RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 GREM2Q9H772 168 aa17■□□□□ 0.31
HMGB3-204ENST00000448905 RNF186Q9NXI6 227 aa17■□□□□ 0.31
HMGB3-204ENST00000448905 COL4A1P02462 1669 aa17■□□□□ 0.31
HMGB3-204ENST00000448905 MYO3BQ8WXR4 1341 aa16.99■□□□□ 0.31
HMGB3-204ENST00000448905 NEURL1BA8MQ27 555 aa16.99■□□□□ 0.31
HMGB3-204ENST00000448905 SLC10A3P09131 477 aa16.99■□□□□ 0.31
HMGB3-204ENST00000448905 CWF19L2Q2TBE0 894 aaKnown RBP16.99■□□□□ 0.31
HMGB3-204ENST00000448905 WWC1Q8IX03 1113 aa16.99■□□□□ 0.31
HMGB3-204ENST00000448905 CSRNP1Q96S65 589 aa16.99■□□□□ 0.31
HMGB3-204ENST00000448905 MYH16Q9H6N6 1097 aa16.99■□□□□ 0.31
HMGB3-204ENST00000448905 DUOX1Q9NRD9 1551 aa16.98■□□□□ 0.31
HMGB3-204ENST00000448905 NCBP3Q53F19 620 aaKnown RBP16.98■□□□□ 0.31
HMGB3-204ENST00000448905 UBE3BQ7Z3V4 1068 aa16.98■□□□□ 0.31
HMGB3-204ENST00000448905 HDAC9Q9UKV0 1011 aa16.98■□□□□ 0.31
HMGB3-204ENST00000448905 ASTN2O75129 1339 aaPredicted RBP16.97■□□□□ 0.31
HMGB3-204ENST00000448905 IL16Q14005 1332 aa16.97■□□□□ 0.31
HMGB3-204ENST00000448905 DDX60Q8IY21 1712 aaKnown RBP16.97■□□□□ 0.31
HMGB3-204ENST00000448905 KCNJ4P48050 445 aa16.97■□□□□ 0.31
HMGB3-204ENST00000448905 TTLL12Q14166 644 aaPredicted RBP16.97■□□□□ 0.31
HMGB3-204ENST00000448905 GCKRQ14397 625 aa16.97■□□□□ 0.31
HMGB3-204ENST00000448905 TTLL5Q6EMB2 1281 aa16.97■□□□□ 0.31
HMGB3-204ENST00000448905 ITGA6P23229 1130 aa16.96■□□□□ 0.31
HMGB3-204ENST00000448905 FKBP5Q13451 457 aaPredicted RBP16.96■□□□□ 0.31
HMGB3-204ENST00000448905 DACT2Q5SW24 774 aa16.96■□□□□ 0.31
HMGB3-204ENST00000448905 MED23Q9ULK4 1368 aa16.96■□□□□ 0.31
HMGB3-204ENST00000448905 ZNF804BA4D1E1 1349 aa16.96■□□□□ 0.3
HMGB3-204ENST00000448905 FLIIQ13045 1269 aa16.95■□□□□ 0.3
HMGB3-204ENST00000448905 NBPF9Q3BBW0 867 aa16.95■□□□□ 0.3
HMGB3-204ENST00000448905 LINS1Q8NG48 757 aa16.95■□□□□ 0.3
HMGB3-204ENST00000448905 PLA2G12BQ9BX93 195 aa16.95■□□□□ 0.3
HMGB3-204ENST00000448905 ZNF609O15014 1411 aa16.95■□□□□ 0.3
HMGB3-204ENST00000448905 ANKRD18BA2A2Z9 1011 aa16.94■□□□□ 0.3
HMGB3-204ENST00000448905 WTIPA6NIX2 430 aaPredicted RBP16.94■□□□□ 0.3
HMGB3-204ENST00000448905 UBE2Q2LH0YL09 131 aa16.94■□□□□ 0.3
HMGB3-204ENST00000448905 CSF1RP07333 972 aa16.94■□□□□ 0.3
HMGB3-204ENST00000448905 G2E3Q7L622 706 aa16.94■□□□□ 0.3
HMGB3-204ENST00000448905 DNAAF4Q8WXU2 420 aa16.94■□□□□ 0.3
HMGB3-204ENST00000448905 WNT10BO00744 389 aa16.93■□□□□ 0.3
HMGB3-204ENST00000448905 ARMC9Q7Z3E5 817 aa16.93■□□□□ 0.3
HMGB3-204ENST00000448905 RASAL3Q86YV0 1011 aa16.93■□□□□ 0.3
HMGB3-204ENST00000448905 WDR63Q8IWG1 891 aa16.93■□□□□ 0.3
HMGB3-204ENST00000448905 LRRC37AA6NMS7 1700 aa16.93■□□□□ 0.3
HMGB3-204ENST00000448905 GTF2IP78347 998 aa16.92■□□□□ 0.3
HMGB3-204ENST00000448905 IFIT5Q13325 482 aaKnown RBP16.92■□□□□ 0.3
HMGB3-204ENST00000448905 PRAMEF18Q5VWM3 479 aa16.92■□□□□ 0.3
HMGB3-204ENST00000448905 APOBEC3FQ8IUX4 373 aaKnown RBP16.92■□□□□ 0.3
HMGB3-204ENST00000448905 PKN2Q16513 984 aaKnown RBP16.91■□□□□ 0.3
HMGB3-204ENST00000448905 CTU1Q7Z7A3 348 aaKnown RBP16.91■□□□□ 0.3
HMGB3-204ENST00000448905 KIAA0825Q8IV33 1275 aa16.91■□□□□ 0.3
HMGB3-204ENST00000448905 MXD3Q9BW11 206 aa16.91■□□□□ 0.3
HMGB3-204ENST00000448905 VAMP4O75379 141 aa16.9■□□□□ 0.3
HMGB3-204ENST00000448905 TM4SF4P48230 202 aa16.9■□□□□ 0.3
HMGB3-204ENST00000448905 CHRNDQ07001 517 aa16.9■□□□□ 0.3
HMGB3-204ENST00000448905 SREBF2Q12772 1141 aa16.9■□□□□ 0.3
HMGB3-204ENST00000448905 DLGAP5Q15398 846 aa16.9■□□□□ 0.3
HMGB3-204ENST00000448905 TXNRD3Q86VQ6 643 aa16.9■□□□□ 0.3
HMGB3-204ENST00000448905 MRS2Q9HD23 443 aa16.9■□□□□ 0.3
HMGB3-204ENST00000448905 CD209Q9NNX6 404 aa16.9■□□□□ 0.3
HMGB3-204ENST00000448905 SCAF8Q9UPN6 1271 aaKnown RBP16.9■□□□□ 0.3
HMGB3-204ENST00000448905 CHMP3Q9Y3E7 222 aa16.9■□□□□ 0.3
HMGB3-204ENST00000448905 SCN9AQ15858 1988 aa16.89■□□□□ 0.3
HMGB3-204ENST00000448905 ANP32CO43423 234 aa16.89■□□□□ 0.29
HMGB3-204ENST00000448905 MYO1BO43795 1136 aa16.89■□□□□ 0.29
HMGB3-204ENST00000448905 SLC34A2O95436 690 aa16.89■□□□□ 0.29
HMGB3-204ENST00000448905 CCDC57Q2TAC2 916 aa16.89■□□□□ 0.29
HMGB3-204ENST00000448905 MOB2Q70IA6 237 aa16.89■□□□□ 0.29
HMGB3-204ENST00000448905 SALL2Q9Y467 1007 aaPredicted RBP16.89■□□□□ 0.29
HMGB3-204ENST00000448905 SASH1O94885 1247 aa16.88■□□□□ 0.29
HMGB3-204ENST00000448905 CASP7P55210 303 aa16.88■□□□□ 0.29
HMGB3-204ENST00000448905 INHBEP58166 350 aa16.88■□□□□ 0.29
HMGB3-204ENST00000448905 CCDC184Q52MB2 194 aa16.88■□□□□ 0.29
HMGB3-204ENST00000448905 TAF7LQ5H9L4 462 aa16.88■□□□□ 0.29
HMGB3-204ENST00000448905 ZNF804AQ7Z570 1209 aa16.88■□□□□ 0.29
HMGB3-204ENST00000448905 PPP1R12BO60237 982 aaPredicted RBP16.87■□□□□ 0.29
HMGB3-204ENST00000448905 TBC1D8O95759 1140 aa16.87■□□□□ 0.29
HMGB3-204ENST00000448905 PRKG1Q13976 671 aa16.87■□□□□ 0.29
HMGB3-204ENST00000448905 C15orf52Q6ZUT6 534 aaKnown RBP16.87■□□□□ 0.29
HMGB3-204ENST00000448905 SLC10A4Q96EP9 437 aa16.87■□□□□ 0.29
HMGB3-204ENST00000448905 DEFB129Q9H1M3 183 aa16.87■□□□□ 0.29
HMGB3-204ENST00000448905 TAF5LO75529 589 aa16.86■□□□□ 0.29
HMGB3-204ENST00000448905 ALDH1A1P00352 501 aa16.86■□□□□ 0.29
HMGB3-204ENST00000448905 EXOSC9Q06265 439 aaKnown RBP16.86■□□□□ 0.29
HMGB3-204ENST00000448905 SUPT20HL1Q3ZLR7 823 aa16.86■□□□□ 0.29
HMGB3-204ENST00000448905 LDHAL6AQ6ZMR3 332 aa16.86■□□□□ 0.29
HMGB3-204ENST00000448905 HELBQ8NG08 1087 aaPredicted RBP16.86■□□□□ 0.29
HMGB3-204ENST00000448905 C9orf78Q9NZ63 289 aaPredicted RBP16.86■□□□□ 0.29
HMGB3-204ENST00000448905 PPP2R3BQ9Y5P8 575 aa16.86■□□□□ 0.29
HMGB3-204ENST00000448905 FANCIQ9NVI1 1328 aa16.86■□□□□ 0.29
HMGB3-204ENST00000448905 UNCXA6NJT0 531 aa16.85■□□□□ 0.29
HMGB3-204ENST00000448905 FKBP1AP62942 108 aaKnown RBP16.85■□□□□ 0.29
HMGB3-204ENST00000448905 PTPN12Q05209 780 aaKnown RBP16.85■□□□□ 0.29
HMGB3-204ENST00000448905 NOM1Q5C9Z4 860 aaKnown RBP16.85■□□□□ 0.29
HMGB3-204ENST00000448905 BEND3Q5T5X7 828 aa16.85■□□□□ 0.29
HMGB3-204ENST00000448905 LMBR1LQ6UX01 489 aa16.85■□□□□ 0.29
HMGB3-204ENST00000448905 MTMR14Q8NCE2 650 aa16.85■□□□□ 0.29
HMGB3-204ENST00000448905 ZNF296Q8WUU4 475 aaPredicted RBP16.85■□□□□ 0.29
HMGB3-204ENST00000448905 CNNM1Q9NRU3 951 aa16.85■□□□□ 0.29
HMGB3-204ENST00000448905 ANGEL1Q9UNK9 670 aaKnown RBP16.85■□□□□ 0.29
HMGB3-204ENST00000448905 GPR25O00155 361 aa16.84■□□□□ 0.29
HMGB3-204ENST00000448905 PLIN1O60240 522 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms