RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 METTL24Q5JXM2 366 aa13.08□□□□□ -0.32
MCF2L-216ENST00000439475 STRIP1Q5VSL9 837 aa13.08□□□□□ -0.32
MCF2L-216ENST00000439475 TTLL5Q6EMB2 1281 aa13.08□□□□□ -0.32
MCF2L-216ENST00000439475 ZNF804AQ7Z570 1209 aa13.08□□□□□ -0.32
MCF2L-216ENST00000439475 ANKRD44Q8N8A2 993 aa13.08□□□□□ -0.32
MCF2L-216ENST00000439475 WTIPA6NIX2 430 aaPredicted RBP13.07□□□□□ -0.32
MCF2L-216ENST00000439475 ITGBL1O95965 494 aaPredicted RBP13.07□□□□□ -0.32
MCF2L-216ENST00000439475 MS4A1P11836 297 aa13.07□□□□□ -0.32
MCF2L-216ENST00000439475 TRIM27P14373 513 aa13.07□□□□□ -0.32
MCF2L-216ENST00000439475 RBM26Q5T8P6 1007 aaKnown RBP13.07□□□□□ -0.32
MCF2L-216ENST00000439475 TXNRD3Q86VQ6 643 aa13.07□□□□□ -0.32
MCF2L-216ENST00000439475 FTSJ3Q8IY81 847 aaKnown RBP13.07□□□□□ -0.32
MCF2L-216ENST00000439475 OGFOD1Q8N543 542 aa13.07□□□□□ -0.32
MCF2L-216ENST00000439475 CD209Q9NNX6 404 aa13.07□□□□□ -0.32
MCF2L-216ENST00000439475 FBXO3Q9UK99 471 aa13.07□□□□□ -0.32
MCF2L-216ENST00000439475 HDAC9Q9UKV0 1011 aa13.07□□□□□ -0.32
MCF2L-216ENST00000439475 RIPOR2Q9Y4F9 1068 aa13.07□□□□□ -0.32
MCF2L-216ENST00000439475 TMEM88BA6NKF7 163 aa13.06□□□□□ -0.32
MCF2L-216ENST00000439475 USP17L8P0C7I0 530 aa13.06□□□□□ -0.32
MCF2L-216ENST00000439475 CDC37L1Q7L3B6 337 aa13.06□□□□□ -0.32
MCF2L-216ENST00000439475 SAMD7Q7Z3H4 446 aa13.06□□□□□ -0.32
MCF2L-216ENST00000439475 CLUAP1Q96AJ1 413 aa13.06□□□□□ -0.32
MCF2L-216ENST00000439475 PUS3Q9BZE2 481 aaKnown RBP13.06□□□□□ -0.32
MCF2L-216ENST00000439475 CREBZFQ9NS37 354 aa13.06□□□□□ -0.32
MCF2L-216ENST00000439475 PGAP2Q9UHJ9 254 aa13.06□□□□□ -0.32
MCF2L-216ENST00000439475 EYA2O00167 538 aa13.05□□□□□ -0.32
MCF2L-216ENST00000439475 PDE8BO95263 885 aa13.05□□□□□ -0.32
MCF2L-216ENST00000439475 GTF2IP78347 998 aa13.05□□□□□ -0.32
MCF2L-216ENST00000439475 TBC1D10BQ4KMP7 808 aaPredicted RBP13.05□□□□□ -0.32
MCF2L-216ENST00000439475 CAVIN4Q5BKX8 364 aa13.05□□□□□ -0.32
MCF2L-216ENST00000439475 VPS37DQ86XT2 251 aa13.05□□□□□ -0.32
MCF2L-216ENST00000439475 DZIP1LQ8IYY4 767 aaKnown RBP13.05□□□□□ -0.32
MCF2L-216ENST00000439475 DCPSQ96C86 337 aaKnown RBP13.05□□□□□ -0.32
MCF2L-216ENST00000439475 MEIS3Q99687 375 aa13.05□□□□□ -0.32
MCF2L-216ENST00000439475 LRRFIP2Q9Y608 721 aaKnown RBP13.05□□□□□ -0.32
MCF2L-216ENST00000439475 PASKQ96RG2 1323 aa13.05□□□□□ -0.32
MCF2L-216ENST00000439475 SCN9AQ15858 1988 aa13.04□□□□□ -0.32
MCF2L-216ENST00000439475 SNAP23O00161 211 aa13.04□□□□□ -0.32
MCF2L-216ENST00000439475 GNAI2P04899 355 aa13.04□□□□□ -0.32
MCF2L-216ENST00000439475 IFIT1P09914 478 aaKnown RBP13.04□□□□□ -0.32
MCF2L-216ENST00000439475 KLRK1P26718 216 aa13.04□□□□□ -0.32
MCF2L-216ENST00000439475 HIBADHP31937 336 aaKnown RBP13.04□□□□□ -0.32
MCF2L-216ENST00000439475 HIRAP54198 1017 aaPredicted RBP13.04□□□□□ -0.32
MCF2L-216ENST00000439475 HTRA3P83110 453 aa13.04□□□□□ -0.32
MCF2L-216ENST00000439475 KIF4BQ2VIQ3 1234 aa13.04□□□□□ -0.32
MCF2L-216ENST00000439475 LRRC24Q50LG9 513 aa13.04□□□□□ -0.32
MCF2L-216ENST00000439475 DACT2Q5SW24 774 aa13.04□□□□□ -0.32
MCF2L-216ENST00000439475 KLHDC4Q8TBB5 520 aa13.04□□□□□ -0.32
MCF2L-216ENST00000439475 TRPM4Q8TD43 1214 aa13.04□□□□□ -0.32
MCF2L-216ENST00000439475 KLRG1Q96E93 195 aa13.04□□□□□ -0.32
MCF2L-216ENST00000439475 ADAMTSL1Q8N6G6 1762 aa13.03□□□□□ -0.32
MCF2L-216ENST00000439475 FRAT2O75474 233 aaPredicted RBP13.03□□□□□ -0.32
MCF2L-216ENST00000439475 CIAO1O76071 339 aa13.03□□□□□ -0.32
MCF2L-216ENST00000439475 IL1R1P14778 569 aa13.03□□□□□ -0.32
MCF2L-216ENST00000439475 RFX5P48382 616 aaPredicted RBP13.03□□□□□ -0.32
MCF2L-216ENST00000439475 ZNF280AP59817 542 aaPredicted RBP13.03□□□□□ -0.32
MCF2L-216ENST00000439475 FKBP1AP62942 108 aaKnown RBP13.03□□□□□ -0.32
MCF2L-216ENST00000439475 PTPN12Q05209 780 aaKnown RBP13.03□□□□□ -0.32
MCF2L-216ENST00000439475 TMEM57Q8N5G2 664 aa13.03□□□□□ -0.32
MCF2L-216ENST00000439475 DNAJC5GQ8N7S2 189 aa13.03□□□□□ -0.32
MCF2L-216ENST00000439475 GMLQ99445 158 aa13.03□□□□□ -0.32
MCF2L-216ENST00000439475 MYOZ2Q9NPC6 264 aa13.03□□□□□ -0.32
MCF2L-216ENST00000439475 CEP126Q9P2H0 1117 aa13.03□□□□□ -0.32
MCF2L-216ENST00000439475 ZNF609O15014 1411 aa13.03□□□□□ -0.32
MCF2L-216ENST00000439475 PSME4Q14997 1843 aa13.02□□□□□ -0.32
MCF2L-216ENST00000439475 SHTN1A0MZ66 631 aa13.02□□□□□ -0.33
MCF2L-216ENST00000439475 SRGAP3O43295 1099 aa13.02□□□□□ -0.33
MCF2L-216ENST00000439475 SASH1O94885 1247 aa13.02□□□□□ -0.33
MCF2L-216ENST00000439475 SLC5A1P13866 664 aa13.02□□□□□ -0.33
MCF2L-216ENST00000439475 IL15P40933 162 aaPredicted RBP13.02□□□□□ -0.33
MCF2L-216ENST00000439475 PUM3Q15397 648 aaKnown RBP13.02□□□□□ -0.33
MCF2L-216ENST00000439475 SULF1Q8IWU6 871 aa13.02□□□□□ -0.33
MCF2L-216ENST00000439475 COPRSQ9NQ92 184 aa13.02□□□□□ -0.33
MCF2L-216ENST00000439475 SCARF1Q14162 830 aa13.01□□□□□ -0.33
MCF2L-216ENST00000439475 DEFB115Q30KQ5 88 aa13.01□□□□□ -0.33
MCF2L-216ENST00000439475 USP48Q86UV5 1035 aa13.01□□□□□ -0.33
MCF2L-216ENST00000439475 ITPRIPQ8IWB1 547 aa13.01□□□□□ -0.33
MCF2L-216ENST00000439475 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.01□□□□□ -0.33
MCF2L-216ENST00000439475 TDRD7Q8NHU6 1098 aaKnown RBP13.01□□□□□ -0.33
MCF2L-216ENST00000439475 LPIN2Q92539 896 aa13.01□□□□□ -0.33
MCF2L-216ENST00000439475 FAM84BQ96KN1 310 aaPredicted RBP13.01□□□□□ -0.33
MCF2L-216ENST00000439475 GLIS2Q9BZE0 524 aaPredicted RBP13.01□□□□□ -0.33
MCF2L-216ENST00000439475 ABT1Q9ULW3 272 aaKnown RBP13.01□□□□□ -0.33
MCF2L-216ENST00000439475 IRS2Q9Y4H2 1338 aa13.01□□□□□ -0.33
MCF2L-216ENST00000439475 GYG1P46976 350 aa13□□□□□ -0.33
MCF2L-216ENST00000439475 MTX1Q13505 466 aa13□□□□□ -0.33
MCF2L-216ENST00000439475 KRT26Q7Z3Y9 468 aa13□□□□□ -0.33
MCF2L-216ENST00000439475 FBXO33Q7Z6M2 555 aa13□□□□□ -0.33
MCF2L-216ENST00000439475 KIAA0825Q8IV33 1275 aa13□□□□□ -0.33
MCF2L-216ENST00000439475 SIL1Q9H173 461 aa13□□□□□ -0.33
MCF2L-216ENST00000439475 CHMP4BQ9H444 224 aaKnown RBP13□□□□□ -0.33
MCF2L-216ENST00000439475 RCAN3Q9UKA8 241 aa13□□□□□ -0.33
MCF2L-216ENST00000439475 TNNQ9UQP3 1299 aa13□□□□□ -0.33
MCF2L-216ENST00000439475 FAM205AQ6ZU69 1335 aa12.99□□□□□ -0.33
MCF2L-216ENST00000439475 TRAF5O00463 557 aa12.99□□□□□ -0.33
MCF2L-216ENST00000439475 CELF2O95319 508 aaKnown RBP12.99□□□□□ -0.33
MCF2L-216ENST00000439475 G3BP1Q13283 466 aaKnown RBP eCLIP12.99□□□□□ -0.33
MCF2L-216ENST00000439475 VGLL2Q8N8G2 317 aa12.99□□□□□ -0.33
MCF2L-216ENST00000439475 TBC1D22AQ8WUA7 517 aa12.99□□□□□ -0.33
MCF2L-216ENST00000439475 MXD3Q9BW11 206 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms