RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TMEM57Q8N5G2 664 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 ATAD2Q6PL18 1390 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 CDR2Q01850 454 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 BICDL1Q6ZP65 573 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 RHOXF2BP0C7M4 288 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 NOLC1Q14978 699 aaKnown RBP eCLIP15□□□□□ -0.01
CCDC88A-204ENST00000413716 RHOXF2Q9BQY4 288 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 AMOTQ4VCS5 1084 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 MX2P20592 715 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 DBN1Q16643 649 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 TRIM68Q6AZZ1 485 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 NEK11Q8NG66 645 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 ZSCAN16Q9H4T2 348 aaPredicted RBP15□□□□□ -0.01
CCDC88A-204ENST00000413716 GOLGA6CA6NDK9 693 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 BMP15O95972 392 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 GOLGA6DP0CG33 693 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 MX1P20591 662 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 ISM2Q6H9L7 571 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 GOLGA6AQ9NYA3 693 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 AFG3L2Q9Y4W6 797 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 RIOK3O14730 519 aaKnown RBP14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 FYCO1Q9BQS8 1478 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 RRAGBQ5VZM2 374 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 PPME1Q9Y570 386 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 IFIT3O14879 490 aaKnown RBP14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 SPG7Q9UQ90 795 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 ZSCAN23Q3MJ62 389 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 PDZD8Q8NEN9 1154 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 PSMA7O14818 248 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 PRKAR2BP31323 418 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 TCP11L2Q8N4U5 519 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 RASEFQ8IZ41 740 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 KIF1BPQ96EK5 621 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 CCDC42Q96M95 316 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 MYCBPQ99417 103 aaPredicted RBP14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 PDE4BQ07343 736 aa14.99□□□□□ -0.01
CCDC88A-204ENST00000413716 MTHFSP49914 203 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 BTBD11A6QL63 1104 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 ANO6Q4KMQ2 910 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 TNPO1Q92973 898 aaKnown RBP14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 GUCA1BQ9UMX6 200 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 EXOSC9Q06265 439 aaKnown RBP14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 PHLDB3Q6NSJ2 640 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 PPP1R21Q6ZMI0 780 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 MICAL1Q8TDZ2 1067 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 SCHIP1Q9P0W5 487 aaPredicted RBP14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 GIMAP4Q9NUV9 329 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 ORC6Q9Y5N6 252 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 GJB2P29033 226 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 NLRP6P59044 892 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 UBXN1Q04323 297 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 KANK4Q5T7N3 995 aaPredicted RBP14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 UBL4BQ8N7F7 174 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 GTF3C6Q969F1 213 aa14.98□□□□□ -0.01
CCDC88A-204ENST00000413716 TAF7Q15545 349 aaPredicted RBP14.97□□□□□ -0.01
CCDC88A-204ENST00000413716 TRMT1LQ7Z2T5 733 aaKnown RBP14.97□□□□□ -0.01
CCDC88A-204ENST00000413716 CROCCP2Q86T23 111 aa14.97□□□□□ -0.01
CCDC88A-204ENST00000413716 PPP4R1Q8TF05 950 aa14.97□□□□□ -0.01
CCDC88A-204ENST00000413716 FAM204AQ9H8W3 233 aa14.97□□□□□ -0.01
CCDC88A-204ENST00000413716 SMAP1Q8IYB5 467 aaPredicted RBP14.97□□□□□ -0.01
CCDC88A-204ENST00000413716 KIFAP3Q92845 792 aa14.97□□□□□ -0.01
CCDC88A-204ENST00000413716 HSP90AA5PQ58FG0 334 aa14.97□□□□□ -0.01
CCDC88A-204ENST00000413716 DRC3Q9H069 523 aa14.97□□□□□ -0.01
CCDC88A-204ENST00000413716 ADAMTS8Q9UP79 889 aa14.97□□□□□ -0.01
CCDC88A-204ENST00000413716 VSIG1Q86XK7 387 aa14.97□□□□□ -0.01
CCDC88A-204ENST00000413716 LARSQ9P2J5 1176 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-204ENST00000413716 CCT2P78371 535 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-204ENST00000413716 KCNG4Q8TDN1 519 aa14.96□□□□□ -0.01
CCDC88A-204ENST00000413716 FRMD4BQ9Y2L6 1034 aa14.96□□□□□ -0.01
CCDC88A-204ENST00000413716 CCDC122Q5T0U0 273 aa14.96□□□□□ -0.01
CCDC88A-204ENST00000413716 SPDL1Q96EA4 605 aa14.96□□□□□ -0.01
CCDC88A-204ENST00000413716 KAT14Q9H8E8 782 aa14.96□□□□□ -0.01
CCDC88A-204ENST00000413716 SLC5A1P13866 664 aa14.96□□□□□ -0.01
CCDC88A-204ENST00000413716 LRRC23Q53EV4 343 aaPredicted RBP14.96□□□□□ -0.01
CCDC88A-204ENST00000413716 APOEP02649 317 aa14.96□□□□□ -0.01
CCDC88A-204ENST00000413716 METAP2P50579 478 aaKnown RBP eCLIP14.96□□□□□ -0.01
CCDC88A-204ENST00000413716 IFIT1P09914 478 aaKnown RBP14.96□□□□□ -0.02
CCDC88A-204ENST00000413716 MUM1L1Q5H9M0 696 aa14.96□□□□□ -0.02
CCDC88A-204ENST00000413716 PNMA8AQ86V59 439 aaPredicted RBP14.96□□□□□ -0.02
CCDC88A-204ENST00000413716 IFT20Q8IY31 132 aa14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 HELBQ8NG08 1087 aaPredicted RBP14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 TMEM67Q5HYA8 995 aa14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 PAXIP1Q6ZW49 1069 aaPredicted RBP14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 PPP1R9AQ9ULJ8 1098 aa14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 PLEKHH2Q8IVE3 1493 aa14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 MCM7P33993 719 aa14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 RPAINQ86UA6 219 aa14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 BAG5Q9UL15 447 aa14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 CNGA4Q8IV77 575 aa14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 RILPQ96NA2 401 aa14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 SPATS2LQ9NUQ6 558 aaKnown RBP14.95□□□□□ -0.02
CCDC88A-204ENST00000413716 SLC8A3P57103 927 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 LGSNQ5TDP6 509 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 SPC25Q9HBM1 224 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 RPS6KA2Q15349 733 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 BIRC2Q13490 618 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 ZNF428Q96B54 188 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 TSR2Q969E8 191 aaKnown RBP14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 PLCB4Q15147 1175 aa14.94□□□□□ -0.02
CCDC88A-204ENST00000413716 HHATQ5VTY9 493 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms