RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 SPDYE3A6NKU9 549 aa7.58□□□□□ -1.2
VPS54-204ENST00000416400 IGHA2P01877 340 aa7.58□□□□□ -1.2
VPS54-204ENST00000416400 ENOX2Q16206 610 aaKnown RBP7.58□□□□□ -1.2
VPS54-204ENST00000416400 USPL1Q5W0Q7 1092 aa7.58□□□□□ -1.2
VPS54-204ENST00000416400 GDF6Q6KF10 455 aaPredicted RBP7.58□□□□□ -1.2
VPS54-204ENST00000416400 TTC9Q92623 222 aa7.58□□□□□ -1.2
VPS54-204ENST00000416400 RASSF4Q9H2L5 321 aa7.58□□□□□ -1.2
VPS54-204ENST00000416400 PDE2AO00408 941 aaPredicted RBP7.57□□□□□ -1.2
VPS54-204ENST00000416400 LDHBP07195 334 aaKnown RBP7.57□□□□□ -1.2
VPS54-204ENST00000416400 PTPRAP18433 802 aa7.57□□□□□ -1.2
VPS54-204ENST00000416400 LORP23490 312 aaPredicted RBP7.57□□□□□ -1.2
VPS54-204ENST00000416400 VAMP1P23763 118 aa7.57□□□□□ -1.2
VPS54-204ENST00000416400 ATP11AP98196 1134 aa7.57□□□□□ -1.2
VPS54-204ENST00000416400 C20orf204Q6ZNR8 217 aa7.57□□□□□ -1.2
VPS54-204ENST00000416400 WFDC8Q8IUA0 241 aa7.57□□□□□ -1.2
VPS54-204ENST00000416400 FBF1Q8TES7 1133 aa7.57□□□□□ -1.2
VPS54-204ENST00000416400 EHD4Q9H223 541 aa7.57□□□□□ -1.2
VPS54-204ENST00000416400 NPHS2Q9NP85 383 aa7.57□□□□□ -1.2
VPS54-204ENST00000416400 PRDM6Q9NQX0 595 aa7.57□□□□□ -1.2
VPS54-204ENST00000416400 GNB5O14775 395 aa7.56□□□□□ -1.2
VPS54-204ENST00000416400 DGKGP49619 791 aa7.56□□□□□ -1.2
VPS54-204ENST00000416400 TRAPPC3LQ5T215 181 aa7.56□□□□□ -1.2
VPS54-204ENST00000416400 C8orf86Q6ZUL3 223 aa7.56□□□□□ -1.2
VPS54-204ENST00000416400 ZKSCAN3Q9BRR0 538 aa7.56□□□□□ -1.2
VPS54-204ENST00000416400 DZANK1Q9NVP4 752 aa7.56□□□□□ -1.2
VPS54-204ENST00000416400 NOP53Q9NZM5 478 aaKnown RBP7.56□□□□□ -1.2
VPS54-204ENST00000416400 TRAK1Q9UPV9 953 aa7.56□□□□□ -1.2
VPS54-204ENST00000416400 RNF225M0QZC1 329 aaPredicted RBP7.55□□□□□ -1.2
VPS54-204ENST00000416400 ITGAEP38570 1179 aa7.55□□□□□ -1.2
VPS54-204ENST00000416400 AFF1P51825 1210 aaKnown RBP7.55□□□□□ -1.2
VPS54-204ENST00000416400 CABP4P57796 275 aa7.55□□□□□ -1.2
VPS54-204ENST00000416400 SNRPNP63162 240 aaKnown RBP7.55□□□□□ -1.2
VPS54-204ENST00000416400 FAM117BQ6P1L5 589 aa7.55□□□□□ -1.2
VPS54-204ENST00000416400 IL22RA1Q8N6P7 574 aa7.55□□□□□ -1.2
VPS54-204ENST00000416400 ASAP3Q8TDY4 903 aa7.55□□□□□ -1.2
VPS54-204ENST00000416400 LACRTQ9GZZ8 138 aa7.55□□□□□ -1.2
VPS54-204ENST00000416400 MUC3BQ9H195 1237 aa7.55□□□□□ -1.2
VPS54-204ENST00000416400 LIN7BQ9HAP6 207 aa7.55□□□□□ -1.2
VPS54-204ENST00000416400 LATS2Q9NRM7 1088 aa7.55□□□□□ -1.2
VPS54-204ENST00000416400 IGSF5Q9NSI5 407 aa7.55□□□□□ -1.2
VPS54-204ENST00000416400 SPG7Q9UQ90 795 aa7.55□□□□□ -1.2
VPS54-204ENST00000416400 A0A1W2PP55 124 aa7.54□□□□□ -1.2
VPS54-204ENST00000416400 PRPF40AO75400 957 aaKnown RBP7.54□□□□□ -1.2
VPS54-204ENST00000416400 ACPPP15309 386 aa7.54□□□□□ -1.2
VPS54-204ENST00000416400 CDC27P30260 824 aa7.54□□□□□ -1.2
VPS54-204ENST00000416400 XPCQ01831 940 aaPredicted RBP7.54□□□□□ -1.2
VPS54-204ENST00000416400 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS54-204ENST00000416400 KIAA0319Q5VV43 1072 aa7.54□□□□□ -1.2
VPS54-204ENST00000416400 TMEM102Q8N9M5 508 aaPredicted RBP7.54□□□□□ -1.2
VPS54-204ENST00000416400 EPS8L3Q8TE67 593 aaKnown RBP7.54□□□□□ -1.2
VPS54-204ENST00000416400 TRIM33Q9UPN9 1127 aa7.54□□□□□ -1.2
VPS54-204ENST00000416400 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.54□□□□□ -1.2
VPS54-204ENST00000416400 CNTNAP5Q8WYK1 1306 aa7.53□□□□□ -1.2
VPS54-204ENST00000416400 TRPA1O75762 1119 aa7.53□□□□□ -1.2
VPS54-204ENST00000416400 TCF3P15923 654 aa7.53□□□□□ -1.2
VPS54-204ENST00000416400 RAC1P63000 192 aa7.53□□□□□ -1.2
VPS54-204ENST00000416400 PRRT3Q5FWE3 981 aa7.53□□□□□ -1.2
VPS54-204ENST00000416400 PEAR1Q5VY43 1037 aaPredicted RBP7.53□□□□□ -1.2
VPS54-204ENST00000416400 MSL1Q68DK7 614 aa7.53□□□□□ -1.2
VPS54-204ENST00000416400 DMRTC2Q8IXT2 367 aaPredicted RBP7.53□□□□□ -1.2
VPS54-204ENST00000416400 FRMD6Q96NE9 622 aa7.53□□□□□ -1.2
VPS54-204ENST00000416400 POP1Q99575 1024 aaKnown RBP7.53□□□□□ -1.2
VPS54-204ENST00000416400 SUV39H2Q9H5I1 410 aa7.53□□□□□ -1.2
VPS54-204ENST00000416400 GIPC1O14908 333 aa7.52□□□□□ -1.21
VPS54-204ENST00000416400 RECKO95980 971 aa7.52□□□□□ -1.21
VPS54-204ENST00000416400 IRS1P35568 1242 aa7.52□□□□□ -1.21
VPS54-204ENST00000416400 TRIM28Q13263 835 aaKnown RBP7.52□□□□□ -1.21
VPS54-204ENST00000416400 LINC00114Q6XXX2 140 aa7.52□□□□□ -1.21
VPS54-204ENST00000416400 DCAF11Q8TEB1 546 aa7.52□□□□□ -1.21
VPS54-204ENST00000416400 BSNDQ8WZ55 320 aa7.52□□□□□ -1.21
VPS54-204ENST00000416400 NXPE3Q969Y0 559 aa7.52□□□□□ -1.21
VPS54-204ENST00000416400 PLVAPQ9BX97 442 aa7.52□□□□□ -1.21
VPS54-204ENST00000416400 WWC3Q9ULE0 1092 aa7.52□□□□□ -1.21
VPS54-204ENST00000416400 PPME1Q9Y570 386 aa7.52□□□□□ -1.21
VPS54-204ENST00000416400 NID1P14543 1247 aa7.51□□□□□ -1.21
VPS54-204ENST00000416400 TSNAXIP1Q2TAA8 658 aa7.51□□□□□ -1.21
VPS54-204ENST00000416400 DUSP9Q99956 384 aaKnown RBP7.51□□□□□ -1.21
VPS54-204ENST00000416400 BHLHE41Q9C0J9 482 aaPredicted RBP7.51□□□□□ -1.21
VPS54-204ENST00000416400 ZFYVE1Q9HBF4 777 aa7.51□□□□□ -1.21
VPS54-204ENST00000416400 MRS2Q9HD23 443 aa7.51□□□□□ -1.21
VPS54-204ENST00000416400 PARP2Q9UGN5 583 aa7.51□□□□□ -1.21
VPS54-204ENST00000416400 NFKBIEO00221 500 aa7.5□□□□□ -1.21
VPS54-204ENST00000416400 HOXB4P17483 251 aaPredicted RBP7.5□□□□□ -1.21
VPS54-204ENST00000416400 CDC25BP30305 580 aa7.5□□□□□ -1.21
VPS54-204ENST00000416400 ARL4DP49703 201 aa7.5□□□□□ -1.21
VPS54-204ENST00000416400 MRPL58Q14197 206 aaKnown RBP7.5□□□□□ -1.21
VPS54-204ENST00000416400 GRIK5Q16478 980 aa7.5□□□□□ -1.21
VPS54-204ENST00000416400 CCNJLQ8IV13 435 aa7.5□□□□□ -1.21
VPS54-204ENST00000416400 HHIPQ96QV1 700 aa7.5□□□□□ -1.21
VPS54-204ENST00000416400 BCO2Q9BYV7 579 aa7.5□□□□□ -1.21
VPS54-204ENST00000416400 ADAM19Q9H013 955 aa7.5□□□□□ -1.21
VPS54-204ENST00000416400 A0A096LPE4 126 aa7.49□□□□□ -1.21
VPS54-204ENST00000416400 A0A1W2PPZ6 126 aa7.49□□□□□ -1.21
VPS54-204ENST00000416400 PSMD2Q13200 908 aa7.49□□□□□ -1.21
VPS54-204ENST00000416400 GRM2Q14416 872 aa7.49□□□□□ -1.21
VPS54-204ENST00000416400 PI16Q6UXB8 463 aa7.49□□□□□ -1.21
VPS54-204ENST00000416400 DTHD1Q6ZMT9 781 aa7.49□□□□□ -1.21
VPS54-204ENST00000416400 TMC4Q7Z404 712 aa7.49□□□□□ -1.21
VPS54-204ENST00000416400 MAP4K3Q8IVH8 894 aa7.49□□□□□ -1.21
VPS54-204ENST00000416400 DTWD1Q8N5C7 304 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms