RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SSUH2Q9Y2M2 353 aa14.29□□□□□ -0.12
SCN9A-204ENST00000452182 ZNF804BA4D1E1 1349 aa14.28□□□□□ -0.12
SCN9A-204ENST00000452182 ARAP2Q8WZ64 1704 aa14.28□□□□□ -0.12
SCN9A-204ENST00000452182 FKBP4Q02790 459 aaKnown RBP eCLIP14.28□□□□□ -0.12
SCN9A-204ENST00000452182 C15orf52Q6ZUT6 534 aaKnown RBP14.28□□□□□ -0.12
SCN9A-204ENST00000452182 LPIN2Q92539 896 aa14.28□□□□□ -0.12
SCN9A-204ENST00000452182 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.28□□□□□ -0.12
SCN9A-204ENST00000452182 KDM2BQ8NHM5 1336 aa14.28□□□□□ -0.12
SCN9A-204ENST00000452182 NFKBIEO00221 500 aa14.27□□□□□ -0.12
SCN9A-204ENST00000452182 ZNF609O15014 1411 aa14.27□□□□□ -0.12
SCN9A-204ENST00000452182 GRIN3BO60391 1043 aa14.27□□□□□ -0.12
SCN9A-204ENST00000452182 UFL1O94874 794 aa14.27□□□□□ -0.12
SCN9A-204ENST00000452182 GPR162Q16538 588 aa14.27□□□□□ -0.12
SCN9A-204ENST00000452182 EYA3Q99504 573 aa14.27□□□□□ -0.12
SCN9A-204ENST00000452182 TAOK3Q9H2K8 898 aa14.27□□□□□ -0.12
SCN9A-204ENST00000452182 IRS2Q9Y4H2 1338 aa14.27□□□□□ -0.13
SCN9A-204ENST00000452182 MED23Q9ULK4 1368 aa14.27□□□□□ -0.13
SCN9A-204ENST00000452182 KCNJ4P48050 445 aa14.26□□□□□ -0.13
SCN9A-204ENST00000452182 ATP2B3Q16720 1220 aa14.26□□□□□ -0.13
SCN9A-204ENST00000452182 TNNI3KQ59H18 835 aa14.26□□□□□ -0.13
SCN9A-204ENST00000452182 CENPQQ7L2Z9 268 aaPredicted RBP14.26□□□□□ -0.13
SCN9A-204ENST00000452182 CLASRPQ8N2M8 674 aaKnown RBP14.26□□□□□ -0.13
SCN9A-204ENST00000452182 FPGT-TNNI3KV9GXZ4 949 aa14.26□□□□□ -0.13
SCN9A-204ENST00000452182 UTRNP46939 3433 aa14.26□□□□□ -0.13
SCN9A-204ENST00000452182 A0A1B0GUL7 405 aa14.26□□□□□ -0.13
SCN9A-204ENST00000452182 C6orf229H3BNL8 230 aa14.26□□□□□ -0.13
SCN9A-204ENST00000452182 IFIT1P09914 478 aaKnown RBP14.26□□□□□ -0.13
SCN9A-204ENST00000452182 SLC5A1P13866 664 aa14.26□□□□□ -0.13
SCN9A-204ENST00000452182 PELP1Q8IZL8 1130 aaKnown RBP14.26□□□□□ -0.13
SCN9A-204ENST00000452182 WTIPA6NIX2 430 aaPredicted RBP14.25□□□□□ -0.13
SCN9A-204ENST00000452182 SNAP23O00161 211 aa14.25□□□□□ -0.13
SCN9A-204ENST00000452182 APBB1O00213 710 aa14.25□□□□□ -0.13
SCN9A-204ENST00000452182 NUCB1Q02818 461 aa14.25□□□□□ -0.13
SCN9A-204ENST00000452182 KIAA2012Q0VF49 1180 aa14.25□□□□□ -0.13
SCN9A-204ENST00000452182 ARHGAP27Q6ZUM4 889 aa14.25□□□□□ -0.13
SCN9A-204ENST00000452182 IFNLR1Q8IU57 520 aaPredicted RBP14.25□□□□□ -0.13
SCN9A-204ENST00000452182 EAF2Q96CJ1 260 aaPredicted RBP14.25□□□□□ -0.13
SCN9A-204ENST00000452182 IL1RAPL2Q9NP60 686 aa14.25□□□□□ -0.13
SCN9A-204ENST00000452182 SBF1O95248 1867 aa14.25□□□□□ -0.13
SCN9A-204ENST00000452182 TIMM10P62072 90 aa14.24□□□□□ -0.13
SCN9A-204ENST00000452182 WASHC4Q2M389 1173 aa14.24□□□□□ -0.13
SCN9A-204ENST00000452182 ANKRD45Q5TZF3 282 aa14.24□□□□□ -0.13
SCN9A-204ENST00000452182 B4GALNT3Q6L9W6 998 aa14.24□□□□□ -0.13
SCN9A-204ENST00000452182 ZC3H12CQ9C0D7 883 aaKnown RBP14.24□□□□□ -0.13
SCN9A-204ENST00000452182 DICER1Q9UPY3 1922 aaKnown RBP14.23□□□□□ -0.13
SCN9A-204ENST00000452182 ZBTB47Q9UFB7 747 aaPredicted RBP14.23□□□□□ -0.13
SCN9A-204ENST00000452182 CCDC88AQ3V6T2 1871 aa14.23□□□□□ -0.13
SCN9A-204ENST00000452182 SMARCA5O60264 1052 aaPredicted RBP14.23□□□□□ -0.13
SCN9A-204ENST00000452182 KLRK1P26718 216 aa14.23□□□□□ -0.13
SCN9A-204ENST00000452182 IARSP41252 1262 aaKnown RBP14.23□□□□□ -0.13
SCN9A-204ENST00000452182 CAVIN4Q5BKX8 364 aa14.23□□□□□ -0.13
SCN9A-204ENST00000452182 AACSQ86V21 672 aa14.23□□□□□ -0.13
SCN9A-204ENST00000452182 TXNRD3Q86VQ6 643 aa14.23□□□□□ -0.13
SCN9A-204ENST00000452182 CHD1LQ86WJ1 897 aa14.23□□□□□ -0.13
SCN9A-204ENST00000452182 XAGE2Q96GT9 111 aa14.23□□□□□ -0.13
SCN9A-204ENST00000452182 NEUROD6Q96NK8 337 aa14.23□□□□□ -0.13
SCN9A-204ENST00000452182 ZNF277Q9NRM2 450 aaPredicted RBP14.23□□□□□ -0.13
SCN9A-204ENST00000452182 PPIP5K2O43314 1243 aa14.22□□□□□ -0.13
SCN9A-204ENST00000452182 IFIT2P09913 472 aaKnown RBP14.22□□□□□ -0.13
SCN9A-204ENST00000452182 LMNB1P20700 586 aa14.22□□□□□ -0.13
SCN9A-204ENST00000452182 RASSF7Q02833 373 aa14.22□□□□□ -0.13
SCN9A-204ENST00000452182 FBXO33Q7Z6M2 555 aa14.22□□□□□ -0.13
SCN9A-204ENST00000452182 FAM84BQ96KN1 310 aaPredicted RBP14.22□□□□□ -0.13
SCN9A-204ENST00000452182 COA1Q9GZY4 146 aa14.22□□□□□ -0.13
SCN9A-204ENST00000452182 DBNLQ9UJU6 430 aaKnown RBP14.22□□□□□ -0.13
SCN9A-204ENST00000452182 RIMBP2O15034 1052 aa14.21□□□□□ -0.13
SCN9A-204ENST00000452182 ADORA1P30542 326 aa14.21□□□□□ -0.13
SCN9A-204ENST00000452182 HIBADHP31937 336 aaKnown RBP14.21□□□□□ -0.13
SCN9A-204ENST00000452182 AOC3Q16853 763 aa14.21□□□□□ -0.13
SCN9A-204ENST00000452182 ZNF804AQ7Z570 1209 aa14.21□□□□□ -0.13
SCN9A-204ENST00000452182 GPR101Q96P66 508 aaPredicted RBP14.21□□□□□ -0.13
SCN9A-204ENST00000452182 DBNDD2Q9BQY9 259 aa14.21□□□□□ -0.13
SCN9A-204ENST00000452182 CCDC8Q9H0W5 538 aaPredicted RBP14.21□□□□□ -0.13
SCN9A-204ENST00000452182 GYG1P46976 350 aa14.2□□□□□ -0.14
SCN9A-204ENST00000452182 PRELPP51888 382 aa14.2□□□□□ -0.14
SCN9A-204ENST00000452182 CCDC102BQ68D86 513 aa14.2□□□□□ -0.14
SCN9A-204ENST00000452182 PODNQ7Z5L7 613 aa14.2□□□□□ -0.14
SCN9A-204ENST00000452182 LARGE2Q8N3Y3 721 aa14.2□□□□□ -0.14
SCN9A-204ENST00000452182 ZNF512BQ96KM6 892 aaPredicted RBP14.2□□□□□ -0.14
SCN9A-204ENST00000452182 GTF3C3Q9Y5Q9 886 aa14.2□□□□□ -0.14
SCN9A-204ENST00000452182 COL4A5P29400 1685 aa14.2□□□□□ -0.14
SCN9A-204ENST00000452182 SALL3Q9BXA9 1300 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 IL1R1P14778 569 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 BCAMP50895 628 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 CCDC158Q5M9N0 1113 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 VPS37DQ86XT2 251 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 JDP2Q8WYK2 163 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 LNPKQ9C0E8 428 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 CD209Q9NNX6 404 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 TLR7Q9NYK1 1049 aaKnown RBP14.19□□□□□ -0.14
SCN9A-204ENST00000452182 CHD4Q14839 1912 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 PSME4Q14997 1843 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 SEMA3EO15041 775 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 GORABQ5T7V8 394 aa14.19□□□□□ -0.14
SCN9A-204ENST00000452182 TDRD7Q8NHU6 1098 aaKnown RBP14.19□□□□□ -0.14
SCN9A-204ENST00000452182 GNL3LQ9NVN8 582 aaKnown RBP14.19□□□□□ -0.14
SCN9A-204ENST00000452182 MYH13Q9UKX3 1938 aa14.18□□□□□ -0.14
SCN9A-204ENST00000452182 TTC41PQ6P2S7 1318 aa14.18□□□□□ -0.14
SCN9A-204ENST00000452182 G3V3G9 751 aa14.18□□□□□ -0.14
SCN9A-204ENST00000452182 UQCRFS1P1P0C7P4 283 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms