RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 LRRC24Q50LG9 513 aa20.77■□□□□ 0.92
SQSTM1-202ENST00000389805 LARP1BQ659C4 914 aaKnown RBP20.77■□□□□ 0.92
SQSTM1-202ENST00000389805 ATG9AQ7Z3C6 839 aa20.77■□□□□ 0.92
SQSTM1-202ENST00000389805 CCDC85AQ96PX6 553 aaPredicted RBP20.77■□□□□ 0.92
SQSTM1-202ENST00000389805 CWC25Q9NXE8 425 aaPredicted RBP20.77■□□□□ 0.92
SQSTM1-202ENST00000389805 AFDNP55196 1824 aaKnown RBP20.77■□□□□ 0.92
SQSTM1-202ENST00000389805 IL2RBP14784 551 aa20.76■□□□□ 0.91
SQSTM1-202ENST00000389805 KRT85P78386 507 aa20.76■□□□□ 0.91
SQSTM1-202ENST00000389805 ZSCAN31Q96LW9 406 aaPredicted RBP20.76■□□□□ 0.91
SQSTM1-202ENST00000389805 ZNF165P49910 485 aa20.76■□□□□ 0.91
SQSTM1-202ENST00000389805 FBXO38Q6PIJ6 1188 aa20.76■□□□□ 0.91
SQSTM1-202ENST00000389805 SH2B1Q9NRF2 756 aaPredicted RBP20.76■□□□□ 0.91
SQSTM1-202ENST00000389805 ZNF335Q9H4Z2 1342 aaPredicted RBP20.76■□□□□ 0.91
SQSTM1-202ENST00000389805 EVA1CP58658 441 aa20.76■□□□□ 0.91
SQSTM1-202ENST00000389805 PLA2G4DQ86XP0 818 aa20.76■□□□□ 0.91
SQSTM1-202ENST00000389805 PKD1L3Q7Z443 1732 aa20.75■□□□□ 0.91
SQSTM1-202ENST00000389805 PSMA5P28066 241 aa20.75■□□□□ 0.91
SQSTM1-202ENST00000389805 TOB2Q14106 344 aaPredicted RBP20.75■□□□□ 0.91
SQSTM1-202ENST00000389805 RNF20Q5VTR2 975 aa20.75■□□□□ 0.91
SQSTM1-202ENST00000389805 PUS3Q9BZE2 481 aaKnown RBP20.75■□□□□ 0.91
SQSTM1-202ENST00000389805 ARFGEF2Q9Y6D5 1785 aa20.75■□□□□ 0.91
SQSTM1-202ENST00000389805 ERVV-2B6SEH9 535 aa20.75■□□□□ 0.91
SQSTM1-202ENST00000389805 RPS6KB1P23443 525 aa20.75■□□□□ 0.91
SQSTM1-202ENST00000389805 GLI3P10071 1580 aa20.75■□□□□ 0.91
SQSTM1-202ENST00000389805 GOLIM4O00461 696 aa20.74■□□□□ 0.91
SQSTM1-202ENST00000389805 ZNF397Q8NF99 534 aaPredicted RBP20.74■□□□□ 0.91
SQSTM1-202ENST00000389805 HAUS7Q99871 368 aa20.74■□□□□ 0.91
SQSTM1-202ENST00000389805 ZNF609O15014 1411 aa20.74■□□□□ 0.91
SQSTM1-202ENST00000389805 CCDC66A2RUB6 948 aa20.74■□□□□ 0.91
SQSTM1-202ENST00000389805 SYTL4Q96C24 671 aaPredicted RBP20.74■□□□□ 0.91
SQSTM1-202ENST00000389805 LRRC2Q9BYS8 371 aa20.73■□□□□ 0.91
SQSTM1-202ENST00000389805 A0A087WWV3 80 aa20.73■□□□□ 0.91
SQSTM1-202ENST00000389805 NR1I2O75469 434 aa20.73■□□□□ 0.91
SQSTM1-202ENST00000389805 RBM6P78332 1123 aaKnown RBP20.73■□□□□ 0.91
SQSTM1-202ENST00000389805 PTPN14Q15678 1187 aa20.73■□□□□ 0.91
SQSTM1-202ENST00000389805 FILIP1Q7Z7B0 1213 aa20.73■□□□□ 0.91
SQSTM1-202ENST00000389805 COL5A2P05997 1499 aaPredicted RBP20.73■□□□□ 0.91
SQSTM1-202ENST00000389805 SOS2Q07890 1332 aaPredicted RBP20.73■□□□□ 0.91
SQSTM1-202ENST00000389805 TIGD1Q96MW7 591 aa20.73■□□□□ 0.91
SQSTM1-202ENST00000389805 BICD2Q8TD16 824 aa20.72■□□□□ 0.91
SQSTM1-202ENST00000389805 SPATA32Q96LK8 384 aa20.72■□□□□ 0.91
SQSTM1-202ENST00000389805 ASAP1Q9ULH1 1129 aa20.72■□□□□ 0.91
SQSTM1-202ENST00000389805 CARD10Q9BWT7 1032 aa20.72■□□□□ 0.91
SQSTM1-202ENST00000389805 A0A0G2JLW4 131 aa20.71■□□□□ 0.91
SQSTM1-202ENST00000389805 CYP21A2P08686 494 aa20.71■□□□□ 0.91
SQSTM1-202ENST00000389805 MCMDC2Q4G0Z9 681 aa20.71■□□□□ 0.91
SQSTM1-202ENST00000389805 LRRC8AQ8IWT6 810 aa20.71■□□□□ 0.91
SQSTM1-202ENST00000389805 ABCC6O95255 1503 aa20.71■□□□□ 0.91
SQSTM1-202ENST00000389805 SKILP12757 684 aa20.7■□□□□ 0.9
SQSTM1-202ENST00000389805 NKX1-1Q15270 411 aaPredicted RBP20.7■□□□□ 0.9
SQSTM1-202ENST00000389805 USPL1Q5W0Q7 1092 aa20.7■□□□□ 0.9
SQSTM1-202ENST00000389805 GTF3C6Q969F1 213 aa20.7■□□□□ 0.9
SQSTM1-202ENST00000389805 SYNE4Q8N205 404 aa20.7■□□□□ 0.9
SQSTM1-202ENST00000389805 FBXW7Q969H0 707 aa20.7■□□□□ 0.9
SQSTM1-202ENST00000389805 KBTBD3Q8NAB2 608 aa20.7■□□□□ 0.9
SQSTM1-202ENST00000389805 CCDC191Q8NCU4 936 aa20.7■□□□□ 0.9
SQSTM1-202ENST00000389805 TDRD7Q8NHU6 1098 aaKnown RBP20.7■□□□□ 0.9
SQSTM1-202ENST00000389805 XIRP1Q702N8 1843 aaKnown RBP20.7■□□□□ 0.9
SQSTM1-202ENST00000389805 FAM89AQ96GI7 184 aa20.69■□□□□ 0.9
SQSTM1-202ENST00000389805 NEK1Q96PY6 1258 aa20.69■□□□□ 0.9
SQSTM1-202ENST00000389805 DNAJC10Q8IXB1 793 aa20.69■□□□□ 0.9
SQSTM1-202ENST00000389805 PAG1Q9NWQ8 432 aa20.69■□□□□ 0.9
SQSTM1-202ENST00000389805 EYA2O00167 538 aa20.68■□□□□ 0.9
SQSTM1-202ENST00000389805 JAK2O60674 1132 aa20.68■□□□□ 0.9
SQSTM1-202ENST00000389805 JCADQ9P266 1359 aa20.68■□□□□ 0.9
SQSTM1-202ENST00000389805 A0A1B0GUL7 405 aa20.68■□□□□ 0.9
SQSTM1-202ENST00000389805 CEBPZQ03701 1054 aaKnown RBP20.68■□□□□ 0.9
SQSTM1-202ENST00000389805 TSGA10IPQ3SY00 556 aa20.68■□□□□ 0.9
SQSTM1-202ENST00000389805 STOX1Q6ZVD7 989 aa20.68■□□□□ 0.9
SQSTM1-202ENST00000389805 ZNF446Q9NWS9 450 aa20.68■□□□□ 0.9
SQSTM1-202ENST00000389805 TMOD3Q9NYL9 352 aa20.68■□□□□ 0.9
SQSTM1-202ENST00000389805 HMG20BQ9P0W2 317 aa20.68■□□□□ 0.9
SQSTM1-202ENST00000389805 KCPQ6ZWJ8 1503 aa20.68■□□□□ 0.9
SQSTM1-202ENST00000389805 GOLGA6L19H0YKK7 550 aa20.67■□□□□ 0.9
SQSTM1-202ENST00000389805 Q6ZUG5 572 aa20.67■□□□□ 0.9
SQSTM1-202ENST00000389805 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.67■□□□□ 0.9
SQSTM1-202ENST00000389805 IL15P40933 162 aaPredicted RBP20.67■□□□□ 0.9
SQSTM1-202ENST00000389805 PIGBQ92521 554 aa20.67■□□□□ 0.9
SQSTM1-202ENST00000389805 CLSTN2Q9H4D0 955 aa20.67■□□□□ 0.9
SQSTM1-202ENST00000389805 KAT6BQ8WYB5 2073 aa20.67■□□□□ 0.9
SQSTM1-202ENST00000389805 PPFIA3O75145 1194 aa20.67■□□□□ 0.9
SQSTM1-202ENST00000389805 ANKRD1Q15327 319 aa20.66■□□□□ 0.9
SQSTM1-202ENST00000389805 LEO1Q8WVC0 666 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-202ENST00000389805 ERCC6LQ2NKX8 1250 aa20.66■□□□□ 0.9
SQSTM1-202ENST00000389805 C11orf57Q6ZUT1 292 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-202ENST00000389805 LRRN4CLQ8ND94 238 aa20.66■□□□□ 0.9
SQSTM1-202ENST00000389805 DDX11Q96FC9 970 aa20.66■□□□□ 0.9
SQSTM1-202ENST00000389805 PGBD1Q96JS3 809 aa20.66■□□□□ 0.9
SQSTM1-202ENST00000389805 CCDC69A6NI79 296 aa20.65■□□□□ 0.9
SQSTM1-202ENST00000389805 IFIT1P09914 478 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-202ENST00000389805 CAPN2P17655 700 aa20.65■□□□□ 0.9
SQSTM1-202ENST00000389805 FKBP4Q02790 459 aaKnown RBP eCLIP20.65■□□□□ 0.91e-6■■□□□ 13.4
SQSTM1-202ENST00000389805 PLEKHG2Q9H7P9 1386 aa20.65■□□□□ 0.9
SQSTM1-202ENST00000389805 ADORA1P30542 326 aa20.65■□□□□ 0.9
SQSTM1-202ENST00000389805 BRF1Q92994 677 aa20.65■□□□□ 0.9
SQSTM1-202ENST00000389805 DDX19AQ9NUU7 478 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-202ENST00000389805 U3KPZ7 1027 aaPredicted RBP20.65■□□□□ 0.9
SQSTM1-202ENST00000389805 HSP90B1P14625 803 aaKnown RBP20.64■□□□□ 0.9
SQSTM1-202ENST00000389805 TCIRG1Q13488 830 aa20.64■□□□□ 0.9
SQSTM1-202ENST00000389805 ERO1AQ96HE7 468 aa20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms