RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 UBE4AQ14139 1066 aa20.4■□□□□ 0.86
SF3A1-204ENST00000447376 PUS3Q9BZE2 481 aaKnown RBP20.4■□□□□ 0.86
SF3A1-204ENST00000447376 CNOT7Q9UIV1 285 aaKnown RBP20.4■□□□□ 0.86
SF3A1-204ENST00000447376 VIL1P09327 827 aaKnown RBP20.39■□□□□ 0.85
SF3A1-204ENST00000447376 C15orf52Q6ZUT6 534 aaKnown RBP20.39■□□□□ 0.85
SF3A1-204ENST00000447376 MICALL2Q8IY33 904 aa20.39■□□□□ 0.85
SF3A1-204ENST00000447376 AGBL3Q8NEM8 1001 aa20.39■□□□□ 0.85
SF3A1-204ENST00000447376 FBXO3Q9UK99 471 aa20.39■□□□□ 0.85
SF3A1-204ENST00000447376 TNNQ9UQP3 1299 aa20.39■□□□□ 0.85
SF3A1-204ENST00000447376 MYO3BQ8WXR4 1341 aa20.38■□□□□ 0.85
SF3A1-204ENST00000447376 RSBN1LQ6PCB5 846 aaPredicted RBP20.38■□□□□ 0.85
SF3A1-204ENST00000447376 VPS37DQ86XT2 251 aa20.38■□□□□ 0.85
SF3A1-204ENST00000447376 KLHDC4Q8TBB5 520 aa20.38■□□□□ 0.85
SF3A1-204ENST00000447376 ZBTB12Q9Y330 459 aaPredicted RBP20.38■□□□□ 0.85
SF3A1-204ENST00000447376 RIPOR2Q9Y4F9 1068 aa20.38■□□□□ 0.85
SF3A1-204ENST00000447376 WTIPA6NIX2 430 aaPredicted RBP20.37■□□□□ 0.85
SF3A1-204ENST00000447376 EYA2O00167 538 aa20.37■□□□□ 0.85
SF3A1-204ENST00000447376 SRGAP3O43295 1099 aa20.37■□□□□ 0.85
SF3A1-204ENST00000447376 POTEIP0CG38 1075 aa20.37■□□□□ 0.85
SF3A1-204ENST00000447376 POTEJP0CG39 1038 aa20.37■□□□□ 0.85
SF3A1-204ENST00000447376 LRRC24Q50LG9 513 aa20.37■□□□□ 0.85
SF3A1-204ENST00000447376 STRIP1Q5VSL9 837 aa20.37■□□□□ 0.85
SF3A1-204ENST00000447376 KCNQ5Q9NR82 932 aa20.37■□□□□ 0.85
SF3A1-204ENST00000447376 A0A1B0GUL6 1792 aa20.36■□□□□ 0.85
SF3A1-204ENST00000447376 PDE8BO95263 885 aa20.36■□□□□ 0.85
SF3A1-204ENST00000447376 PTPN12Q05209 780 aaKnown RBP20.36■□□□□ 0.85
SF3A1-204ENST00000447376 CAVIN4Q5BKX8 364 aa20.36■□□□□ 0.85
SF3A1-204ENST00000447376 TXNRD3Q86VQ6 643 aa20.36■□□□□ 0.85
SF3A1-204ENST00000447376 SIL1Q9H173 461 aa20.36■□□□□ 0.85
SF3A1-204ENST00000447376 CHMP4BQ9H444 224 aaKnown RBP20.36■□□□□ 0.85
SF3A1-204ENST00000447376 CD209Q9NNX6 404 aa20.36■□□□□ 0.85
SF3A1-204ENST00000447376 SNAP23O00161 211 aa20.35■□□□□ 0.85
SF3A1-204ENST00000447376 CIAO1O76071 339 aa20.35■□□□□ 0.85
SF3A1-204ENST00000447376 IFIT1P09914 478 aaKnown RBP20.35■□□□□ 0.85
SF3A1-204ENST00000447376 KLRK1P26718 216 aa20.35■□□□□ 0.85
SF3A1-204ENST00000447376 PUM3Q15397 648 aaKnown RBP20.35■□□□□ 0.85
SF3A1-204ENST00000447376 TTLL5Q6EMB2 1281 aa20.35■□□□□ 0.85
SF3A1-204ENST00000447376 OGFOD1Q8N543 542 aa20.35■□□□□ 0.85
SF3A1-204ENST00000447376 CEP126Q9P2H0 1117 aa20.35■□□□□ 0.85
SF3A1-204ENST00000447376 FRAT2O75474 233 aaPredicted RBP20.34■□□□□ 0.85
SF3A1-204ENST00000447376 IL15P40933 162 aaPredicted RBP20.34■□□□□ 0.85
SF3A1-204ENST00000447376 RFX5P48382 616 aaPredicted RBP20.34■□□□□ 0.85
SF3A1-204ENST00000447376 MMP14P50281 582 aa20.34■□□□□ 0.85
SF3A1-204ENST00000447376 PSME4Q14997 1843 aa20.33■□□□□ 0.85
SF3A1-204ENST00000447376 USP17L8P0C7I0 530 aa20.33■□□□□ 0.85
SF3A1-204ENST00000447376 SLC5A1P13866 664 aa20.33■□□□□ 0.85
SF3A1-204ENST00000447376 HIBADHP31937 336 aaKnown RBP20.33■□□□□ 0.85
SF3A1-204ENST00000447376 GTF2IP78347 998 aa20.33■□□□□ 0.85
SF3A1-204ENST00000447376 MTX1Q13505 466 aa20.33■□□□□ 0.85
SF3A1-204ENST00000447376 CNTROBQ8N137 903 aa20.33■□□□□ 0.85
SF3A1-204ENST00000447376 ZC3H15Q8WU90 426 aaKnown RBP20.33■□□□□ 0.85
SF3A1-204ENST00000447376 COPRSQ9NQ92 184 aa20.33■□□□□ 0.85
SF3A1-204ENST00000447376 SCN9AQ15858 1988 aa20.33■□□□□ 0.84
SF3A1-204ENST00000447376 ZNF609O15014 1411 aa20.33■□□□□ 0.84
SF3A1-204ENST00000447376 MAP1SQ66K74 1059 aaPredicted RBP20.32■□□□□ 0.84
SF3A1-204ENST00000447376 HDAC9Q9UKV0 1011 aa20.32■□□□□ 0.84
SF3A1-204ENST00000447376 RLBP1P12271 317 aa20.31■□□□□ 0.84
SF3A1-204ENST00000447376 IL1R1P14778 569 aa20.31■□□□□ 0.84
SF3A1-204ENST00000447376 PDE3AQ14432 1141 aa20.31■□□□□ 0.84
SF3A1-204ENST00000447376 KIF4BQ2VIQ3 1234 aa20.31■□□□□ 0.84
SF3A1-204ENST00000447376 TBC1D10BQ4KMP7 808 aaPredicted RBP20.31■□□□□ 0.84
SF3A1-204ENST00000447376 DACT2Q5SW24 774 aa20.31■□□□□ 0.84
SF3A1-204ENST00000447376 RBM26Q5T8P6 1007 aaKnown RBP20.31■□□□□ 0.84
SF3A1-204ENST00000447376 PANK1Q8TE04 598 aa20.31■□□□□ 0.84
SF3A1-204ENST00000447376 DDX19BQ9UMR2 479 aa20.31■□□□□ 0.84
SF3A1-204ENST00000447376 ADAMTSL1Q8N6G6 1762 aa20.31■□□□□ 0.84
SF3A1-204ENST00000447376 GYG1P46976 350 aa20.3■□□□□ 0.84
SF3A1-204ENST00000447376 SAMD7Q7Z3H4 446 aa20.3■□□□□ 0.84
SF3A1-204ENST00000447376 VGLL2Q8N8G2 317 aa20.3■□□□□ 0.84
SF3A1-204ENST00000447376 LPIN2Q92539 896 aa20.3■□□□□ 0.84
SF3A1-204ENST00000447376 PA2G4Q9UQ80 394 aaKnown RBP20.3■□□□□ 0.84
SF3A1-204ENST00000447376 IRS2Q9Y4H2 1338 aa20.29■□□□□ 0.84
SF3A1-204ENST00000447376 ZBTB7BO15156 539 aaPredicted RBP20.29■□□□□ 0.84
SF3A1-204ENST00000447376 SASH1O94885 1247 aa20.29■□□□□ 0.84
SF3A1-204ENST00000447376 G3BP1Q13283 466 aaKnown RBP eCLIP20.29■□□□□ 0.845e-7■■□□□ 11.6
SF3A1-204ENST00000447376 ATP2B3Q16720 1220 aa20.29■□□□□ 0.84
SF3A1-204ENST00000447376 ATG9AQ7Z3C6 839 aa20.29■□□□□ 0.84
SF3A1-204ENST00000447376 TRPM4Q8TD43 1214 aa20.29■□□□□ 0.84
SF3A1-204ENST00000447376 DCPSQ96C86 337 aaKnown RBP20.29■□□□□ 0.84
SF3A1-204ENST00000447376 AKAP2Q9Y2D5 859 aa20.29■□□□□ 0.84
SF3A1-204ENST00000447376 SHTN1A0MZ66 631 aa20.28■□□□□ 0.84
SF3A1-204ENST00000447376 OS9Q13438 667 aaPredicted RBP20.28■□□□□ 0.84
SF3A1-204ENST00000447376 MVPQ14764 893 aaKnown RBP20.28■□□□□ 0.84
SF3A1-204ENST00000447376 FAM84BQ96KN1 310 aaPredicted RBP20.28■□□□□ 0.84
SF3A1-204ENST00000447376 GMLQ99445 158 aa20.28■□□□□ 0.84
SF3A1-204ENST00000447376 MYOZ2Q9NPC6 264 aa20.28■□□□□ 0.84
SF3A1-204ENST00000447376 ZNF280AP59817 542 aaPredicted RBP20.27■□□□□ 0.84
SF3A1-204ENST00000447376 FKBP1AP62942 108 aaKnown RBP20.27■□□□□ 0.84
SF3A1-204ENST00000447376 CDC37L1Q7L3B6 337 aa20.27■□□□□ 0.84
SF3A1-204ENST00000447376 GNL3LQ9NVN8 582 aaKnown RBP20.27■□□□□ 0.84
SF3A1-204ENST00000447376 ITGBL1O95965 494 aaPredicted RBP20.26■□□□□ 0.83
SF3A1-204ENST00000447376 ATP8B2P98198 1209 aa20.26■□□□□ 0.83
SF3A1-204ENST00000447376 KIAA0825Q8IV33 1275 aa20.26■□□□□ 0.83
SF3A1-204ENST00000447376 TDRD7Q8NHU6 1098 aaKnown RBP20.26■□□□□ 0.83
SF3A1-204ENST00000447376 C1orf115Q9H7X2 142 aa20.26■□□□□ 0.83
SF3A1-204ENST00000447376 CREBZFQ9NS37 354 aa20.26■□□□□ 0.83
SF3A1-204ENST00000447376 PGAP2Q9UHJ9 254 aa20.26■□□□□ 0.83
SF3A1-204ENST00000447376 COG6Q9Y2V7 657 aa20.26■□□□□ 0.83
SF3A1-204ENST00000447376 PASKQ96RG2 1323 aa20.26■□□□□ 0.83
SF3A1-204ENST00000447376 PNMA6EA0A0J9YXQ4 647 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms