RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 TLR7Q9NYK1 1049 aaKnown RBP11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 CCDC66A2RUB6 948 aa11.57□□□□□ -0.56
PTCHD4-202ENST00000398738 ME1P48163 572 aa11.57□□□□□ -0.56
PTCHD4-202ENST00000398738 ZRSR1Q15695 479 aaKnown RBP11.57□□□□□ -0.56
PTCHD4-202ENST00000398738 SLU7O95391 586 aaKnown RBP11.57□□□□□ -0.56
PTCHD4-202ENST00000398738 PSMA5P28066 241 aa11.57□□□□□ -0.56
PTCHD4-202ENST00000398738 CCDC129Q6ZRS4 1044 aa11.57□□□□□ -0.56
PTCHD4-202ENST00000398738 DNAAF4Q8WXU2 420 aa11.57□□□□□ -0.56
PTCHD4-202ENST00000398738 TIGD1Q96MW7 591 aa11.57□□□□□ -0.56
PTCHD4-202ENST00000398738 PCDHGA4Q9Y5G9 962 aa11.57□□□□□ -0.56
PTCHD4-202ENST00000398738 METP08581 1390 aa11.57□□□□□ -0.56
PTCHD4-202ENST00000398738 ATP7BP35670 1465 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 PDE4CQ08493 712 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 ARSIQ5FYB1 569 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 ZNF589Q86UQ0 364 aaPredicted RBP11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 NOL10Q9BSC4 688 aaKnown RBP11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 EPC1Q9H2F5 836 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 KINO60870 393 aaKnown RBP11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 SNW1Q13573 536 aaKnown RBP11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 CCDC73Q6ZRK6 1079 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 ZNF454Q8N9F8 522 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 SLAIN1Q8ND83 568 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 AOX1Q06278 1338 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 MCM6Q14566 821 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 ARHGAP29Q52LW3 1261 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 CHST3Q7LGC8 479 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 TMC6Q7Z403 805 aa11.56□□□□□ -0.56
PTCHD4-202ENST00000398738 DLG5Q8TDM6 1919 aa11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 TOB2Q14106 344 aaPredicted RBP11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 RNF20Q5VTR2 975 aa11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 TAF3Q5VWG9 929 aa11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 CCAR2Q8N163 923 aaKnown RBP11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 L3MBTL3Q96JM7 780 aaPredicted RBP11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 SEC62Q99442 399 aaKnown RBP11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 ZNF446Q9NWS9 450 aa11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 NEK11Q8NG66 645 aa11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 EAF2Q96CJ1 260 aaPredicted RBP11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 EVI5LQ96CN4 794 aa11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 CDC42BPGQ6DT37 1551 aa11.55□□□□□ -0.56
PTCHD4-202ENST00000398738 RPS6KB1P23443 525 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 GOLGA8FQ08AF8 430 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 GOLGA8DPQ0D2H9 430 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 TEFQ10587 303 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 G3BP1Q13283 466 aaKnown RBP eCLIP11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 IQCB1Q15051 598 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 HSP90AB4PQ58FF6 505 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 HSP90AA4PQ58FG1 418 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 Q6ZUG5 572 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 FSIP1Q8NA03 581 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 ERO1AQ96HE7 468 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 DNAJC2Q99543 621 aaKnown RBP11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 GOLPH3LQ9H4A5 285 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 LGR6Q9HBX8 967 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 NCOA5Q9HCD5 579 aaKnown RBP11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 ZCCHC17Q9NP64 241 aaKnown RBP11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 A0A1B0GVL5 298 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 GNL2Q13823 731 aaKnown RBP11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 SLFNL1Q499Z3 407 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 OTUD7BQ6GQQ9 843 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 RAB11FIP4Q86YS3 637 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 SLC26A8Q96RN1 970 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 DNAI1Q9UI46 699 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 TTC21AQ8NDW8 1320 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 SEC31AO94979 1220 aaKnown RBP11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 CCZ1BP86790 482 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 CCZ1P86791 482 aaPredicted RBP11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 STX1AQ16623 288 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 MAP4K1Q92918 833 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 TM6SF1Q9BZW5 370 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 SNRKQ9NRH2 765 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 IFNKQ9P0W0 207 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 PIK3C2BO00750 1634 aa11.54□□□□□ -0.56
PTCHD4-202ENST00000398738 ELP1O95163 1332 aa11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 URI1O94763 535 aaPredicted RBP11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 SF3A1Q15459 793 aaKnown RBP11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 MAP3K2Q9Y2U5 619 aa11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 HNRNPH2P55795 449 aaKnown RBP11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 BEND3Q5T5X7 828 aa11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 CERS3Q8IU89 383 aa11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 HLA-CQ95604 372 aa11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 IL17RAQ96F46 866 aa11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 USP28Q96RU2 1077 aa11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 SPATA31D1Q6ZQQ2 1576 aa11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 ALKQ9UM73 1620 aa11.53□□□□□ -0.56
PTCHD4-202ENST00000398738 COL9A1P20849 921 aa11.52□□□□□ -0.56
PTCHD4-202ENST00000398738 LMOD1P29536 600 aaPredicted RBP11.52□□□□□ -0.56
PTCHD4-202ENST00000398738 CLCN6P51797 869 aa11.52□□□□□ -0.56
PTCHD4-202ENST00000398738 SYCP1Q15431 976 aa11.52□□□□□ -0.56
PTCHD4-202ENST00000398738 CCDC34Q96HJ3 373 aa11.52□□□□□ -0.56
PTCHD4-202ENST00000398738 TRIM34Q9BYJ4 488 aa11.52□□□□□ -0.56
PTCHD4-202ENST00000398738 SETD1BQ9UPS6 1966 aaKnown RBP11.52□□□□□ -0.56
PTCHD4-202ENST00000398738 HTATSF1O43719 755 aaKnown RBP11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 POLR3DP05423 398 aaPredicted RBP11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 GYS2P54840 703 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 ANKRD1Q15327 319 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 NYAP1Q6ZVC0 841 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 CEP57L1Q8IYX8 460 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 MNS1Q8NEH6 495 aa11.52□□□□□ -0.57
PTCHD4-202ENST00000398738 GPCPD1Q9NPB8 672 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 1680.5 ms