RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 XPCQ01831 940 aaPredicted RBP7.09□□□□□ -1.27
USP40-204ENST00000427947 KIAA0319Q5VV43 1072 aa7.09□□□□□ -1.27
USP40-204ENST00000427947 C8orf86Q6ZUL3 223 aa7.09□□□□□ -1.27
USP40-204ENST00000427947 ZSCAN1Q8NBB4 408 aa7.09□□□□□ -1.27
USP40-204ENST00000427947 FAM161BQ96MY7 647 aa7.09□□□□□ -1.27
USP40-204ENST00000427947 LIN7BQ9HAP6 207 aa7.09□□□□□ -1.27
USP40-204ENST00000427947 RRAGCQ9HB90 399 aa7.09□□□□□ -1.27
USP40-204ENST00000427947 PARP2Q9UGN5 583 aa7.09□□□□□ -1.27
USP40-204ENST00000427947 SPG7Q9UQ90 795 aa7.09□□□□□ -1.27
USP40-204ENST00000427947 NFKBIEO00221 500 aa7.08□□□□□ -1.28
USP40-204ENST00000427947 PDE2AO00408 941 aaPredicted RBP7.08□□□□□ -1.28
USP40-204ENST00000427947 LILRB5O75023 590 aa7.08□□□□□ -1.28
USP40-204ENST00000427947 GNA15P30679 374 aa7.08□□□□□ -1.28
USP40-204ENST00000427947 GDF6Q6KF10 455 aaPredicted RBP7.08□□□□□ -1.28
USP40-204ENST00000427947 C20orf204Q6ZNR8 217 aa7.08□□□□□ -1.28
USP40-204ENST00000427947 LACRTQ9GZZ8 138 aa7.08□□□□□ -1.28
USP40-204ENST00000427947 SUV39H2Q9H5I1 410 aa7.08□□□□□ -1.28
USP40-204ENST00000427947 TRIM33Q9UPN9 1127 aa7.08□□□□□ -1.28
USP40-204ENST00000427947 LORP23490 312 aaPredicted RBP7.07□□□□□ -1.28
USP40-204ENST00000427947 INSM1Q01101 510 aaPredicted RBP7.07□□□□□ -1.28
USP40-204ENST00000427947 PSMD2Q13200 908 aa7.07□□□□□ -1.28
USP40-204ENST00000427947 GRM2Q14416 872 aa7.07□□□□□ -1.28
USP40-204ENST00000427947 NXPE4Q6UWF7 544 aa7.07□□□□□ -1.28
USP40-204ENST00000427947 TMEM102Q8N9M5 508 aaPredicted RBP7.07□□□□□ -1.28
USP40-204ENST00000427947 ASAP3Q8TDY4 903 aa7.07□□□□□ -1.28
USP40-204ENST00000427947 ZNF428Q96B54 188 aa7.07□□□□□ -1.28
USP40-204ENST00000427947 TCF12Q99081 682 aa7.07□□□□□ -1.28
USP40-204ENST00000427947 POP1Q99575 1024 aaKnown RBP7.07□□□□□ -1.28
USP40-204ENST00000427947 BCO2Q9BYV7 579 aa7.07□□□□□ -1.28
USP40-204ENST00000427947 METTL12A8MUP2 240 aa7.06□□□□□ -1.28
USP40-204ENST00000427947 ARHGEF15O94989 841 aa7.06□□□□□ -1.28
USP40-204ENST00000427947 DGKGP49619 791 aa7.06□□□□□ -1.28
USP40-204ENST00000427947 AFF1P51825 1210 aaKnown RBP7.06□□□□□ -1.28
USP40-204ENST00000427947 CCNJLQ8IV13 435 aa7.06□□□□□ -1.28
USP40-204ENST00000427947 TTC9Q92623 222 aa7.06□□□□□ -1.28
USP40-204ENST00000427947 NXPE3Q969Y0 559 aa7.06□□□□□ -1.28
USP40-204ENST00000427947 BHLHE41Q9C0J9 482 aaPredicted RBP7.06□□□□□ -1.28
USP40-204ENST00000427947 BCL11AQ9H165 835 aa7.06□□□□□ -1.28
USP40-204ENST00000427947 MRS2Q9HD23 443 aa7.06□□□□□ -1.28
USP40-204ENST00000427947 TRAK1Q9UPV9 953 aa7.06□□□□□ -1.28
USP40-204ENST00000427947 FAM177BA6PVY3 158 aa7.05□□□□□ -1.28
USP40-204ENST00000427947 PTPRAP18433 802 aa7.05□□□□□ -1.28
USP40-204ENST00000427947 GRIA4P48058 902 aa7.05□□□□□ -1.28
USP40-204ENST00000427947 RBM25P49756 843 aaKnown RBP7.05□□□□□ -1.28
USP40-204ENST00000427947 DAB2P98082 770 aa7.05□□□□□ -1.28
USP40-204ENST00000427947 GRIK5Q16478 980 aa7.05□□□□□ -1.28
USP40-204ENST00000427947 ADAMTSL4Q6UY14 1074 aa7.05□□□□□ -1.28
USP40-204ENST00000427947 TMC4Q7Z404 712 aa7.05□□□□□ -1.28
USP40-204ENST00000427947 FRMD6Q96NE9 622 aa7.05□□□□□ -1.28
USP40-204ENST00000427947 OSBPL7Q9BZF2 842 aa7.05□□□□□ -1.28
USP40-204ENST00000427947 C12orf49Q9H741 205 aa7.05□□□□□ -1.28
USP40-204ENST00000427947 GIPC1O14908 333 aa7.04□□□□□ -1.28
USP40-204ENST00000427947 HOXB4P17483 251 aaPredicted RBP7.04□□□□□ -1.28
USP40-204ENST00000427947 EIF4BP23588 611 aaKnown RBP7.04□□□□□ -1.28
USP40-204ENST00000427947 FCGRTP55899 365 aa7.04□□□□□ -1.28
USP40-204ENST00000427947 SNRPNP63162 240 aaKnown RBP7.04□□□□□ -1.28
USP40-204ENST00000427947 PRPF40BQ6NWY9 871 aaKnown RBP7.04□□□□□ -1.28
USP40-204ENST00000427947 IL22RA1Q8N6P7 574 aa7.04□□□□□ -1.28
USP40-204ENST00000427947 GLIS3Q8NEA6 775 aa7.04□□□□□ -1.28
USP40-204ENST00000427947 SRCIN1Q9C0H9 1055 aa7.04□□□□□ -1.28
USP40-204ENST00000427947 ABCB6Q9NP58 842 aa7.04□□□□□ -1.28
USP40-204ENST00000427947 AK5Q9Y6K8 562 aa7.04□□□□□ -1.28
USP40-204ENST00000427947 SORBS3O60504 671 aa7.03□□□□□ -1.28
USP40-204ENST00000427947 SPRED3Q2MJR0 410 aa7.03□□□□□ -1.28
USP40-204ENST00000427947 BSNDQ8WZ55 320 aa7.03□□□□□ -1.28
USP40-204ENST00000427947 PRDM6Q9NQX0 595 aa7.03□□□□□ -1.28
USP40-204ENST00000427947 PPP4R2Q9NY27 417 aa7.03□□□□□ -1.28
USP40-204ENST00000427947 FAM8A1Q9UBU6 413 aa7.03□□□□□ -1.28
USP40-204ENST00000427947 VTI1BQ9UEU0 232 aa7.03□□□□□ -1.28
USP40-204ENST00000427947 A0A096LPE4 126 aa7.02□□□□□ -1.29
USP40-204ENST00000427947 TMEM238LA0A1B0GVL6 79 aa7.02□□□□□ -1.29
USP40-204ENST00000427947 A0A1W2PPZ6 126 aa7.02□□□□□ -1.29
USP40-204ENST00000427947 USP17L7P0C7H9 530 aa7.02□□□□□ -1.29
USP40-204ENST00000427947 NID1P14543 1247 aa7.02□□□□□ -1.29
USP40-204ENST00000427947 CDC27P30260 824 aa7.02□□□□□ -1.29
USP40-204ENST00000427947 CDC25BP30305 580 aa7.02□□□□□ -1.29
USP40-204ENST00000427947 MSL1Q68DK7 614 aa7.02□□□□□ -1.29
USP40-204ENST00000427947 DTHD1Q6ZMT9 781 aa7.02□□□□□ -1.29
USP40-204ENST00000427947 WFDC8Q8IUA0 241 aa7.02□□□□□ -1.29
USP40-204ENST00000427947 MRRFQ96E11 262 aaKnown RBP7.02□□□□□ -1.29
USP40-204ENST00000427947 MUC3BQ9H195 1237 aa7.02□□□□□ -1.29
USP40-204ENST00000427947 SH2B1Q9NRF2 756 aaPredicted RBP7.02□□□□□ -1.29
USP40-204ENST00000427947 UNCXA6NJT0 531 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 EPHA1P21709 976 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 GSTT1P30711 240 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 ITGAEP38570 1179 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 BAG6P46379 1132 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 CABP4P57796 275 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 COL9A3Q14050 684 aaPredicted RBP7.01□□□□□ -1.29
USP40-204ENST00000427947 TXNDC11Q6PKC3 985 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 PODNQ7Z5L7 613 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 CACTIN-AS1Q8N1I8 211 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 ADAM19Q9H013 955 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 MKL2Q9ULH7 1088 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 SOX13Q9UN79 622 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 ADAMTS8Q9UP79 889 aa7.01□□□□□ -1.29
USP40-204ENST00000427947 GNB5O14775 395 aa7□□□□□ -1.29
USP40-204ENST00000427947 ITPKAP23677 461 aa7□□□□□ -1.29
USP40-204ENST00000427947 MRPL58Q14197 206 aaKnown RBP7□□□□□ -1.29
USP40-204ENST00000427947 DMRTC2Q8IXT2 367 aaPredicted RBP7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms