RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 DCAF16Q9NXF7 216 aa12.44□□□□□ -0.42
SYNE2-206ENST00000441438 LMOD1P29536 600 aaPredicted RBP12.43□□□□□ -0.42
SYNE2-206ENST00000441438 NFX1Q12986 1120 aaKnown RBP12.43□□□□□ -0.42
SYNE2-206ENST00000441438 TRIM29Q14134 588 aa12.43□□□□□ -0.42
SYNE2-206ENST00000441438 PPP4R4Q6NUP7 873 aa12.43□□□□□ -0.42
SYNE2-206ENST00000441438 PAWRQ96IZ0 340 aaKnown RBP12.43□□□□□ -0.42
SYNE2-206ENST00000441438 NELL2Q99435 816 aa12.43□□□□□ -0.42
SYNE2-206ENST00000441438 hCG_1984214I3L0E3 225 aa12.43□□□□□ -0.42
SYNE2-206ENST00000441438 OATP04181 439 aa12.43□□□□□ -0.42
SYNE2-206ENST00000441438 TBC1D31Q96DN5 1066 aa12.43□□□□□ -0.42
SYNE2-206ENST00000441438 ACBD3Q9H3P7 528 aa12.43□□□□□ -0.42
SYNE2-206ENST00000441438 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.43□□□□□ -0.42
SYNE2-206ENST00000441438 SWT1Q5T5J6 900 aaKnown RBP12.43□□□□□ -0.42
SYNE2-206ENST00000441438 PDXDC2PQ6P474 469 aa12.43□□□□□ -0.42
SYNE2-206ENST00000441438 SNX32Q86XE0 403 aa12.43□□□□□ -0.42
SYNE2-206ENST00000441438 TRIM6Q9C030 488 aaPredicted RBP12.43□□□□□ -0.42
SYNE2-206ENST00000441438 KANK1Q14678 1352 aa12.43□□□□□ -0.42
SYNE2-206ENST00000441438 NRXN1Q9ULB1 1477 aa12.42□□□□□ -0.42
SYNE2-206ENST00000441438 SLC43A3Q8NBI5 491 aa12.42□□□□□ -0.42
SYNE2-206ENST00000441438 ZNF496Q96IT1 587 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-206ENST00000441438 PNNQ9H307 717 aaKnown RBP12.42□□□□□ -0.42
SYNE2-206ENST00000441438 OAS2P29728 719 aaKnown RBP12.42□□□□□ -0.42
SYNE2-206ENST00000441438 GEMIN4P57678 1058 aaKnown RBP12.42□□□□□ -0.42
SYNE2-206ENST00000441438 AGAP9Q5VTM2 703 aa12.42□□□□□ -0.42
SYNE2-206ENST00000441438 LRCH2Q5VUJ6 765 aa12.42□□□□□ -0.42
SYNE2-206ENST00000441438 TEKT1Q969V4 418 aa12.42□□□□□ -0.42
SYNE2-206ENST00000441438 SERINC2Q96SA4 455 aa12.42□□□□□ -0.42
SYNE2-206ENST00000441438 HSPA5P11021 654 aaKnown RBP12.41□□□□□ -0.42
SYNE2-206ENST00000441438 MAGEA8P43361 318 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 C16orf54Q6UWD8 224 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 ARL6IP6Q8N6S5 226 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 ESF1Q9H501 851 aaKnown RBP12.41□□□□□ -0.42
SYNE2-206ENST00000441438 LGR6Q9HBX8 967 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 PPP2R3BQ9Y5P8 575 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 CPS1P31327 1500 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 SHTN1A0MZ66 631 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 RPL17P18621 184 aaKnown RBP12.41□□□□□ -0.42
SYNE2-206ENST00000441438 MIGA1Q8NAN2 632 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 TBK1Q9UHD2 729 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 MYOM2P54296 1465 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 PALM3A6NDB9 673 aaPredicted RBP12.41□□□□□ -0.42
SYNE2-206ENST00000441438 LRRC41Q15345 812 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 TSPYL1Q9H0U9 437 aa12.41□□□□□ -0.42
SYNE2-206ENST00000441438 DDX49Q9Y6V7 483 aaKnown RBP12.41□□□□□ -0.42
SYNE2-206ENST00000441438 CCP110O43303 1012 aa12.4□□□□□ -0.42
SYNE2-206ENST00000441438 BBOX1O75936 387 aa12.4□□□□□ -0.42
SYNE2-206ENST00000441438 HNRNPMP52272 730 aaKnown RBP eCLIP12.4□□□□□ -0.42
SYNE2-206ENST00000441438 L3MBTL2Q969R5 705 aa12.4□□□□□ -0.42
SYNE2-206ENST00000441438 IQGAP1P46940 1657 aa12.4□□□□□ -0.42
SYNE2-206ENST00000441438 ZBED9Q6R2W3 1325 aa12.4□□□□□ -0.42
SYNE2-206ENST00000441438 SLC27A2O14975 620 aa12.4□□□□□ -0.42
SYNE2-206ENST00000441438 HOXD10P28358 340 aa12.4□□□□□ -0.42
SYNE2-206ENST00000441438 MRPL58Q14197 206 aaKnown RBP12.4□□□□□ -0.42
SYNE2-206ENST00000441438 COBLL1Q53SF7 1204 aa12.4□□□□□ -0.42
SYNE2-206ENST00000441438 NFXL1Q6ZNB6 911 aa12.4□□□□□ -0.42
SYNE2-206ENST00000441438 MPHOSPH9Q99550 1183 aa12.4□□□□□ -0.42
SYNE2-206ENST00000441438 SETSIPP0DME0 302 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 RNPC3Q96LT9 517 aaKnown RBP12.39□□□□□ -0.43
SYNE2-206ENST00000441438 POLR3EQ9NVU0 708 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 N6AMT1Q9Y5N5 214 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 KRT18P05783 430 aaKnown RBP12.39□□□□□ -0.43
SYNE2-206ENST00000441438 CCDC159P0C7I6 412 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 TMED1Q13445 227 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 TAX1BP1Q86VP1 789 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 GABPB2Q8TAK5 448 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-206ENST00000441438 C17orf50Q8WW18 174 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 BIN2Q9UBW5 565 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-206ENST00000441438 XPO7Q9UIA9 1087 aaKnown RBP12.39□□□□□ -0.43
SYNE2-206ENST00000441438 CFAP65Q6ZU64 1925 aaKnown RBP12.39□□□□□ -0.43
SYNE2-206ENST00000441438 KIF3BO15066 747 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 FIBPO43427 364 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 DIAPH1O60610 1272 aaKnown RBP12.39□□□□□ -0.43
SYNE2-206ENST00000441438 MYL3P08590 195 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 TSPY4P0CV99 314 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 TSPY10P0CW01 314 aa12.39□□□□□ -0.43
SYNE2-206ENST00000441438 TDRD7Q8NHU6 1098 aaKnown RBP12.39□□□□□ -0.43
SYNE2-206ENST00000441438 TYW1Q9NV66 732 aaKnown RBP12.39□□□□□ -0.43
SYNE2-206ENST00000441438 ENPP3O14638 875 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 CAND2O75155 1236 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 SLC7A5Q01650 507 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 MAP2K5Q13163 448 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 MNS1Q8NEH6 495 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 FLCNQ8NFG4 579 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 MED4Q9NPJ6 270 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 RIC8AQ9NPQ8 531 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 PRKAB1Q9Y478 270 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 PIK3R4Q99570 1358 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 FRMD6Q96NE9 622 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 TEX13AQ9BXU3 409 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-206ENST00000441438 NLRP2Q9NX02 1062 aa12.38□□□□□ -0.43
SYNE2-206ENST00000441438 ORC4O43929 436 aa12.37□□□□□ -0.43
SYNE2-206ENST00000441438 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.37□□□□□ -0.43
SYNE2-206ENST00000441438 ACBD5Q5T8D3 534 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-206ENST00000441438 ZNF449Q6P9G9 518 aa12.37□□□□□ -0.43
SYNE2-206ENST00000441438 MCM10Q7L590 875 aa12.37□□□□□ -0.43
SYNE2-206ENST00000441438 BRSK2Q8IWQ3 736 aa12.37□□□□□ -0.43
SYNE2-206ENST00000441438 FBXO41Q8TF61 875 aa12.37□□□□□ -0.43
SYNE2-206ENST00000441438 IPO9Q96P70 1041 aaKnown RBP12.37□□□□□ -0.43
SYNE2-206ENST00000441438 GMLQ99445 158 aa12.37□□□□□ -0.43
SYNE2-206ENST00000441438 FEZ1Q99689 392 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms