RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 MPNDQ8N594 471 aa17.42■□□□□ 0.38
SF3B1-204ENST00000414963 TBC1D16Q8TBP0 767 aa17.42■□□□□ 0.38
SF3B1-204ENST00000414963 GGA1Q9UJY5 639 aa17.42■□□□□ 0.38
SF3B1-204ENST00000414963 A0A1B0GUL6 1792 aa17.42■□□□□ 0.38
SF3B1-204ENST00000414963 SNED1Q8TER0 1413 aa17.41■□□□□ 0.38
SF3B1-204ENST00000414963 DALRD3Q5D0E6 543 aaKnown RBP17.41■□□□□ 0.38
SF3B1-204ENST00000414963 TSHZ3Q63HK5 1081 aa17.41■□□□□ 0.38
SF3B1-204ENST00000414963 FBXO33Q7Z6M2 555 aa17.41■□□□□ 0.38
SF3B1-204ENST00000414963 RTFDC1Q9BY42 306 aaPredicted RBP17.41■□□□□ 0.38
SF3B1-204ENST00000414963 PPP1R1BQ9UD71 204 aaPredicted RBP17.41■□□□□ 0.38
SF3B1-204ENST00000414963 SLX4Q8IY92 1834 aa17.41■□□□□ 0.38
SF3B1-204ENST00000414963 UQCRFS1P1P0C7P4 283 aa17.4■□□□□ 0.38
SF3B1-204ENST00000414963 GSPT1P15170 499 aaKnown RBP17.4■□□□□ 0.38
SF3B1-204ENST00000414963 ARID4AP29374 1257 aaPredicted RBP17.4■□□□□ 0.38
SF3B1-204ENST00000414963 SOGA3Q5TF21 947 aa17.4■□□□□ 0.38
SF3B1-204ENST00000414963 CCDC102BQ68D86 513 aa17.4■□□□□ 0.38
SF3B1-204ENST00000414963 FAM84BQ96KN1 310 aaPredicted RBP17.4■□□□□ 0.38
SF3B1-204ENST00000414963 POLLQ9UGP5 575 aa17.4■□□□□ 0.38
SF3B1-204ENST00000414963 LTBP1Q14766 1721 aa17.4■□□□□ 0.38
SF3B1-204ENST00000414963 ARAP2Q8WZ64 1704 aa17.39■□□□□ 0.37
SF3B1-204ENST00000414963 UFL1O94874 794 aa17.39■□□□□ 0.37
SF3B1-204ENST00000414963 PHKA1P46020 1223 aa17.39■□□□□ 0.37
SF3B1-204ENST00000414963 CAVIN4Q5BKX8 364 aa17.39■□□□□ 0.37
SF3B1-204ENST00000414963 OLFM4Q6UX06 510 aa17.39■□□□□ 0.37
SF3B1-204ENST00000414963 DPP8Q6V1X1 898 aaPredicted RBP17.39■□□□□ 0.37
SF3B1-204ENST00000414963 RTKN2Q8IZC4 609 aa17.39■□□□□ 0.37
SF3B1-204ENST00000414963 HAUS7Q99871 368 aa17.39■□□□□ 0.37
SF3B1-204ENST00000414963 C21orf2O43822 256 aa17.38■□□□□ 0.37
SF3B1-204ENST00000414963 BCAMP50895 628 aa17.38■□□□□ 0.37
SF3B1-204ENST00000414963 CCDC93Q567U6 631 aa17.38■□□□□ 0.37
SF3B1-204ENST00000414963 TTC39AQ5SRH9 613 aa17.38■□□□□ 0.37
SF3B1-204ENST00000414963 FHDC1Q9C0D6 1143 aaPredicted RBP17.38■□□□□ 0.37
SF3B1-204ENST00000414963 GNL3LQ9NVN8 582 aaKnown RBP17.38■□□□□ 0.37
SF3B1-204ENST00000414963 MED23Q9ULK4 1368 aa17.38■□□□□ 0.37
SF3B1-204ENST00000414963 C6orf229H3BNL8 230 aa17.37■□□□□ 0.37
SF3B1-204ENST00000414963 SEMA3EO15041 775 aa17.37■□□□□ 0.37
SF3B1-204ENST00000414963 SDSP20132 328 aa17.37■□□□□ 0.37
SF3B1-204ENST00000414963 KLRK1P26718 216 aa17.37■□□□□ 0.37
SF3B1-204ENST00000414963 HIBADHP31937 336 aaKnown RBP17.37■□□□□ 0.37
SF3B1-204ENST00000414963 GYG1P46976 350 aa17.37■□□□□ 0.37
SF3B1-204ENST00000414963 TXNRD3Q86VQ6 643 aa17.37■□□□□ 0.37
SF3B1-204ENST00000414963 TICAM2Q86XR7 235 aa17.37■□□□□ 0.37
SF3B1-204ENST00000414963 PELP1Q8IZL8 1130 aaKnown RBP17.37■□□□□ 0.37
SF3B1-204ENST00000414963 KLHL34Q8N239 644 aa17.37■□□□□ 0.37
SF3B1-204ENST00000414963 NLGN2Q8NFZ4 835 aa17.37■□□□□ 0.37
SF3B1-204ENST00000414963 BOLA2Q9H3K6 86 aa17.37■□□□□ 0.37
SF3B1-204ENST00000414963 DUOX1Q9NRD9 1551 aa17.36■□□□□ 0.37
SF3B1-204ENST00000414963 SUPT20HQ8NEM7 779 aa17.36■□□□□ 0.37
SF3B1-204ENST00000414963 PSMD1Q99460 953 aa17.36■□□□□ 0.37
SF3B1-204ENST00000414963 EYA3Q99504 573 aa17.36■□□□□ 0.37
SF3B1-204ENST00000414963 BRCA1P38398 1863 aaKnown RBP17.35■□□□□ 0.37
SF3B1-204ENST00000414963 MCAMP43121 646 aa17.35■□□□□ 0.37
SF3B1-204ENST00000414963 SCARF1Q14162 830 aa17.35■□□□□ 0.37
SF3B1-204ENST00000414963 ZNF804AQ7Z570 1209 aa17.35■□□□□ 0.37
SF3B1-204ENST00000414963 VPS37DQ86XT2 251 aa17.35■□□□□ 0.37
SF3B1-204ENST00000414963 EVI5LQ96CN4 794 aa17.35■□□□□ 0.37
SF3B1-204ENST00000414963 SYT17Q9BSW7 474 aa17.35■□□□□ 0.37
SF3B1-204ENST00000414963 VPS33BQ9H267 617 aa17.35■□□□□ 0.37
SF3B1-204ENST00000414963 PDS5AQ29RF7 1337 aaKnown RBP17.35■□□□□ 0.37
SF3B1-204ENST00000414963 RASGRF1Q13972 1273 aa17.34■□□□□ 0.37
SF3B1-204ENST00000414963 WASHC4Q2M389 1173 aa17.34■□□□□ 0.37
SF3B1-204ENST00000414963 CNTROBQ8N137 903 aa17.34■□□□□ 0.37
SF3B1-204ENST00000414963 TDRD7Q8NHU6 1098 aaKnown RBP17.34■□□□□ 0.37
SF3B1-204ENST00000414963 ZC3H12CQ9C0D7 883 aaKnown RBP17.34■□□□□ 0.37
SF3B1-204ENST00000414963 HMG20BQ9P0W2 317 aa17.34■□□□□ 0.37
SF3B1-204ENST00000414963 ZNF219Q9P2Y4 722 aaPredicted RBP17.34■□□□□ 0.37
SF3B1-204ENST00000414963 IL1R1P14778 569 aa17.33■□□□□ 0.36
SF3B1-204ENST00000414963 SPATA5Q8NB90 893 aa17.33■□□□□ 0.36
SF3B1-204ENST00000414963 GPR101Q96P66 508 aaPredicted RBP17.33■□□□□ 0.36
SF3B1-204ENST00000414963 COA1Q9GZY4 146 aa17.33■□□□□ 0.36
SF3B1-204ENST00000414963 PAG1Q9NWQ8 432 aa17.33■□□□□ 0.36
SF3B1-204ENST00000414963 DENND2AQ9ULE3 1009 aa17.33■□□□□ 0.36
SF3B1-204ENST00000414963 TRIM6-TRIM34B2RNG4 842 aa17.32■□□□□ 0.36
SF3B1-204ENST00000414963 FKBP4Q02790 459 aaKnown RBP eCLIP17.32■□□□□ 0.36
SF3B1-204ENST00000414963 CD209Q9NNX6 404 aa17.32■□□□□ 0.36
SF3B1-204ENST00000414963 BCS1LQ9Y276 419 aa17.32■□□□□ 0.36
SF3B1-204ENST00000414963 CACNA1SQ13698 1873 aa17.31■□□□□ 0.36
SF3B1-204ENST00000414963 LTBP3Q9NS15 1303 aa17.31■□□□□ 0.36
SF3B1-204ENST00000414963 MAP4K4O95819 1239 aaPredicted RBP17.31■□□□□ 0.36
SF3B1-204ENST00000414963 ZAP70P43403 619 aa17.31■□□□□ 0.36
SF3B1-204ENST00000414963 KIAA2012Q0VF49 1180 aa17.31■□□□□ 0.36
SF3B1-204ENST00000414963 TTF1Q15361 905 aaPredicted RBP17.31■□□□□ 0.36
SF3B1-204ENST00000414963 KBTBD3Q8NAB2 608 aa17.31■□□□□ 0.36
SF3B1-204ENST00000414963 RILPL2Q969X0 211 aa17.31■□□□□ 0.36
SF3B1-204ENST00000414963 DNAJC2Q99543 621 aaKnown RBP17.31■□□□□ 0.36
SF3B1-204ENST00000414963 GOLIM4O00461 696 aa17.3■□□□□ 0.36
SF3B1-204ENST00000414963 CDC45O75419 566 aa17.3■□□□□ 0.36
SF3B1-204ENST00000414963 CYP2E1P05181 493 aaPredicted RBP17.3■□□□□ 0.36
SF3B1-204ENST00000414963 PI16Q6UXB8 463 aa17.3■□□□□ 0.36
SF3B1-204ENST00000414963 SNRKQ9NRH2 765 aa17.3■□□□□ 0.36
SF3B1-204ENST00000414963 RFX7Q2KHR2 1363 aa17.29■□□□□ 0.36
SF3B1-204ENST00000414963 RIMBP2O15034 1052 aa17.29■□□□□ 0.36
SF3B1-204ENST00000414963 IGSF3O75054 1194 aa17.29■□□□□ 0.36
SF3B1-204ENST00000414963 C8orf34Q49A92 452 aa17.29■□□□□ 0.36
SF3B1-204ENST00000414963 PODNQ7Z5L7 613 aa17.29■□□□□ 0.36
SF3B1-204ENST00000414963 EDC3Q96F86 508 aaKnown RBP17.29■□□□□ 0.36
SF3B1-204ENST00000414963 NDUFB9Q9Y6M9 179 aa17.29■□□□□ 0.36
SF3B1-204ENST00000414963 AKAP11Q9UKA4 1901 aa17.29■□□□□ 0.36
SF3B1-204ENST00000414963 FAM205AQ6ZU69 1335 aa17.28■□□□□ 0.36
SF3B1-204ENST00000414963 SALL1Q9NSC2 1324 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms