RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 RAB11FIP3O75154 756 aa36.25■■■■□ 3.39
USP42-202ENST00000404008 TXNRD3Q86VQ6 643 aa36.25■■■■□ 3.39
USP42-202ENST00000404008 LPIN2Q92539 896 aa36.25■■■■□ 3.39
USP42-202ENST00000404008 ATP2B3Q16720 1220 aa36.24■■■■□ 3.39
USP42-202ENST00000404008 ZNF609O15014 1411 aa36.23■■■■□ 3.39
USP42-202ENST00000404008 RWDD1Q9H446 243 aaPredicted RBP36.23■■■■□ 3.39
USP42-202ENST00000404008 AKAP2Q9Y2D5 859 aa36.23■■■■□ 3.39
USP42-202ENST00000404008 RHPN1Q8TCX5 695 aa36.22■■■■□ 3.39
USP42-202ENST00000404008 APBB1O00213 710 aa36.21■■■■□ 3.39
USP42-202ENST00000404008 SLC5A1P13866 664 aa36.21■■■■□ 3.39
USP42-202ENST00000404008 KIF1BPQ96EK5 621 aa36.21■■■■□ 3.39
USP42-202ENST00000404008 GPR108Q9NPR9 543 aa36.21■■■■□ 3.39
USP42-202ENST00000404008 IFIT1P09914 478 aaKnown RBP36.2■■■■□ 3.39
USP42-202ENST00000404008 JDP2Q8WYK2 163 aa36.2■■■■□ 3.39
USP42-202ENST00000404008 A0A1B0GUL7 405 aa36.19■■■■□ 3.38
USP42-202ENST00000404008 IGHDP01880 384 aa36.19■■■■□ 3.38
USP42-202ENST00000404008 NIM1KQ8IY84 436 aa36.19■■■■□ 3.38
USP42-202ENST00000404008 DOK7Q18PE1 504 aa36.18■■■■□ 3.38
USP42-202ENST00000404008 TNNI3KQ59H18 835 aa36.18■■■■□ 3.38
USP42-202ENST00000404008 FPGT-TNNI3KV9GXZ4 949 aa36.18■■■■□ 3.38
USP42-202ENST00000404008 TIMM10P62072 90 aa36.17■■■■□ 3.38
USP42-202ENST00000404008 DBNDD1Q9H9R9 158 aa36.17■■■■□ 3.38
USP42-202ENST00000404008 PSME4Q14997 1843 aa36.17■■■■□ 3.38
USP42-202ENST00000404008 GCC1Q96CN9 775 aa36.16■■■■□ 3.38
USP42-202ENST00000404008 FAM84BQ96KN1 310 aaPredicted RBP36.16■■■■□ 3.38
USP42-202ENST00000404008 SCN9AQ15858 1988 aa36.16■■■■□ 3.38
USP42-202ENST00000404008 ZC3H4Q9UPT8 1303 aaKnown RBP36.16■■■■□ 3.38
USP42-202ENST00000404008 ECE2O60344 883 aa36.15■■■■□ 3.38
USP42-202ENST00000404008 GYG1P46976 350 aa36.15■■■■□ 3.38
USP42-202ENST00000404008 ZNF804AQ7Z570 1209 aa36.15■■■■□ 3.38
USP42-202ENST00000404008 LRRCC1Q9C099 1032 aa36.15■■■■□ 3.38
USP42-202ENST00000404008 COA1Q9GZY4 146 aa36.15■■■■□ 3.38
USP42-202ENST00000404008 ZNRF3Q9ULT6 936 aa36.15■■■■□ 3.38
USP42-202ENST00000404008 G3V3G9 751 aa36.15■■■■□ 3.38
USP42-202ENST00000404008 DCAF8Q5TAQ9 597 aa36.15■■■■□ 3.38
USP42-202ENST00000404008 IL1RAPL2Q9NP60 686 aa36.15■■■■□ 3.38
USP42-202ENST00000404008 FZD9O00144 591 aa36.14■■■■□ 3.38
USP42-202ENST00000404008 ADORA1P30542 326 aa36.14■■■■□ 3.38
USP42-202ENST00000404008 CAVIN4Q5BKX8 364 aa36.14■■■■□ 3.38
USP42-202ENST00000404008 NEUROD6Q96NK8 337 aa36.14■■■■□ 3.38
USP42-202ENST00000404008 ZNF646O15015 1829 aaPredicted RBP36.13■■■■□ 3.37
USP42-202ENST00000404008 YDJCA8MPS7 323 aa36.13■■■■□ 3.37
USP42-202ENST00000404008 HIBADHP31937 336 aaKnown RBP36.13■■■■□ 3.37
USP42-202ENST00000404008 FBXO33Q7Z6M2 555 aa36.13■■■■□ 3.37
USP42-202ENST00000404008 EAF2Q96CJ1 260 aaPredicted RBP36.13■■■■□ 3.37
USP42-202ENST00000404008 XAGE2Q96GT9 111 aa36.13■■■■□ 3.37
USP42-202ENST00000404008 MYH13Q9UKX3 1938 aa36.13■■■■□ 3.37
USP42-202ENST00000404008 PODNQ7Z5L7 613 aa36.12■■■■□ 3.37
USP42-202ENST00000404008 SMC5Q8IY18 1101 aa36.12■■■■□ 3.37
USP42-202ENST00000404008 CD209Q9NNX6 404 aa36.12■■■■□ 3.37
USP42-202ENST00000404008 BCAMP50895 628 aa36.11■■■■□ 3.37
USP42-202ENST00000404008 CLASRPQ8N2M8 674 aaKnown RBP36.11■■■■□ 3.37
USP42-202ENST00000404008 VPS37DQ86XT2 251 aa36.1■■■■□ 3.37
USP42-202ENST00000404008 SMARCA5O60264 1052 aaPredicted RBP36.09■■■■□ 3.37
USP42-202ENST00000404008 IL1R1P14778 569 aa36.09■■■■□ 3.37
USP42-202ENST00000404008 ERICH6BQ5W0A0 696 aa36.09■■■■□ 3.37
USP42-202ENST00000404008 AACSQ86V21 672 aa36.09■■■■□ 3.37
USP42-202ENST00000404008 ZNF541Q9H0D2 1346 aa36.07■■■■□ 3.37
USP42-202ENST00000404008 DBNDD2Q9BQY9 259 aa36.07■■■■□ 3.36
USP42-202ENST00000404008 CCDC8Q9H0W5 538 aaPredicted RBP36.07■■■■□ 3.36
USP42-202ENST00000404008 KCNQ5Q9NR82 932 aa36.07■■■■□ 3.36
USP42-202ENST00000404008 EIF6P56537 245 aaKnown RBP36.06■■■■□ 3.36
USP42-202ENST00000404008 TDRD7Q8NHU6 1098 aaKnown RBP36.06■■■■□ 3.36
USP42-202ENST00000404008 TLR7Q9NYK1 1049 aaKnown RBP36.06■■■■□ 3.36
USP42-202ENST00000404008 DBNLQ9UJU6 430 aaKnown RBP36.06■■■■□ 3.36
USP42-202ENST00000404008 PHKA1P46020 1223 aa36.05■■■■□ 3.36
USP42-202ENST00000404008 CCDC102BQ68D86 513 aa36.05■■■■□ 3.36
USP42-202ENST00000404008 CXCL9Q07325 125 aa36.04■■■■□ 3.36
USP42-202ENST00000404008 GORABQ5T7V8 394 aa36.04■■■■□ 3.36
USP42-202ENST00000404008 BCL11AQ9H165 835 aa36.04■■■■□ 3.36
USP42-202ENST00000404008 RAD17O75943 681 aa36.03■■■■□ 3.36
USP42-202ENST00000404008 ANKRD45Q5TZF3 282 aa36.03■■■■□ 3.36
USP42-202ENST00000404008 IFIT2P09913 472 aaKnown RBP36.02■■■■□ 3.36
USP42-202ENST00000404008 CIAPIN1Q6FI81 312 aa36.02■■■■□ 3.36
USP42-202ENST00000404008 GNL3LQ9NVN8 582 aaKnown RBP36.02■■■■□ 3.36
USP42-202ENST00000404008 IQSEC3Q9UPP2 1182 aaPredicted RBP36.02■■■■□ 3.36
USP42-202ENST00000404008 USP17L3A6NCW0 530 aa36■■■■□ 3.35
USP42-202ENST00000404008 USP17L4A6NCW7 530 aa36■■■■□ 3.35
USP42-202ENST00000404008 ZBTB22O15209 634 aa36■■■■□ 3.35
USP42-202ENST00000404008 TNIP1Q15025 636 aa36■■■■□ 3.35
USP42-202ENST00000404008 B4GALNT3Q6L9W6 998 aa36■■■■□ 3.35
USP42-202ENST00000404008 USP17L1Q7RTZ2 530 aa36■■■■□ 3.35
USP42-202ENST00000404008 COL1A1P02452 1464 aaPredicted RBP35.99■■■■□ 3.35
USP42-202ENST00000404008 PSMD14O00487 310 aa35.99■■■■□ 3.35
USP42-202ENST00000404008 GPC2Q8N158 579 aa35.99■■■■□ 3.35
USP42-202ENST00000404008 GLTPD2A6NH11 291 aa35.98■■■■□ 3.35
USP42-202ENST00000404008 FRAT2O75474 233 aaPredicted RBP35.98■■■■□ 3.35
USP42-202ENST00000404008 GTF2IP78347 998 aa35.98■■■■□ 3.35
USP42-202ENST00000404008 CCDC158Q5M9N0 1113 aa35.98■■■■□ 3.35
USP42-202ENST00000404008 STRIP1Q5VSL9 837 aa35.98■■■■□ 3.35
USP42-202ENST00000404008 DPY19L2Q6NUT2 758 aa35.98■■■■□ 3.35
USP42-202ENST00000404008 ZBTB47Q9UFB7 747 aaPredicted RBP35.98■■■■□ 3.35
USP42-202ENST00000404008 AKAP11Q9UKA4 1901 aa35.98■■■■□ 3.35
USP42-202ENST00000404008 SEMA3EO15041 775 aa35.97■■■■□ 3.35
USP42-202ENST00000404008 ARID4AP29374 1257 aaPredicted RBP35.97■■■■□ 3.35
USP42-202ENST00000404008 NUCB1Q02818 461 aa35.97■■■■□ 3.35
USP42-202ENST00000404008 TTLL5Q6EMB2 1281 aa35.97■■■■□ 3.35
USP42-202ENST00000404008 CCDC136Q96JN2 1154 aa35.97■■■■□ 3.35
USP42-202ENST00000404008 FAM205AQ6ZU69 1335 aa35.97■■■■□ 3.35
USP42-202ENST00000404008 KDM2BQ8NHM5 1336 aa35.97■■■■□ 3.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms