355 aa10.89□□□□□ -0.67
COL28A1-205ENST00000453441 LSM11P83369 360 aaKnown RBP eCLIP10.89□□□□□ -0.67
COL28A1-205ENST00000453441 FOXO4P98177 505 aa10.89□□□□□ -0.67
COL28A1-205ENST00000453441 RTKN2Q8IZC4 609 aa10.89□□□□□ -0.67
COL28A1-205ENST00000453441 FBXW7Q969H0 707 aa10.89□□□□□ -0.67
COL28A1-205ENST00000453441 SUCLG2Q96I99 432 aa10.89□□□□□ -0.67
COL28A1-205ENST00000453441 BCS1LQ9Y276 419 aa10.89□□□□□ -0.67
COL28A1-205ENST00000453441 PCDHGA10Q9Y5H3 936 aa10.89□□□□□ -0.67
COL28A1-205ENST00000453441 SLX4Q8IY92 1834 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 RLBP1P12271 317 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 IGHMBP2P38935 993 aaKnown RBP10.88□□□□□ -0.67
COL28A1-205ENST00000453441 RPS8P62241 208 aaKnown RBP10.88□□□□□ -0.67
COL28A1-205ENST00000453441 IFIT5Q13325 482 aaKnown RBP10.88□□□□□ -0.67
COL28A1-205ENST00000453441 MTX1Q13505 466 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 AAMPQ13685 434 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 CACNA1SQ13698 1873 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 CCDC57Q2TAC2 916 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 CCDC93Q567U6 631 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 TYW1BQ6NUM6 668 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 LMBR1LQ6UX01 489 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 ANKRD18AQ8IVF6 992 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 SPNS2Q8IVW8 549 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 SP8Q8IXZ3 490 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 KCNV2Q8TDN2 545 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 PANK1Q8TE04 598 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 JARID2Q92833 1246 aaPredicted RBP10.88□□□□□ -0.67
COL28A1-205ENST00000453441 MEIS3Q99687 375 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 ATP6V0A2Q9Y487 856 aa10.88□□□□□ -0.67
COL28A1-205ENST00000453441 LTBP3Q9NS15 1303 aa10.87□□□□□ -0.67
COL28A1-205ENST00000453441 LRRC37AA6NMS7 1700 aa10.87□□□□□ -0.67
COL28A1-205ENST00000453441 ZBTB7BO15156 539 aaPredicted RBP10.87□□□□□ -0.67
COL28A1-205ENST00000453441 CENPBP07199 599 aaPredicted RBP10.87□□□□□ -0.67
COL28A1-205ENST00000453441 ITGA6P23229 1130 aa10.87□□□□□ -0.67
COL28A1-205ENST00000453441 FAM161AQ3B820 660 aa10.87□□□□□ -0.67
COL28A1-205ENST00000453441 ANKRD44Q8N8A2 993 aa10.87□□□□□ -0.67
COL28A1-205ENST00000453441 C7orf43Q8WVR3 580 aa10.87□□□□□ -0.67
COL28A1-205ENST00000453441 KAZALD1Q96I82 304 aa10.87□□□□□ -0.67
COL28A1-205ENST00000453441 BICC1Q9H694 974 aaKnown RBP10.87□□□□□ -0.67
COL28A1-205ENST00000453441 GREM2Q9H772 168 aa10.87□□□□□ -0.67
COL28A1-205ENST00000453441 TNNQ9UQP3 1299 aa10.87□□□□□ -0.67
COL28A1-205ENST00000453441 PLIN1O60240 522 aa10.86□□□□□ -0.67
COL28A1-205ENST00000453441 YBX3P16989 372 aaKnown RBP eCLIP10.86□□□□□ -0.67
COL28A1-205ENST00000453441 TAF7LQ5H9L4 462 aa10.86□□□□□ -0.67
COL28A1-205ENST00000453441 EPHA10Q5JZY3 1008 aa10.86□□□□□ -0.67
COL28A1-205ENST00000453441 SUPT20HQ8NEM7 779 aa10.86□□□□□ -0.67
COL28A1-205ENST00000453441 MPHOSPH8Q99549 860 aa10.86□□□□□ -0.67
COL28A1-205ENST00000453441 VPS33BQ9H267 617 aa10.86□□□□□ -0.67
COL28A1-205ENST00000453441 BSDC1Q9NW68 430 aaPredicted RBP10.86□□□□□ -0.67
COL28A1-205ENST00000453441 CHMP3Q9Y3E7 222 aa10.86□□□□□ -0.67
COL28A1-205ENST00000453441 LRRFIP2Q9Y608 721 aaKnown RBP10.86□□□□□ -0.67
COL28A1-205ENST00000453441 FER1L6Q2WGJ9 1857 aa10.85□□□□□ -0.67
COL28A1-205ENST00000453441 C21orf2O43822 256 aa10.85□□□□□ -0.67
COL28A1-205ENST00000453441 PTPREP23469 700 aa10.85□□□□□ -0.67
COL28A1-205ENST00000453441 CELF1Q92879 486 aaKnown RBP10.85□□□□□ -0.67
COL28A1-205ENST00000453441 PSMD1Q99460 953 aa10.85□□□□□ -0.67
COL28A1-205ENST00000453441 ANKRD2Q9GZV1 360 aa10.85□□□□□ -0.67
COL28A1-205ENST00000453441 TAOK3Q9H2K8 898 aa10.85□□□□□ -0.67
COL28A1-205ENST00000453441 SEC31BQ9NQW1 1179 aa10.85□□□□□ -0.67
COL28A1-205ENST00000453441 COG6Q9Y2V7 657 aa10.85□□□□□ -0.67
COL28A1-205ENST00000453441 FKBP4Q02790 459 aaKnown RBP eCLIP10.84□□□□□ -0.67
COL28A1-205ENST00000453441 RPAP2Q8IXW5 612 aaPredicted RBP10.84□□□□□ -0.67
COL28A1-205ENST00000453441 DDX12PQ92771 950 aa10.84□□□□□ -0.67
COL28A1-205ENST00000453441 CCDC85AQ96PX6 553 aaPredicted RBP10.84□□□□□ -0.67
COL28A1-205ENST00000453441 ADAM33Q9BZ11 813 aa10.84□□□□□ -0.67
COL28A1-205ENST00000453441 ZBTB40Q9NUA8 1239 aa10.84□□□□□ -0.67
COL28A1-205ENST00000453441 PODXL2Q9NZ53 605 aa10.84□□□□□ -0.67
COL28A1-205ENST00000453441 SNED1Q8TER0 1413 aa10.84□□□□□ -0.67
COL28A1-205ENST00000453441 ZC3H4Q9UPT8 1303 aaKnown RBP10.84□□□□□ -0.67
COL28A1-205ENST00000453441 TK2O00142 265 aa10.83□□□□□ -0.68
COL28A1-205ENST00000453441 HMMRO75330 724 aa10.83□□□□□ -0.68
COL28A1-205ENST00000453441 PSEN2P49810 448 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms