RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 ZNF335Q9H4Z2 1342 aaPredicted RBP14.22□□□□□ -0.13
TCOF1-205ENST00000439160 PTPDC1A2A3K4 754 aa14.21□□□□□ -0.13
TCOF1-205ENST00000439160 DACT1Q9NYF0 836 aa14.21□□□□□ -0.13
TCOF1-205ENST00000439160 AOX1Q06278 1338 aa14.21□□□□□ -0.13
TCOF1-205ENST00000439160 MARCKSP29966 332 aaPredicted RBP14.21□□□□□ -0.13
TCOF1-205ENST00000439160 DEF6Q9H4E7 631 aa14.21□□□□□ -0.13
TCOF1-205ENST00000439160 HELLSQ9NRZ9 838 aa14.21□□□□□ -0.13
TCOF1-205ENST00000439160 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.21□□□□□ -0.132e-7■■■■■ 35.6
TCOF1-205ENST00000439160 ARGLU1Q9NWB6 273 aaPredicted RBP14.21□□□□□ -0.13
TCOF1-205ENST00000439160 SPHKAPQ2M3C7 1700 aa14.21□□□□□ -0.13
TCOF1-205ENST00000439160 ABCA9Q8IUA7 1624 aa14.21□□□□□ -0.14
TCOF1-205ENST00000439160 USP21Q9UK80 565 aa14.21□□□□□ -0.14
TCOF1-205ENST00000439160 KDRP35968 1356 aa14.21□□□□□ -0.14
TCOF1-205ENST00000439160 CCP110O43303 1012 aa14.2□□□□□ -0.14
TCOF1-205ENST00000439160 CROCC2H7BZ55 1655 aa14.2□□□□□ -0.14
TCOF1-205ENST00000439160 SFPQP23246 707 aaKnown RBP eCLIP14.2□□□□□ -0.14
TCOF1-205ENST00000439160 CDK12Q9NYV4 1490 aaPredicted RBP14.2□□□□□ -0.14
TCOF1-205ENST00000439160 GPAA1O43292 621 aa14.2□□□□□ -0.14
TCOF1-205ENST00000439160 GNAT2P19087 354 aa14.2□□□□□ -0.14
TCOF1-205ENST00000439160 EIF5P55010 431 aaKnown RBP14.2□□□□□ -0.14
TCOF1-205ENST00000439160 ZFYVE27Q5T4F4 411 aa14.2□□□□□ -0.14
TCOF1-205ENST00000439160 ZAP70P43403 619 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 FEZ1Q99689 392 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 ANKRD2Q9GZV1 360 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 CCDC112Q8NEF3 446 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 APPBP2Q92624 585 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 CARD10Q9BWT7 1032 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 B4E1Z4 1266 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 LDHBP07195 334 aaKnown RBP14.19□□□□□ -0.14
TCOF1-205ENST00000439160 UBA7P41226 1012 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 CCDC102BQ68D86 513 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 ZNF771Q7L3S4 317 aaPredicted RBP14.19□□□□□ -0.14
TCOF1-205ENST00000439160 ARMT1Q9H993 441 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 CLIP2Q9UDT6 1046 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 ALKQ9UM73 1620 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 ADCY5O95622 1261 aa14.19□□□□□ -0.14
TCOF1-205ENST00000439160 NOM1Q5C9Z4 860 aaKnown RBP14.19□□□□□ -0.14
TCOF1-205ENST00000439160 GLI2P10070 1586 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 RPS6KB1P23443 525 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 LRSAM1Q6UWE0 723 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 CABP5Q9NP86 173 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 SYKP43405 635 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 TRMT1LQ7Z2T5 733 aaKnown RBP14.18□□□□□ -0.14
TCOF1-205ENST00000439160 CCDC12Q8WUD4 166 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-205ENST00000439160 RAB34Q9BZG1 259 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 E9PCH4 1651 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 FAM173BQ6P4H8 233 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 LPIN2Q92539 896 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 NCOA5Q9HCD5 579 aaKnown RBP14.18□□□□□ -0.14
TCOF1-205ENST00000439160 AXIN2Q9Y2T1 843 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 WDR17Q8IZU2 1322 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 IDEP14735 1019 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 TCP11L1Q9NUJ3 509 aa14.18□□□□□ -0.14
TCOF1-205ENST00000439160 ATP5JP18859 108 aa14.17□□□□□ -0.14
TCOF1-205ENST00000439160 STX1AQ16623 288 aa14.17□□□□□ -0.14
TCOF1-205ENST00000439160 TMEM266Q2M3C6 531 aa14.17□□□□□ -0.14
TCOF1-205ENST00000439160 LRRC24Q50LG9 513 aa14.17□□□□□ -0.14
TCOF1-205ENST00000439160 PRDM1O75626 825 aa14.17□□□□□ -0.14
TCOF1-205ENST00000439160 HIBADHP31937 336 aaKnown RBP14.17□□□□□ -0.14
TCOF1-205ENST00000439160 SIRT2Q8IXJ6 389 aa14.17□□□□□ -0.14
TCOF1-205ENST00000439160 IBTKQ9P2D0 1353 aaPredicted RBP14.17□□□□□ -0.14
TCOF1-205ENST00000439160 KCNG4Q8TDN1 519 aa14.17□□□□□ -0.14
TCOF1-205ENST00000439160 PARP3Q9Y6F1 533 aa14.17□□□□□ -0.14
TCOF1-205ENST00000439160 UQCRHLA0A096LP55 91 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 UQCRHP07919 91 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 HSPA4P34932 840 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 ODF2Q5BJF6 829 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 HEATR3Q7Z4Q2 680 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 DENND2AQ9ULE3 1009 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 MRPS27Q92552 414 aaKnown RBP14.16□□□□□ -0.14
TCOF1-205ENST00000439160 MADDQ8WXG6 1647 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 UFL1O94874 794 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 PKNOX2Q96KN3 472 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 PALD1Q9ULE6 856 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 TOP1P11387 765 aaKnown RBP14.16□□□□□ -0.14
TCOF1-205ENST00000439160 BRINP3Q76B58 766 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 CPLX3Q8WVH0 158 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 SEC62Q99442 399 aaKnown RBP14.16□□□□□ -0.14
TCOF1-205ENST00000439160 UBA5Q9GZZ9 404 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 ZBTB1Q9Y2K1 713 aa14.16□□□□□ -0.14
TCOF1-205ENST00000439160 A0A0D9SFI3 127 aa14.15□□□□□ -0.14
TCOF1-205ENST00000439160 RRP9O43818 475 aaKnown RBP14.15□□□□□ -0.14
TCOF1-205ENST00000439160 SYCP1Q15431 976 aa14.15□□□□□ -0.14
TCOF1-205ENST00000439160 UNC5CLQ8IV45 518 aa14.15□□□□□ -0.14
TCOF1-205ENST00000439160 CUL5Q93034 780 aa14.15□□□□□ -0.14
TCOF1-205ENST00000439160 ADGRB3O60242 1522 aa14.15□□□□□ -0.14
TCOF1-205ENST00000439160 CTSWP56202 376 aa14.15□□□□□ -0.14
TCOF1-205ENST00000439160 OGFOD1Q8N543 542 aa14.15□□□□□ -0.14
TCOF1-205ENST00000439160 SETD1BQ9UPS6 1966 aaKnown RBP14.15□□□□□ -0.14
TCOF1-205ENST00000439160 SPTLC2O15270 562 aa14.15□□□□□ -0.14
TCOF1-205ENST00000439160 EPB41L2O43491 1005 aaKnown RBP14.15□□□□□ -0.14
TCOF1-205ENST00000439160 MAP7D2Q96T17 732 aa14.15□□□□□ -0.14
TCOF1-205ENST00000439160 CEP152O94986 1710 aa14.15□□□□□ -0.15
TCOF1-205ENST00000439160 LOC102724428A0A0B4J2F2 783 aa14.14□□□□□ -0.15
TCOF1-205ENST00000439160 SIK1P57059 783 aa14.14□□□□□ -0.15
TCOF1-205ENST00000439160 PTH1RQ03431 593 aa14.14□□□□□ -0.15
TCOF1-205ENST00000439160 HSP90AA4PQ58FG1 418 aa14.14□□□□□ -0.15
TCOF1-205ENST00000439160 ERBB4Q15303 1308 aa14.14□□□□□ -0.15
TCOF1-205ENST00000439160 AFMP43652 599 aa14.14□□□□□ -0.15
TCOF1-205ENST00000439160 FAM182BQ5T319 152 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms