RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 NLGN1Q8N2Q7 840 aa10.4□□□□□ -0.75
TDP1-203ENST00000393454 ZNF512BQ96KM6 892 aaPredicted RBP10.4□□□□□ -0.75
TDP1-203ENST00000393454 SEC62Q99442 399 aaKnown RBP10.4□□□□□ -0.75
TDP1-203ENST00000393454 SLKQ9H2G2 1235 aaPredicted RBP10.4□□□□□ -0.75
TDP1-203ENST00000393454 POLRMTO00411 1230 aaKnown RBP10.39□□□□□ -0.75
TDP1-203ENST00000393454 CD2BP2O95400 341 aaKnown RBP10.39□□□□□ -0.75
TDP1-203ENST00000393454 BCAMP50895 628 aa10.39□□□□□ -0.75
TDP1-203ENST00000393454 NEK4P51957 841 aa10.39□□□□□ -0.75
TDP1-203ENST00000393454 SLFNL1Q499Z3 407 aa10.39□□□□□ -0.75
TDP1-203ENST00000393454 PRPF40BQ6NWY9 871 aaKnown RBP10.39□□□□□ -0.75
TDP1-203ENST00000393454 CCDC129Q6ZRS4 1044 aa10.39□□□□□ -0.75
TDP1-203ENST00000393454 ARAP2Q8WZ64 1704 aa10.39□□□□□ -0.75
TDP1-203ENST00000393454 HSP90AA1P07900 732 aaKnown RBP10.38□□□□□ -0.75
TDP1-203ENST00000393454 ARID4AP29374 1257 aaPredicted RBP10.38□□□□□ -0.75
TDP1-203ENST00000393454 UBE4AQ14139 1066 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 TTF1Q15361 905 aaPredicted RBP10.38□□□□□ -0.75
TDP1-203ENST00000393454 WASHC4Q2M389 1173 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 ANKRD2Q9GZV1 360 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 HELLSQ9NRZ9 838 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 RBM8AQ9Y5S9 174 aaKnown RBP10.38□□□□□ -0.75
TDP1-203ENST00000393454 SNX14Q9Y5W7 946 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 MED23Q9ULK4 1368 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 K7ELQ4 463 aaPredicted RBP10.38□□□□□ -0.75
TDP1-203ENST00000393454 GRAPQ13588 217 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 ZMYM1Q5SVZ6 1142 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 MSL1Q68DK7 614 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 TICAM2Q86XR7 235 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 VPS37DQ86XT2 251 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 SPATA5Q8NB90 893 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 GRAPLQ8TC17 118 aaPredicted RBP10.38□□□□□ -0.75
TDP1-203ENST00000393454 RBM17Q96I25 401 aaKnown RBP10.38□□□□□ -0.75
TDP1-203ENST00000393454 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.38□□□□□ -0.75
TDP1-203ENST00000393454 HMG20BQ9P0W2 317 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 AKAP11Q9UKA4 1901 aa10.38□□□□□ -0.75
TDP1-203ENST00000393454 RGPD3A6NKT7 1758 aaPredicted RBP10.37□□□□□ -0.75
TDP1-203ENST00000393454 RGPD4Q7Z3J3 1758 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 WTIPA6NIX2 430 aaPredicted RBP10.37□□□□□ -0.75
TDP1-203ENST00000393454 IDH1O75874 414 aaKnown RBP10.37□□□□□ -0.75
TDP1-203ENST00000393454 CYP2E1P05181 493 aaPredicted RBP10.37□□□□□ -0.75
TDP1-203ENST00000393454 ZFYP08048 801 aaPredicted RBP10.37□□□□□ -0.75
TDP1-203ENST00000393454 GYG1P46976 350 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 CAVIN4Q5BKX8 364 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 ZSCAN25Q6NSZ9 544 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 RASEFQ8IZ41 740 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 MAP4K1Q92918 833 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 CAMKK2Q96RR4 588 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 PIH1D3Q9NQM4 214 aaKnown RBP10.37□□□□□ -0.75
TDP1-203ENST00000393454 GNL3LQ9NVN8 582 aaKnown RBP10.37□□□□□ -0.75
TDP1-203ENST00000393454 STK32BQ9NY57 414 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 PNPLA7Q6ZV29 1317 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 A0A1B0GUL6 1792 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 ZKSCAN1P17029 563 aaPredicted RBP10.37□□□□□ -0.75
TDP1-203ENST00000393454 RASGRF1Q13972 1273 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 CREB3L3Q68CJ9 461 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 UPF3BQ9BZI7 483 aaKnown RBP10.37□□□□□ -0.75
TDP1-203ENST00000393454 ANKIB1Q9P2G1 1089 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 IQSEC3Q9UPP2 1182 aaPredicted RBP10.37□□□□□ -0.75
TDP1-203ENST00000393454 PARP3Q9Y6F1 533 aa10.37□□□□□ -0.75
TDP1-203ENST00000393454 M0R2C6 588 aa10.36□□□□□ -0.75
TDP1-203ENST00000393454 MMP10P09238 476 aa10.36□□□□□ -0.75
TDP1-203ENST00000393454 BAG6P46379 1132 aa10.36□□□□□ -0.75
TDP1-203ENST00000393454 NECTIN1Q15223 517 aa10.36□□□□□ -0.75
TDP1-203ENST00000393454 SLC15A2Q16348 729 aa10.36□□□□□ -0.75
TDP1-203ENST00000393454 SLC9C2Q5TAH2 1124 aa10.36□□□□□ -0.75
TDP1-203ENST00000393454 RNF20Q5VTR2 975 aa10.36□□□□□ -0.75
TDP1-203ENST00000393454 FOXD4L1Q9NU39 408 aa10.36□□□□□ -0.75
TDP1-203ENST00000393454 MYH7P12883 1935 aa10.36□□□□□ -0.75
TDP1-203ENST00000393454 SLC27A2O14975 620 aa10.35□□□□□ -0.75
TDP1-203ENST00000393454 FRAT2O75474 233 aaPredicted RBP10.35□□□□□ -0.75
TDP1-203ENST00000393454 NOL8Q76FK4 1167 aaKnown RBP10.35□□□□□ -0.75
TDP1-203ENST00000393454 OSBP2Q969R2 916 aa10.35□□□□□ -0.75
TDP1-203ENST00000393454 ANO8Q9HCE9 1232 aaPredicted RBP10.35□□□□□ -0.75
TDP1-203ENST00000393454 U3KPZ7 1027 aaPredicted RBP10.35□□□□□ -0.75
TDP1-203ENST00000393454 MAST3O60307 1309 aa10.35□□□□□ -0.75
TDP1-203ENST00000393454 MYO5AQ9Y4I1 1855 aaKnown RBP10.35□□□□□ -0.75
TDP1-203ENST00000393454 CASTP20810 708 aaKnown RBP10.35□□□□□ -0.75
TDP1-203ENST00000393454 CRY2Q49AN0 593 aa10.35□□□□□ -0.75
TDP1-203ENST00000393454 APPBP2Q92624 585 aa10.35□□□□□ -0.75
TDP1-203ENST00000393454 JAKMIP1Q96N16 626 aaKnown RBP10.35□□□□□ -0.75
TDP1-203ENST00000393454 ZNF804BA4D1E1 1349 aa10.35□□□□□ -0.75
TDP1-203ENST00000393454 MAP3K12Q12852 859 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 VPS53Q5VIR6 699 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 DEFB132Q7Z7B7 95 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 IL17RAQ96F46 866 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 FAM84BQ96KN1 310 aaPredicted RBP10.34□□□□□ -0.75
TDP1-203ENST00000393454 BRIP1Q9BX63 1249 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 LRP2BPQ9P2M1 347 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 WWC3Q9ULE0 1092 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 ZNF532Q9HCE3 1301 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 PDE6AP16499 860 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 KLRK1P26718 216 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 HIBADHP31937 336 aaKnown RBP10.34□□□□□ -0.75
TDP1-203ENST00000393454 ADD2P35612 726 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 MCM2P49736 904 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 ILDR2Q71H61 639 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 KCNB2Q92953 911 aa10.34□□□□□ -0.75
TDP1-203ENST00000393454 PUS7LQ9H0K6 701 aaKnown RBP10.34□□□□□ -0.75
TDP1-203ENST00000393454 XDHP47989 1333 aa10.33□□□□□ -0.76
TDP1-203ENST00000393454 BBOX1O75936 387 aa10.33□□□□□ -0.76
TDP1-203ENST00000393454 HSPD1P10809 573 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms