RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 A6NNZ2 444 aa13.4□□□□□ -0.26
SYNPO-202ENST00000394243 TUBB8Q3ZCM7 444 aa13.4□□□□□ -0.26
SYNPO-202ENST00000394243 CCDC38Q502W7 563 aa13.4□□□□□ -0.26
SYNPO-202ENST00000394243 DZIP1Q86YF9 867 aaKnown RBP13.4□□□□□ -0.26
SYNPO-202ENST00000394243 TSGA10Q9BZW7 698 aa13.4□□□□□ -0.26
SYNPO-202ENST00000394243 VAT1LQ9HCJ6 419 aa13.4□□□□□ -0.26
SYNPO-202ENST00000394243 GJC1P36383 396 aa13.4□□□□□ -0.26
SYNPO-202ENST00000394243 RNF168Q8IYW5 571 aaPredicted RBP13.4□□□□□ -0.26
SYNPO-202ENST00000394243 FLIIQ13045 1269 aa13.4□□□□□ -0.27
SYNPO-202ENST00000394243 PPP1R7Q15435 360 aa13.4□□□□□ -0.27
SYNPO-202ENST00000394243 GOLGA6BA6NDN3 693 aa13.39□□□□□ -0.27
SYNPO-202ENST00000394243 SF3A3Q12874 501 aaKnown RBP eCLIP13.39□□□□□ -0.27
SYNPO-202ENST00000394243 CAPN7Q9Y6W3 813 aa13.39□□□□□ -0.27
SYNPO-202ENST00000394243 PPP1R42Q7Z4L9 355 aa13.39□□□□□ -0.27
SYNPO-202ENST00000394243 CNGA4Q8IV77 575 aa13.39□□□□□ -0.27
SYNPO-202ENST00000394243 ARL1P40616 181 aaPredicted RBP13.39□□□□□ -0.27
SYNPO-202ENST00000394243 AP1ARQ63HQ0 302 aa13.39□□□□□ -0.27
SYNPO-202ENST00000394243 CUL5Q93034 780 aa13.39□□□□□ -0.27
SYNPO-202ENST00000394243 MFSD6Q6ZSS7 791 aa13.39□□□□□ -0.27
SYNPO-202ENST00000394243 NPHP3Q7Z494 1330 aa13.39□□□□□ -0.27
SYNPO-202ENST00000394243 CASQ2O14958 399 aaPredicted RBP13.38□□□□□ -0.27
SYNPO-202ENST00000394243 PEX19P40855 299 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 PDE1AP54750 535 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 AK2P54819 239 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 WHAMMP3Q1A5X7 153 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 NEK11Q8NG66 645 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 TACO1Q9BSH4 297 aaKnown RBP13.38□□□□□ -0.27
SYNPO-202ENST00000394243 TMCO4Q5TGY1 634 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 GKAP1Q5VSY0 366 aaPredicted RBP13.38□□□□□ -0.27
SYNPO-202ENST00000394243 C16orf71Q8IYS4 520 aaPredicted RBP13.38□□□□□ -0.27
SYNPO-202ENST00000394243 CAVIN4Q5BKX8 364 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 C8orf74Q6P047 294 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 ERCC3P19447 782 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 ZNF131P52739 623 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 ASIC1P78348 528 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 PLCB3Q01970 1234 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 SNRKQ9NRH2 765 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 E7EVH7 732 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 GIGYF1O75420 1035 aaPredicted RBP13.38□□□□□ -0.27
SYNPO-202ENST00000394243 DMTNQ08495 405 aa13.38□□□□□ -0.27
SYNPO-202ENST00000394243 ZBTB43O43298 467 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 CFAP157Q5JU67 520 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 CCDC26Q8TAB7 109 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 TTC21AQ8NDW8 1320 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 RTEL1-TNFRSF6BF6WH68 1400 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 ERICH3Q5RHP9 1530 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 CCDC174Q6PII3 467 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 BMP15O95972 392 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 ATP5DP30049 168 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 ZNF75DP51815 510 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 IFIT5Q13325 482 aaKnown RBP13.37□□□□□ -0.27
SYNPO-202ENST00000394243 RNF10Q8N5U6 811 aaKnown RBP13.37□□□□□ -0.27
SYNPO-202ENST00000394243 MRVI1Q9Y6F6 885 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 TBCAO75347 108 aaKnown RBP13.37□□□□□ -0.27
SYNPO-202ENST00000394243 NBPF7P0C2Y1 421 aaPredicted RBP13.37□□□□□ -0.27
SYNPO-202ENST00000394243 EEF2P13639 858 aaKnown RBP13.37□□□□□ -0.27
SYNPO-202ENST00000394243 ZNF445P59923 1031 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 CALCOCO2Q13137 446 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 TUBB2AQ13885 445 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 DIXDC1Q155Q3 683 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 TUBB2BQ9BVA1 445 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 SUDS3Q9H7L9 328 aaPredicted RBP13.37□□□□□ -0.27
SYNPO-202ENST00000394243 CCT6AP40227 531 aaKnown RBP13.37□□□□□ -0.27
SYNPO-202ENST00000394243 RNASE9P60153 205 aaKnown RBP13.37□□□□□ -0.27
SYNPO-202ENST00000394243 MYL5Q02045 173 aa13.37□□□□□ -0.27
SYNPO-202ENST00000394243 UTP14CQ5TAP6 766 aaKnown RBP13.37□□□□□ -0.27
SYNPO-202ENST00000394243 VSIG1Q86XK7 387 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 TXNDC9O14530 226 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 MCUR1Q96AQ8 359 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 CRACR2BQ8N4Y2 399 aaPredicted RBP13.36□□□□□ -0.27
SYNPO-202ENST00000394243 INTS4Q96HW7 963 aaKnown RBP13.36□□□□□ -0.27
SYNPO-202ENST00000394243 GBP5Q96PP8 586 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 SYNCQ9H7C4 482 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 CEP128Q6ZU80 1094 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.36□□□□□ -0.27
SYNPO-202ENST00000394243 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.36□□□□□ -0.27
SYNPO-202ENST00000394243 ARAP1Q96P48 1450 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 CCDC170Q8IYT3 715 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 FYB2Q5VWT5 728 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 TRIM68Q6AZZ1 485 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 KAT14Q9H8E8 782 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 STK38LQ9Y2H1 464 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 ARHGAP5Q13017 1502 aa13.36□□□□□ -0.27
SYNPO-202ENST00000394243 A0A1B0GVL5 298 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 IFT20Q8IY31 132 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 FRMD3A2A2Y4 597 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 WTAPQ15007 396 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 NUTM2AQ8IVF1 878 aaPredicted RBP13.35□□□□□ -0.27
SYNPO-202ENST00000394243 IGSF22Q8N9C0 903 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 RHPN1Q8TCX5 695 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 LRRC45Q96CN5 670 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 ATAD2Q6PL18 1390 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 SLC5A1P13866 664 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 CBX8Q9HC52 389 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 IGF1RP08069 1367 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 LIG3P49916 1009 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 TOM1L2Q6ZVM7 507 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 ANKRD24Q8TF21 1146 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 RIPOR2Q9Y4F9 1068 aa13.35□□□□□ -0.27
SYNPO-202ENST00000394243 TSPY2A6NKD2 308 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms