RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 MXD3Q9BW11 206 aa23.15■■□□□ 1.3
VCP-202ENST00000417448 USP17L3A6NCW0 530 aa23.14■■□□□ 1.29
VCP-202ENST00000417448 USP17L4A6NCW7 530 aa23.14■■□□□ 1.29
VCP-202ENST00000417448 WTIPA6NIX2 430 aaPredicted RBP23.14■■□□□ 1.29
VCP-202ENST00000417448 USP17L1Q7RTZ2 530 aa23.14■■□□□ 1.29
VCP-202ENST00000417448 SPEF2Q9C093 1822 aa23.14■■□□□ 1.29
VCP-202ENST00000417448 TRIM28Q13263 835 aaKnown RBP23.13■■□□□ 1.29
VCP-202ENST00000417448 OTOP1Q7RTM1 612 aa23.13■■□□□ 1.29
VCP-202ENST00000417448 MBIPQ9NS73 344 aa23.13■■□□□ 1.29
VCP-202ENST00000417448 TRIM17Q9Y577 477 aa23.13■■□□□ 1.29
VCP-202ENST00000417448 WNT10BO00744 389 aa23.12■■□□□ 1.29
VCP-202ENST00000417448 ZNF853P0CG23 659 aa23.12■■□□□ 1.29
VCP-202ENST00000417448 HDGFL1Q5TGJ6 251 aa23.12■■□□□ 1.29
VCP-202ENST00000417448 PRKG1Q13976 671 aa23.11■■□□□ 1.29
VCP-202ENST00000417448 SPRYD7Q5W111 196 aa23.11■■□□□ 1.29
VCP-202ENST00000417448 PODNQ7Z5L7 613 aa23.11■■□□□ 1.29
VCP-202ENST00000417448 TSR2Q969E8 191 aaKnown RBP23.11■■□□□ 1.29
VCP-202ENST00000417448 FZD1Q9UP38 647 aa23.11■■□□□ 1.29
VCP-202ENST00000417448 XDHP47989 1333 aa23.1■■□□□ 1.29
VCP-202ENST00000417448 CCDC27Q2M243 656 aa23.1■■□□□ 1.29
VCP-202ENST00000417448 DACT2Q5SW24 774 aa23.1■■□□□ 1.29
VCP-202ENST00000417448 ZBTB38Q8NAP3 1195 aaPredicted RBP23.1■■□□□ 1.29
VCP-202ENST00000417448 CCDC85AQ96PX6 553 aaPredicted RBP23.1■■□□□ 1.29
VCP-202ENST00000417448 CEP290O15078 2479 aa23.09■■□□□ 1.29
VCP-202ENST00000417448 SASH1O94885 1247 aa23.09■■□□□ 1.29
VCP-202ENST00000417448 NF2P35240 595 aa23.09■■□□□ 1.29
VCP-202ENST00000417448 LDLRAD1Q5T700 205 aa23.09■■□□□ 1.29
VCP-202ENST00000417448 INTS3Q68E01 1043 aaKnown RBP23.09■■□□□ 1.29
VCP-202ENST00000417448 IFT57Q9NWB7 429 aa23.09■■□□□ 1.29
VCP-202ENST00000417448 DBF4Q9UBU7 674 aaPredicted RBP23.09■■□□□ 1.29
VCP-202ENST00000417448 ELL2O00472 640 aaPredicted RBP23.08■■□□□ 1.29
VCP-202ENST00000417448 GNAI1P63096 354 aa23.08■■□□□ 1.29
VCP-202ENST00000417448 SPINK5Q9NQ38 1064 aaPredicted RBP23.08■■□□□ 1.29
VCP-202ENST00000417448 EN2P19622 333 aaPredicted RBP23.07■■□□□ 1.28
VCP-202ENST00000417448 CCDC152Q4G0S7 254 aa23.07■■□□□ 1.28
VCP-202ENST00000417448 ARMC9Q7Z3E5 817 aa23.07■■□□□ 1.28
VCP-202ENST00000417448 IFNL1Q8IU54 200 aa23.07■■□□□ 1.28
VCP-202ENST00000417448 JARID2Q92833 1246 aaPredicted RBP23.07■■□□□ 1.28
VCP-202ENST00000417448 TRIOBPQ9H2D6 2365 aa23.07■■□□□ 1.28
VCP-202ENST00000417448 MED23Q9ULK4 1368 aa23.06■■□□□ 1.28
VCP-202ENST00000417448 IGF2BP3O00425 579 aaKnown RBP eCLIP23.06■■□□□ 1.28
VCP-202ENST00000417448 ALDH1A1P00352 501 aa23.06■■□□□ 1.28
VCP-202ENST00000417448 ATP2B4P23634 1241 aa23.06■■□□□ 1.28
VCP-202ENST00000417448 CALD1Q05682 793 aaKnown RBP23.06■■□□□ 1.28
VCP-202ENST00000417448 ANGEL1Q9UNK9 670 aaKnown RBP23.06■■□□□ 1.28
VCP-202ENST00000417448 PTPN22Q9Y2R2 807 aa23.06■■□□□ 1.28
VCP-202ENST00000417448 SSC5DA1L4H1 1573 aa23.06■■□□□ 1.28
VCP-202ENST00000417448 CAP1Q01518 475 aa23.05■■□□□ 1.28
VCP-202ENST00000417448 OGFOD1Q8N543 542 aa23.05■■□□□ 1.28
VCP-202ENST00000417448 C8orf58Q8NAV2 365 aa23.05■■□□□ 1.28
VCP-202ENST00000417448 HYPKQ9NX55 129 aa23.05■■□□□ 1.28
VCP-202ENST00000417448 MYH3P11055 1940 aa23.04■■□□□ 1.28
VCP-202ENST00000417448 HOXB7P09629 217 aa23.04■■□□□ 1.28
VCP-202ENST00000417448 ARMC5Q96C12 935 aa23.04■■□□□ 1.28
VCP-202ENST00000417448 COLQQ9Y215 455 aaPredicted RBP23.04■■□□□ 1.28
VCP-202ENST00000417448 ECM29Q5VYK3 1845 aa23.03■■□□□ 1.28
VCP-202ENST00000417448 MANSC4A6NHS7 340 aaPredicted RBP23.03■■□□□ 1.28
VCP-202ENST00000417448 PDE8AO60658 829 aa23.03■■□□□ 1.28
VCP-202ENST00000417448 DUSP27Q5VZP5 1158 aa23.03■■□□□ 1.28
VCP-202ENST00000417448 ANKRD18AQ8IVF6 992 aa23.03■■□□□ 1.28
VCP-202ENST00000417448 CD99L2Q8TCZ2 262 aa23.03■■□□□ 1.28
VCP-202ENST00000417448 FBXW7Q969H0 707 aa23.03■■□□□ 1.28
VCP-202ENST00000417448 ZBED3Q96IU2 234 aaPredicted RBP23.03■■□□□ 1.28
VCP-202ENST00000417448 CLMNQ96JQ2 1002 aa23.03■■□□□ 1.28
VCP-202ENST00000417448 PCCAP05165 728 aaPredicted RBP23.02■■□□□ 1.28
VCP-202ENST00000417448 STRIP1Q5VSL9 837 aa23.02■■□□□ 1.28
VCP-202ENST00000417448 RIC3Q7Z5B4 369 aa23.02■■□□□ 1.28
VCP-202ENST00000417448 APOBEC3FQ8IUX4 373 aaKnown RBP23.02■■□□□ 1.28
VCP-202ENST00000417448 WDR63Q8IWG1 891 aa23.02■■□□□ 1.28
VCP-202ENST00000417448 TSPYL6Q8N831 410 aa23.02■■□□□ 1.28
VCP-202ENST00000417448 MYD88Q99836 296 aa23.02■■□□□ 1.28
VCP-202ENST00000417448 MYO3BQ8WXR4 1341 aa23.02■■□□□ 1.28
VCP-202ENST00000417448 RANBP2P49792 3224 aaKnown RBP23.01■■□□□ 1.27
VCP-202ENST00000417448 NCBP3Q53F19 620 aaKnown RBP23.01■■□□□ 1.27
VCP-202ENST00000417448 TXNRD3Q86VQ6 643 aa23.01■■□□□ 1.27
VCP-202ENST00000417448 WNK4Q96J92 1243 aa23.01■■□□□ 1.27
VCP-202ENST00000417448 PHAXQ9H814 394 aaKnown RBP23.01■■□□□ 1.27
VCP-202ENST00000417448 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.01■■□□□ 1.27
VCP-202ENST00000417448 HSP90B1P14625 803 aaKnown RBP23■■□□□ 1.27
VCP-202ENST00000417448 INHBEP58166 350 aa23■■□□□ 1.27
VCP-202ENST00000417448 MINPP1Q9UNW1 487 aa23■■□□□ 1.27
VCP-202ENST00000417448 OTOFQ9HC10 1997 aa23■■□□□ 1.27
VCP-202ENST00000417448 COL1A1P02452 1464 aaPredicted RBP22.99■■□□□ 1.27
VCP-202ENST00000417448 ZBTB48P10074 688 aaPredicted RBP22.99■■□□□ 1.27
VCP-202ENST00000417448 CRHR2Q13324 411 aa22.99■■□□□ 1.27
VCP-202ENST00000417448 MAP3K11Q16584 847 aa22.99■■□□□ 1.27
VCP-202ENST00000417448 KIAA0825Q8IV33 1275 aa22.99■■□□□ 1.27
VCP-202ENST00000417448 CCDC191Q8NCU4 936 aa22.99■■□□□ 1.27
VCP-202ENST00000417448 SLC10A4Q96EP9 437 aa22.99■■□□□ 1.27
VCP-202ENST00000417448 ERO1AQ96HE7 468 aa22.99■■□□□ 1.27
VCP-202ENST00000417448 IL16Q14005 1332 aa22.99■■□□□ 1.27
VCP-202ENST00000417448 ZNF521Q96K83 1311 aa22.99■■□□□ 1.27
VCP-202ENST00000417448 FANCIQ9NVI1 1328 aa22.99■■□□□ 1.27
VCP-202ENST00000417448 GOLGA2Q08379 1002 aa22.98■■□□□ 1.27
VCP-202ENST00000417448 KLRK1P26718 216 aa22.97■■□□□ 1.27
VCP-202ENST00000417448 GJA5P36382 358 aa22.97■■□□□ 1.27
VCP-202ENST00000417448 CCT4P50991 539 aaKnown RBP22.97■■□□□ 1.27
VCP-202ENST00000417448 CDCA7LQ96GN5 454 aa22.97■■□□□ 1.27
VCP-202ENST00000417448 COA1Q9GZY4 146 aa22.97■■□□□ 1.27
VCP-202ENST00000417448 DEFB129Q9H1M3 183 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms