RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 TTC12Q9H892 705 aaPredicted RBP14.07□□□□□ -0.16
CHD3-203ENST00000380358 PARP3Q9Y6F1 533 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 ESPNB1AK53 854 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 STK25O00506 426 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 TTC30AQ86WT1 665 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 NME9Q86XW9 330 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 FAM200AQ8TCP9 573 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 ZBTB24O43167 697 aaPredicted RBP14.07□□□□□ -0.16
CHD3-203ENST00000380358 UBLCP1Q8WVY7 318 aaPredicted RBP14.07□□□□□ -0.16
CHD3-203ENST00000380358 PLVAPQ9BX97 442 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 GPCPD1Q9NPB8 672 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 FRMD4BQ9Y2L6 1034 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 NIP7Q9Y221 180 aaKnown RBP eCLIP14.07□□□□□ -0.16
CHD3-203ENST00000380358 RAPGEF2Q9Y4G8 1499 aa14.07□□□□□ -0.16
CHD3-203ENST00000380358 CCDC172P0C7W6 258 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 RFC1P35251 1148 aaPredicted RBP14.06□□□□□ -0.16
CHD3-203ENST00000380358 CCDC24Q8N4L8 307 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 STX1AQ16623 288 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 DNAAF4Q8WXU2 420 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 SYKP43405 635 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 NCOA7Q8NI08 942 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 USTQ9Y2C2 406 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 PPFIA1Q13136 1202 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 CCDC152Q4G0S7 254 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 ALG1Q9BT22 464 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 CASC4Q6P4E1 433 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 TBC1D31Q96DN5 1066 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 LIMCH1Q9UPQ0 1083 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 KRT19P08727 400 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 GSTO1P78417 241 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 SLC39A6Q13433 755 aa14.06□□□□□ -0.16
CHD3-203ENST00000380358 TMPOP42166 694 aaKnown RBP14.05□□□□□ -0.16
CHD3-203ENST00000380358 NFE2L2Q16236 605 aa14.05□□□□□ -0.16
CHD3-203ENST00000380358 LEO1Q8WVC0 666 aaPredicted RBP14.05□□□□□ -0.16
CHD3-203ENST00000380358 CCDC14Q49A88 953 aa14.05□□□□□ -0.16
CHD3-203ENST00000380358 NAA16Q6N069 864 aaPredicted RBP14.05□□□□□ -0.16
CHD3-203ENST00000380358 CCDC102BQ68D86 513 aa14.05□□□□□ -0.16
CHD3-203ENST00000380358 KRT28Q7Z3Y7 464 aa14.05□□□□□ -0.16
CHD3-203ENST00000380358 SCAND2PQ9GZW5 306 aaPredicted RBP14.05□□□□□ -0.16
CHD3-203ENST00000380358 ATP2A1O14983 1001 aa14.05□□□□□ -0.16
CHD3-203ENST00000380358 FBLN1P23142 703 aa14.05□□□□□ -0.16
CHD3-203ENST00000380358 KCNH5Q8NCM2 988 aa14.05□□□□□ -0.16
CHD3-203ENST00000380358 NSRP1Q9H0G5 558 aaKnown RBP14.05□□□□□ -0.16
CHD3-203ENST00000380358 PTPDC1A2A3K4 754 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 USP37Q86T82 979 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 PLEKHA4Q9H4M7 779 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 ABCF3Q9NUQ8 709 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 MICALL1Q8N3F8 863 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 NEK1Q96PY6 1258 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 CACYBPQ9HB71 228 aaKnown RBP14.04□□□□□ -0.16
CHD3-203ENST00000380358 HMGB1P09429 215 aaKnown RBP14.04□□□□□ -0.16
CHD3-203ENST00000380358 RHOXF2BP0C7M4 288 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 SKA2Q8WVK7 121 aaPredicted RBP14.04□□□□□ -0.16
CHD3-203ENST00000380358 RHOXF2Q9BQY4 288 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 GUCA1BQ9UMX6 200 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 RTN1Q16799 776 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 DCLK2Q8N568 766 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 WHAMMQ8TF30 809 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 ZC3H12CQ9C0D7 883 aaKnown RBP14.04□□□□□ -0.16
CHD3-203ENST00000380358 NOP56O00567 594 aaKnown RBP14.04□□□□□ -0.16
CHD3-203ENST00000380358 XRCC6P12956 609 aaKnown RBP eCLIP14.04□□□□□ -0.16
CHD3-203ENST00000380358 SARNPP82979 210 aaKnown RBP14.04□□□□□ -0.16
CHD3-203ENST00000380358 FNBP1Q96RU3 617 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 FAM204AQ9H8W3 233 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 MCM9Q9NXL9 1143 aa14.04□□□□□ -0.16
CHD3-203ENST00000380358 CEP120Q8N960 986 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 INF2Q27J81 1249 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 TMTC4Q5T4D3 741 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 FAM114A2Q9NRY5 505 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 ANKRD30BQ9BXX2 1392 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 UBXN1Q04323 297 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 LZTFL1Q9NQ48 299 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 PICK1Q9NRD5 415 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 SFMBT1Q9UHJ3 866 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 GIPC1O14908 333 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 GOLGA1Q92805 767 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 CCDC77Q9BR77 488 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 FAM83GA6ND36 823 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 WDR46O15213 610 aaKnown RBP14.03□□□□□ -0.16
CHD3-203ENST00000380358 CEP85LQ5SZL2 805 aa14.03□□□□□ -0.16
CHD3-203ENST00000380358 ZBTB43O43298 467 aa14.02□□□□□ -0.16
CHD3-203ENST00000380358 CCDC110Q8TBZ0 833 aa14.02□□□□□ -0.16
CHD3-203ENST00000380358 DNAI1Q9UI46 699 aa14.02□□□□□ -0.16
CHD3-203ENST00000380358 GBP7Q8N8V2 638 aaPredicted RBP14.02□□□□□ -0.16
CHD3-203ENST00000380358 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.02□□□□□ -0.16
CHD3-203ENST00000380358 RAD51AP2Q09MP3 1159 aa14.02□□□□□ -0.16
CHD3-203ENST00000380358 MAGEB6Q8N7X4 407 aa14.02□□□□□ -0.16
CHD3-203ENST00000380358 EMILIN1Q9Y6C2 1016 aa14.02□□□□□ -0.16
CHD3-203ENST00000380358 MAGEB6P1A0A0J9YX57 407 aa14.02□□□□□ -0.17
CHD3-203ENST00000380358 GOLGA6L9A6NEM1 432 aa14.02□□□□□ -0.17
CHD3-203ENST00000380358 NBPF7P0C2Y1 421 aaPredicted RBP14.02□□□□□ -0.17
CHD3-203ENST00000380358 GOLGA6CA6NDK9 693 aa14.02□□□□□ -0.17
CHD3-203ENST00000380358 GOLGA6BA6NDN3 693 aa14.02□□□□□ -0.17
CHD3-203ENST00000380358 GOLGA6DP0CG33 693 aa14.02□□□□□ -0.17
CHD3-203ENST00000380358 CABLES1Q8TDN4 633 aa14.02□□□□□ -0.17
CHD3-203ENST00000380358 JAKMIP2Q96AA8 810 aa14.02□□□□□ -0.17
CHD3-203ENST00000380358 GOLGA6AQ9NYA3 693 aa14.02□□□□□ -0.17
CHD3-203ENST00000380358 ITKQ08881 620 aa14.02□□□□□ -0.17
CHD3-203ENST00000380358 PDE3AQ14432 1141 aa14.02□□□□□ -0.17
CHD3-203ENST00000380358 FYCO1Q9BQS8 1478 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms