RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 BCL11AQ9H165 835 aa19.41■□□□□ 0.7
USP40-206ENST00000443711 VPS33BQ9H267 617 aa19.41■□□□□ 0.7
USP40-206ENST00000443711 TAOK3Q9H2K8 898 aa19.41■□□□□ 0.7
USP40-206ENST00000443711 LTBP3Q9NS15 1303 aa19.41■□□□□ 0.7
USP40-206ENST00000443711 DUOX1Q9NRD9 1551 aa19.4■□□□□ 0.7
USP40-206ENST00000443711 NFKBIEO00221 500 aa19.4■□□□□ 0.7
USP40-206ENST00000443711 WASHC4Q2M389 1173 aa19.4■□□□□ 0.7
USP40-206ENST00000443711 EAF2Q96CJ1 260 aaPredicted RBP19.4■□□□□ 0.7
USP40-206ENST00000443711 ZC3H12CQ9C0D7 883 aaKnown RBP19.4■□□□□ 0.7
USP40-206ENST00000443711 ZNF609O15014 1411 aa19.4■□□□□ 0.7
USP40-206ENST00000443711 DCAF8L1A6NGE4 600 aa19.39■□□□□ 0.69
USP40-206ENST00000443711 IFIT2P09913 472 aaKnown RBP19.39■□□□□ 0.69
USP40-206ENST00000443711 CHD1LQ86WJ1 897 aa19.39■□□□□ 0.69
USP40-206ENST00000443711 GPR101Q96P66 508 aaPredicted RBP19.39■□□□□ 0.69
USP40-206ENST00000443711 MED23Q9ULK4 1368 aa19.39■□□□□ 0.69
USP40-206ENST00000443711 RIMBP2O15034 1052 aa19.38■□□□□ 0.69
USP40-206ENST00000443711 CAVIN4Q5BKX8 364 aa19.38■□□□□ 0.69
USP40-206ENST00000443711 GORABQ5T7V8 394 aa19.38■□□□□ 0.69
USP40-206ENST00000443711 ARAP2Q8WZ64 1704 aa19.38■□□□□ 0.69
USP40-206ENST00000443711 XAGE2Q96GT9 111 aa19.38■□□□□ 0.69
USP40-206ENST00000443711 LNPKQ9C0E8 428 aa19.38■□□□□ 0.69
USP40-206ENST00000443711 CCDC8Q9H0W5 538 aaPredicted RBP19.38■□□□□ 0.69
USP40-206ENST00000443711 CCDC88AQ3V6T2 1871 aa19.37■□□□□ 0.69
USP40-206ENST00000443711 IRS2Q9Y4H2 1338 aa19.37■□□□□ 0.69
USP40-206ENST00000443711 KIAA2012Q0VF49 1180 aa19.37■□□□□ 0.69
USP40-206ENST00000443711 ZNF277Q9NRM2 450 aaPredicted RBP19.37■□□□□ 0.69
USP40-206ENST00000443711 G3V3G9 751 aa19.36■□□□□ 0.69
USP40-206ENST00000443711 PPIP5K2O43314 1243 aa19.36■□□□□ 0.69
USP40-206ENST00000443711 KLRK1P26718 216 aa19.36■□□□□ 0.69
USP40-206ENST00000443711 ADORA1P30542 326 aa19.36■□□□□ 0.69
USP40-206ENST00000443711 IARSP41252 1262 aaKnown RBP19.36■□□□□ 0.69
USP40-206ENST00000443711 RASSF7Q02833 373 aa19.36■□□□□ 0.69
USP40-206ENST00000443711 DCAF8Q5TAQ9 597 aa19.36■□□□□ 0.69
USP40-206ENST00000443711 ZNF804AQ7Z570 1209 aa19.36■□□□□ 0.69
USP40-206ENST00000443711 TXNRD3Q86VQ6 643 aa19.36■□□□□ 0.69
USP40-206ENST00000443711 FAM84BQ96KN1 310 aaPredicted RBP19.36■□□□□ 0.69
USP40-206ENST00000443711 DBNDD2Q9BQY9 259 aa19.36■□□□□ 0.69
USP40-206ENST00000443711 DBNLQ9UJU6 430 aaKnown RBP19.36■□□□□ 0.69
USP40-206ENST00000443711 HIBADHP31937 336 aaKnown RBP19.35■□□□□ 0.69
USP40-206ENST00000443711 GYG1P46976 350 aa19.35■□□□□ 0.69
USP40-206ENST00000443711 AOC3Q16853 763 aa19.35■□□□□ 0.69
USP40-206ENST00000443711 CCDC158Q5M9N0 1113 aa19.35■□□□□ 0.69
USP40-206ENST00000443711 FBXO33Q7Z6M2 555 aa19.35■□□□□ 0.69
USP40-206ENST00000443711 VPS37DQ86XT2 251 aa19.35■□□□□ 0.69
USP40-206ENST00000443711 C16orf71Q8IYS4 520 aaPredicted RBP19.35■□□□□ 0.69
USP40-206ENST00000443711 LARGE2Q8N3Y3 721 aa19.35■□□□□ 0.69
USP40-206ENST00000443711 CHD4Q14839 1912 aa19.35■□□□□ 0.69
USP40-206ENST00000443711 SBF1O95248 1867 aa19.35■□□□□ 0.69
USP40-206ENST00000443711 BCAMP50895 628 aa19.34■□□□□ 0.69
USP40-206ENST00000443711 COA1Q9GZY4 146 aa19.34■□□□□ 0.69
USP40-206ENST00000443711 GNL3LQ9NVN8 582 aaKnown RBP19.34■□□□□ 0.69
USP40-206ENST00000443711 TLR7Q9NYK1 1049 aaKnown RBP19.34■□□□□ 0.69
USP40-206ENST00000443711 LMNB1P20700 586 aa19.33■□□□□ 0.68
USP40-206ENST00000443711 CCDC102BQ68D86 513 aa19.33■□□□□ 0.68
USP40-206ENST00000443711 GPATCH3Q96I76 525 aa19.33■□□□□ 0.68
USP40-206ENST00000443711 DICER1Q9UPY3 1922 aaKnown RBP19.32■□□□□ 0.68
USP40-206ENST00000443711 UQCRFS1P1P0C7P4 283 aa19.32■□□□□ 0.68
USP40-206ENST00000443711 PHKA1P46020 1223 aa19.32■□□□□ 0.68
USP40-206ENST00000443711 DOK7Q18PE1 504 aa19.32■□□□□ 0.68
USP40-206ENST00000443711 TTC39AQ5SRH9 613 aa19.32■□□□□ 0.68
USP40-206ENST00000443711 JDP2Q8WYK2 163 aa19.32■□□□□ 0.68
USP40-206ENST00000443711 CD209Q9NNX6 404 aa19.32■□□□□ 0.68
USP40-206ENST00000443711 SRCAPQ6ZRS2 3230 aa19.31■□□□□ 0.68
USP40-206ENST00000443711 PODNQ7Z5L7 613 aa19.31■□□□□ 0.68
USP40-206ENST00000443711 NIM1KQ8IY84 436 aa19.31■□□□□ 0.68
USP40-206ENST00000443711 ECHDC1Q9NTX5 307 aa19.31■□□□□ 0.68
USP40-206ENST00000443711 SEMA3EO15041 775 aa19.3■□□□□ 0.68
USP40-206ENST00000443711 ECE2O60344 883 aa19.3■□□□□ 0.68
USP40-206ENST00000443711 FRAT2O75474 233 aaPredicted RBP19.3■□□□□ 0.68
USP40-206ENST00000443711 IL1R1P14778 569 aa19.3■□□□□ 0.68
USP40-206ENST00000443711 MX1P20591 662 aa19.3■□□□□ 0.68
USP40-206ENST00000443711 PRELPP51888 382 aa19.3■□□□□ 0.68
USP40-206ENST00000443711 TDRD7Q8NHU6 1098 aaKnown RBP19.3■□□□□ 0.68
USP40-206ENST00000443711 OTUD7AQ8TE49 926 aaPredicted RBP19.3■□□□□ 0.68
USP40-206ENST00000443711 ZNF512BQ96KM6 892 aaPredicted RBP19.3■□□□□ 0.68
USP40-206ENST00000443711 DBNDD1Q9H9R9 158 aa19.3■□□□□ 0.68
USP40-206ENST00000443711 TTC41PQ6P2S7 1318 aa19.29■□□□□ 0.68
USP40-206ENST00000443711 SALL3Q9BXA9 1300 aa19.29■□□□□ 0.68
USP40-206ENST00000443711 ZBTB22O15209 634 aa19.29■□□□□ 0.68
USP40-206ENST00000443711 PDE4AP27815 886 aa19.29■□□□□ 0.68
USP40-206ENST00000443711 ARID4AP29374 1257 aaPredicted RBP19.29■□□□□ 0.68
USP40-206ENST00000443711 STAP2Q9UGK3 403 aa19.29■□□□□ 0.68
USP40-206ENST00000443711 ZNRF3Q9ULT6 936 aa19.29■□□□□ 0.68
USP40-206ENST00000443711 MYH13Q9UKX3 1938 aa19.29■□□□□ 0.68
USP40-206ENST00000443711 ERC2O15083 957 aa19.28■□□□□ 0.68
USP40-206ENST00000443711 ATP5JP18859 108 aa19.28■□□□□ 0.68
USP40-206ENST00000443711 PDE1AP54750 535 aa19.28■□□□□ 0.68
USP40-206ENST00000443711 PLEKHM2Q8IWE5 1019 aa19.28■□□□□ 0.68
USP40-206ENST00000443711 RNF181Q9P0P0 153 aa19.28■□□□□ 0.68
USP40-206ENST00000443711 DENND2AQ9ULE3 1009 aa19.28■□□□□ 0.68
USP40-206ENST00000443711 IQSEC3Q9UPP2 1182 aaPredicted RBP19.28■□□□□ 0.68
USP40-206ENST00000443711 C9orf131Q5VYM1 1079 aa19.27■□□□□ 0.68
USP40-206ENST00000443711 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.27■□□□□ 0.68
USP40-206ENST00000443711 COL4A5P29400 1685 aa19.27■□□□□ 0.67
USP40-206ENST00000443711 AOX1Q06278 1338 aa19.26■□□□□ 0.67
USP40-206ENST00000443711 AKAP11Q9UKA4 1901 aa19.26■□□□□ 0.67
USP40-206ENST00000443711 OSBPL3Q9H4L5 887 aa19.26■□□□□ 0.67
USP40-206ENST00000443711 GLRX3O76003 335 aaKnown RBP19.25■□□□□ 0.67
USP40-206ENST00000443711 RASGRF1Q13972 1273 aa19.25■□□□□ 0.67
USP40-206ENST00000443711 SPATA5Q8NB90 893 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms