RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 RIC1Q4ADV7 1423 aa11.67□□□□□ -0.54
VPS53-203ENST00000401468 A0A1B0GUL6 1792 aa11.67□□□□□ -0.54
VPS53-203ENST00000401468 ZC3H4Q9UPT8 1303 aaKnown RBP11.66□□□□□ -0.54
VPS53-203ENST00000401468 PSME4Q14997 1843 aa11.66□□□□□ -0.54
VPS53-203ENST00000401468 PI4KAP2A4QPH2 592 aa11.66□□□□□ -0.54
VPS53-203ENST00000401468 ALDH1B1P30837 517 aa11.66□□□□□ -0.54
VPS53-203ENST00000401468 FMR1Q06787 632 aaKnown RBP eCLIP11.66□□□□□ -0.544e-8■■■■■ 46.3
VPS53-203ENST00000401468 TCIRG1Q13488 830 aa11.66□□□□□ -0.54
VPS53-203ENST00000401468 AOC3Q16853 763 aa11.66□□□□□ -0.54
VPS53-203ENST00000401468 PI4KAP1Q8N8J0 262 aa11.66□□□□□ -0.54
VPS53-203ENST00000401468 RBM17Q96I25 401 aaKnown RBP11.66□□□□□ -0.54
VPS53-203ENST00000401468 GPR101Q96P66 508 aaPredicted RBP11.66□□□□□ -0.54
VPS53-203ENST00000401468 CCDC85AQ96PX6 553 aaPredicted RBP11.66□□□□□ -0.54
VPS53-203ENST00000401468 METTL22Q9BUU2 404 aaPredicted RBP11.66□□□□□ -0.54
VPS53-203ENST00000401468 NOB1Q9ULX3 412 aaKnown RBP11.66□□□□□ -0.54
VPS53-203ENST00000401468 IPO8O15397 1037 aaKnown RBP11.65□□□□□ -0.54
VPS53-203ENST00000401468 TRIM27P14373 513 aa11.65□□□□□ -0.54
VPS53-203ENST00000401468 FSTL1Q12841 308 aa11.65□□□□□ -0.54
VPS53-203ENST00000401468 FKBP5Q13451 457 aaPredicted RBP11.65□□□□□ -0.54
VPS53-203ENST00000401468 SOGA3Q5TF21 947 aa11.65□□□□□ -0.54
VPS53-203ENST00000401468 ATF7IPQ6VMQ6 1270 aa11.65□□□□□ -0.54
VPS53-203ENST00000401468 NLRP3Q96P20 1036 aa11.65□□□□□ -0.54
VPS53-203ENST00000401468 ISCA1Q9BUE6 129 aa11.65□□□□□ -0.54
VPS53-203ENST00000401468 API5Q9BZZ5 524 aaKnown RBP11.65□□□□□ -0.54
VPS53-203ENST00000401468 MAP3K2Q9Y2U5 619 aa11.65□□□□□ -0.54
VPS53-203ENST00000401468 HOXA10P31260 410 aaPredicted RBP11.64□□□□□ -0.55
VPS53-203ENST00000401468 PSEN2P49810 448 aa11.64□□□□□ -0.55
VPS53-203ENST00000401468 PARP10Q53GL7 1025 aa11.64□□□□□ -0.55
VPS53-203ENST00000401468 HSP90AB3PQ58FF7 597 aa11.64□□□□□ -0.55
VPS53-203ENST00000401468 BEND3Q5T5X7 828 aa11.64□□□□□ -0.55
VPS53-203ENST00000401468 ZKSCAN2Q63HK3 967 aa11.64□□□□□ -0.55
VPS53-203ENST00000401468 ADGRD1Q6QNK2 874 aa11.64□□□□□ -0.55
VPS53-203ENST00000401468 RTKN2Q8IZC4 609 aa11.64□□□□□ -0.55
VPS53-203ENST00000401468 LARGE2Q8N3Y3 721 aa11.64□□□□□ -0.55
VPS53-203ENST00000401468 DNAAF4Q8WXU2 420 aa11.64□□□□□ -0.55
VPS53-203ENST00000401468 MYD88Q99836 296 aa11.64□□□□□ -0.55
VPS53-203ENST00000401468 ZNF646O15015 1829 aaPredicted RBP11.63□□□□□ -0.55
VPS53-203ENST00000401468 SHTN1A0MZ66 631 aa11.63□□□□□ -0.55
VPS53-203ENST00000401468 PPIP5K2O43314 1243 aa11.63□□□□□ -0.55
VPS53-203ENST00000401468 IGKV5-2P06315 115 aa11.63□□□□□ -0.55
VPS53-203ENST00000401468 MAP1SQ66K74 1059 aaPredicted RBP11.63□□□□□ -0.55
VPS53-203ENST00000401468 INTS3Q68E01 1043 aaKnown RBP11.63□□□□□ -0.55
VPS53-203ENST00000401468 RIC3Q7Z5B4 369 aa11.63□□□□□ -0.55
VPS53-203ENST00000401468 LINS1Q8NG48 757 aa11.63□□□□□ -0.55
VPS53-203ENST00000401468 TAF1DQ9H5J8 278 aaPredicted RBP11.63□□□□□ -0.55
VPS53-203ENST00000401468 MKRN1Q9UHC7 482 aaKnown RBP11.63□□□□□ -0.55
VPS53-203ENST00000401468 UTYO14607 1347 aa11.62□□□□□ -0.55
VPS53-203ENST00000401468 SH3TC1Q8TE82 1336 aa11.62□□□□□ -0.55
VPS53-203ENST00000401468 F6X3S4 739 aa11.62□□□□□ -0.55
VPS53-203ENST00000401468 ALDH1L1O75891 902 aa11.62□□□□□ -0.55
VPS53-203ENST00000401468 EPS15P42566 896 aa11.62□□□□□ -0.55
VPS53-203ENST00000401468 PDE3AQ14432 1141 aa11.62□□□□□ -0.55
VPS53-203ENST00000401468 DMRTA1Q5VZB9 504 aa11.62□□□□□ -0.55
VPS53-203ENST00000401468 ZNF454Q8N9F8 522 aa11.62□□□□□ -0.55
VPS53-203ENST00000401468 CCDC191Q8NCU4 936 aa11.62□□□□□ -0.55
VPS53-203ENST00000401468 CELF1Q92879 486 aaKnown RBP11.62□□□□□ -0.55
VPS53-203ENST00000401468 CRAMP1Q96RY5 1269 aa11.62□□□□□ -0.55
VPS53-203ENST00000401468 NEURL1BA8MQ27 555 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 FZD9O00144 591 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 TNRC18O15417 2968 aaPredicted RBP11.61□□□□□ -0.55
VPS53-203ENST00000401468 RLBP1P12271 317 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 EPHX2P34913 555 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 RRP1P56182 461 aaKnown RBP11.61□□□□□ -0.55
VPS53-203ENST00000401468 MFSD10Q14728 455 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 DDX46Q7L014 1031 aaKnown RBP11.61□□□□□ -0.55
VPS53-203ENST00000401468 JDP2Q8WYK2 163 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 KCNK17Q96T54 332 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 PSMD1Q99460 953 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 SEC31BQ9NQW1 1179 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 HACL1Q9UJ83 578 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 TNNQ9UQP3 1299 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 ATP6V0A2Q9Y487 856 aa11.61□□□□□ -0.55
VPS53-203ENST00000401468 RAD17O75943 681 aa11.6□□□□□ -0.55
VPS53-203ENST00000401468 MS4A1P11836 297 aa11.6□□□□□ -0.55
VPS53-203ENST00000401468 CCT4P50991 539 aaKnown RBP11.6□□□□□ -0.55
VPS53-203ENST00000401468 SLC10A5Q5PT55 438 aa11.6□□□□□ -0.55
VPS53-203ENST00000401468 DPP8Q6V1X1 898 aaPredicted RBP11.6□□□□□ -0.55
VPS53-203ENST00000401468 NIM1KQ8IY84 436 aa11.6□□□□□ -0.55
VPS53-203ENST00000401468 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.6□□□□□ -0.55
VPS53-203ENST00000401468 FRAT1Q92837 279 aaPredicted RBP11.6□□□□□ -0.55
VPS53-203ENST00000401468 IRS4O14654 1257 aaPredicted RBP11.59□□□□□ -0.55
VPS53-203ENST00000401468 CENPBP07199 599 aaPredicted RBP11.59□□□□□ -0.55
VPS53-203ENST00000401468 CASP7P55210 303 aa11.59□□□□□ -0.55
VPS53-203ENST00000401468 EIF6P56537 245 aaKnown RBP11.59□□□□□ -0.55
VPS53-203ENST00000401468 NEXNQ0ZGT2 675 aa11.59□□□□□ -0.55
VPS53-203ENST00000401468 GRAPQ13588 217 aa11.59□□□□□ -0.55
VPS53-203ENST00000401468 GCKRQ14397 625 aa11.59□□□□□ -0.55
VPS53-203ENST00000401468 CWF19L2Q2TBE0 894 aaKnown RBP11.59□□□□□ -0.55
VPS53-203ENST00000401468 DLK2Q6UY11 383 aa11.59□□□□□ -0.55
VPS53-203ENST00000401468 DZIP1LQ8IYY4 767 aaKnown RBP11.59□□□□□ -0.55
VPS53-203ENST00000401468 MPNDQ8N594 471 aa11.59□□□□□ -0.55
VPS53-203ENST00000401468 GRAPLQ8TC17 118 aaPredicted RBP11.59□□□□□ -0.55
VPS53-203ENST00000401468 SRCIN1Q9C0H9 1055 aa11.59□□□□□ -0.55
VPS53-203ENST00000401468 DBNDD1Q9H9R9 158 aa11.59□□□□□ -0.55
VPS53-203ENST00000401468 KCNQ5Q9NR82 932 aa11.59□□□□□ -0.55
VPS53-203ENST00000401468 CASP8AP2Q9UKL3 1982 aa11.59□□□□□ -0.55
VPS53-203ENST00000401468 IQCA1LA6NCM1 817 aa11.58□□□□□ -0.56
VPS53-203ENST00000401468 WTIPA6NIX2 430 aaPredicted RBP11.58□□□□□ -0.56
VPS53-203ENST00000401468 H7C1W4 665 aa11.58□□□□□ -0.56
VPS53-203ENST00000401468 TK2O00142 265 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms