RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 PTPRAP18433 802 aa7.31□□□□□ -1.24
USP40-209ENST00000452724 USP5P45974 858 aa7.31□□□□□ -1.24
USP40-209ENST00000452724 SF3B2Q13435 895 aaKnown RBP7.31□□□□□ -1.24
USP40-209ENST00000452724 SETDB1Q15047 1291 aa7.31□□□□□ -1.24
USP40-209ENST00000452724 XP32Q5T750 250 aa7.31□□□□□ -1.24
USP40-209ENST00000452724 IVNS1ABPQ9Y6Y0 642 aa7.31□□□□□ -1.24
USP40-209ENST00000452724 LINC01387J3KSC0 135 aa7.3□□□□□ -1.24
USP40-209ENST00000452724 CYP2E1P05181 493 aaPredicted RBP7.3□□□□□ -1.24
USP40-209ENST00000452724 CABP4P57796 275 aa7.3□□□□□ -1.24
USP40-209ENST00000452724 EHHADHQ08426 723 aa7.3□□□□□ -1.24
USP40-209ENST00000452724 ZNF211Q13398 564 aaPredicted RBP7.3□□□□□ -1.24
USP40-209ENST00000452724 CEP120Q8N960 986 aa7.3□□□□□ -1.24
USP40-209ENST00000452724 ANO2Q9NQ90 1003 aa7.3□□□□□ -1.24
USP40-209ENST00000452724 KANSL3Q9P2N6 904 aa7.3□□□□□ -1.24
USP40-209ENST00000452724 EGFL7Q9UHF1 273 aa7.3□□□□□ -1.24
USP40-209ENST00000452724 F8W735 103 aaPredicted RBP7.29□□□□□ -1.24
USP40-209ENST00000452724 MTMR3Q13615 1198 aa7.29□□□□□ -1.24
USP40-209ENST00000452724 KLHL23Q8NBE8 558 aa7.29□□□□□ -1.24
USP40-209ENST00000452724 ICMTO60725 284 aa7.28□□□□□ -1.24
USP40-209ENST00000452724 NPR3P17342 541 aa7.28□□□□□ -1.24
USP40-209ENST00000452724 CD68P34810 354 aaPredicted RBP7.28□□□□□ -1.24
USP40-209ENST00000452724 FKBP4Q02790 459 aaKnown RBP eCLIP7.28□□□□□ -1.24
USP40-209ENST00000452724 MEGF10Q96KG7 1140 aa7.28□□□□□ -1.24
USP40-209ENST00000452724 GGNBP2Q9H3C7 697 aa7.28□□□□□ -1.24
USP40-209ENST00000452724 CNTN3Q9P232 1028 aa7.28□□□□□ -1.24
USP40-209ENST00000452724 POLIQ9UNA4 740 aa7.28□□□□□ -1.24
USP40-209ENST00000452724 H3BRB1 525 aa7.27□□□□□ -1.25
USP40-209ENST00000452724 GLB1P16278 677 aa7.27□□□□□ -1.25
USP40-209ENST00000452724 TXNDC11Q6PKC3 985 aa7.27□□□□□ -1.25
USP40-209ENST00000452724 DZIP1LQ8IYY4 767 aaKnown RBP7.27□□□□□ -1.25
USP40-209ENST00000452724 C1orf127Q8N9H9 656 aa7.27□□□□□ -1.25
USP40-209ENST00000452724 WNT8BQ93098 351 aa7.27□□□□□ -1.25
USP40-209ENST00000452724 CEP41Q9BYV8 373 aa7.27□□□□□ -1.25
USP40-209ENST00000452724 ADAM19Q9H013 955 aa7.27□□□□□ -1.25
USP40-209ENST00000452724 TUT1Q9H6E5 874 aaKnown RBP7.27□□□□□ -1.25
USP40-209ENST00000452724 SEC31BQ9NQW1 1179 aa7.27□□□□□ -1.25
USP40-209ENST00000452724 SALL4Q9UJQ4 1053 aa7.27□□□□□ -1.25
USP40-209ENST00000452724 ZBTB7CA1YPR0 619 aa7.26□□□□□ -1.25
USP40-209ENST00000452724 SOWAHDA6NJG2 315 aa7.26□□□□□ -1.25
USP40-209ENST00000452724 H3BRJ5 948 aa7.26□□□□□ -1.25
USP40-209ENST00000452724 FSCN2O14926 492 aa7.26□□□□□ -1.25
USP40-209ENST00000452724 PHACTR2O75167 634 aa7.26□□□□□ -1.25
USP40-209ENST00000452724 ALX3O95076 343 aa7.26□□□□□ -1.25
USP40-209ENST00000452724 CDC25BP30305 580 aa7.26□□□□□ -1.25
USP40-209ENST00000452724 PRR23CQ6ZRP0 262 aa7.26□□□□□ -1.25
USP40-209ENST00000452724 ACAD11Q709F0 780 aa7.26□□□□□ -1.25
USP40-209ENST00000452724 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.26□□□□□ -1.25
USP40-209ENST00000452724 GLYCTKQ8IVS8 523 aa7.26□□□□□ -1.25
USP40-209ENST00000452724 SNX29Q8TEQ0 813 aa7.26□□□□□ -1.25
USP40-209ENST00000452724 POP1Q99575 1024 aaKnown RBP7.26□□□□□ -1.25
USP40-209ENST00000452724 PDE2AO00408 941 aaPredicted RBP7.25□□□□□ -1.25
USP40-209ENST00000452724 EDN3P14138 238 aa7.25□□□□□ -1.25
USP40-209ENST00000452724 EPHA1P21709 976 aa7.25□□□□□ -1.25
USP40-209ENST00000452724 ARL4DP49703 201 aa7.25□□□□□ -1.25
USP40-209ENST00000452724 PIP4K2BP78356 416 aa7.25□□□□□ -1.25
USP40-209ENST00000452724 Q6ZS46 218 aa7.25□□□□□ -1.25
USP40-209ENST00000452724 SLC51AQ86UW1 340 aa7.25□□□□□ -1.25
USP40-209ENST00000452724 GALNT11Q8NCW6 608 aa7.25□□□□□ -1.25
USP40-209ENST00000452724 SH2B1Q9NRF2 756 aaPredicted RBP7.25□□□□□ -1.25
USP40-209ENST00000452724 A6NHS1 94 aa7.24□□□□□ -1.25
USP40-209ENST00000452724 DUOXA2Q1HG44 320 aa7.24□□□□□ -1.25
USP40-209ENST00000452724 CARD10Q9BWT7 1032 aa7.24□□□□□ -1.25
USP40-209ENST00000452724 ZFP64Q9NPA5 681 aa7.24□□□□□ -1.25
USP40-209ENST00000452724 OSGEPQ9NPF4 335 aa7.24□□□□□ -1.25
USP40-209ENST00000452724 DZANK1Q9NVP4 752 aa7.24□□□□□ -1.25
USP40-209ENST00000452724 TNFRSF21O75509 655 aa7.23□□□□□ -1.25
USP40-209ENST00000452724 FOXD4L6Q3SYB3 417 aaPredicted RBP7.23□□□□□ -1.25
USP40-209ENST00000452724 ARTNQ5T4W7 220 aa7.23□□□□□ -1.25
USP40-209ENST00000452724 FOXD4L3Q6VB84 417 aaPredicted RBP7.23□□□□□ -1.25
USP40-209ENST00000452724 AGGF1Q8N302 714 aaeCLIP7.23□□□□□ -1.25
USP40-209ENST00000452724 TMEM102Q8N9M5 508 aaPredicted RBP7.23□□□□□ -1.25
USP40-209ENST00000452724 CHRDQ9H2X0 955 aa7.23□□□□□ -1.25
USP40-209ENST00000452724 GSC2O15499 205 aa7.22□□□□□ -1.25
USP40-209ENST00000452724 LRP8Q14114 963 aa7.22□□□□□ -1.25
USP40-209ENST00000452724 UVSSAQ2YD98 709 aa7.22□□□□□ -1.25
USP40-209ENST00000452724 NBPF11Q86T75 865 aa7.22□□□□□ -1.25
USP40-209ENST00000452724 OSMRQ99650 979 aa7.22□□□□□ -1.25
USP40-209ENST00000452724 BIN2Q9UBW5 565 aaPredicted RBP7.22□□□□□ -1.25
USP40-209ENST00000452724 AMOTL2Q9Y2J4 779 aa7.22□□□□□ -1.25
USP40-209ENST00000452724 EREGO14944 169 aa7.21□□□□□ -1.26
USP40-209ENST00000452724 DHX15O43143 795 aaKnown RBP7.21□□□□□ -1.26
USP40-209ENST00000452724 FZD6O60353 706 aa7.21□□□□□ -1.26
USP40-209ENST00000452724 ACPPP15309 386 aa7.21□□□□□ -1.26
USP40-209ENST00000452724 ARHGAP4P98171 946 aa7.21□□□□□ -1.26
USP40-209ENST00000452724 TRIM26Q12899 539 aaPredicted RBP7.21□□□□□ -1.26
USP40-209ENST00000452724 ECM1Q16610 540 aa7.21□□□□□ -1.26
USP40-209ENST00000452724 GZF1Q9H116 711 aaPredicted RBP7.21□□□□□ -1.26
USP40-209ENST00000452724 NFKBIEO00221 500 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 SART1O43290 800 aaKnown RBP7.2□□□□□ -1.26
USP40-209ENST00000452724 EIF4EBP3O60516 100 aaPredicted RBP7.2□□□□□ -1.26
USP40-209ENST00000452724 WISP1O95388 367 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 NEFLP07196 543 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 FSTP19883 344 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 C19orf57Q0VDD7 668 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 SND1Q7KZF4 910 aaKnown RBP eCLIP7.2□□□□□ -1.26
USP40-209ENST00000452724 GJD3Q8N144 294 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 SLC7A3Q8WY07 619 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 BSNDQ8WZ55 320 aa7.2□□□□□ -1.26
USP40-209ENST00000452724 UTP4Q969X6 686 aaKnown RBP7.2□□□□□ -1.26
USP40-209ENST00000452724 KLHDC7BQ96G42 594 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms