RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CCT2P78371 535 aaKnown RBP15.85■□□□□ 0.13
CCDC3-202ENST00000378839 IFIT5Q13325 482 aaKnown RBP15.85■□□□□ 0.13
CCDC3-202ENST00000378839 TTC39AQ5SRH9 613 aa15.85■□□□□ 0.13
CCDC3-202ENST00000378839 VGLL2Q8N8G2 317 aa15.85■□□□□ 0.13
CCDC3-202ENST00000378839 NSUN7Q8NE18 718 aaKnown RBP15.85■□□□□ 0.13
CCDC3-202ENST00000378839 TEX13AQ9BXU3 409 aaPredicted RBP15.85■□□□□ 0.13
CCDC3-202ENST00000378839 TBC1D2BQ9UPU7 963 aa15.85■□□□□ 0.13
CCDC3-202ENST00000378839 PHF14O94880 888 aa15.84■□□□□ 0.13
CCDC3-202ENST00000378839 MCAMP43121 646 aa15.84■□□□□ 0.13
CCDC3-202ENST00000378839 SYTL4Q96C24 671 aaPredicted RBP15.84■□□□□ 0.13
CCDC3-202ENST00000378839 PGBD1Q96JS3 809 aa15.84■□□□□ 0.13
CCDC3-202ENST00000378839 SPEF2Q9C093 1822 aa15.84■□□□□ 0.13
CCDC3-202ENST00000378839 FOSBP53539 338 aa15.84■□□□□ 0.13
CCDC3-202ENST00000378839 PDCP20941 246 aa15.83■□□□□ 0.13
CCDC3-202ENST00000378839 HAND2P61296 217 aa15.83■□□□□ 0.13
CCDC3-202ENST00000378839 KRT85P78386 507 aa15.83■□□□□ 0.13
CCDC3-202ENST00000378839 HS1BP3Q53T59 392 aa15.83■□□□□ 0.13
CCDC3-202ENST00000378839 CDHR2Q9BYE9 1310 aa15.83■□□□□ 0.12
CCDC3-202ENST00000378839 ADD1P35611 737 aaKnown RBP15.83■□□□□ 0.12
CCDC3-202ENST00000378839 LEO1Q8WVC0 666 aaPredicted RBP15.83■□□□□ 0.12
CCDC3-202ENST00000378839 USP25Q9UHP3 1055 aa15.83■□□□□ 0.12
CCDC3-202ENST00000378839 DENND2AQ9ULE3 1009 aa15.83■□□□□ 0.12
CCDC3-202ENST00000378839 AKAP11Q9UKA4 1901 aa15.83■□□□□ 0.12
CCDC3-202ENST00000378839 ROBO1Q9Y6N7 1651 aa15.83■□□□□ 0.12
CCDC3-202ENST00000378839 CTSWP56202 376 aa15.83■□□□□ 0.12
CCDC3-202ENST00000378839 CCDC158Q5M9N0 1113 aa15.83■□□□□ 0.12
CCDC3-202ENST00000378839 CERKQ8TCT0 537 aa15.83■□□□□ 0.12
CCDC3-202ENST00000378839 FTOQ9C0B1 505 aaKnown RBP eCLIP15.83■□□□□ 0.12
CCDC3-202ENST00000378839 ELP1O95163 1332 aa15.82■□□□□ 0.12
CCDC3-202ENST00000378839 CAMK4Q16566 473 aa15.82■□□□□ 0.12
CCDC3-202ENST00000378839 COL14A1Q05707 1796 aaKnown RBP15.82■□□□□ 0.12
CCDC3-202ENST00000378839 IRS4O14654 1257 aaPredicted RBP15.82■□□□□ 0.12
CCDC3-202ENST00000378839 FGAP02671 866 aa15.82■□□□□ 0.12
CCDC3-202ENST00000378839 PDIA3P30101 505 aaKnown RBP15.82■□□□□ 0.12
CCDC3-202ENST00000378839 TAF7LQ5H9L4 462 aa15.82■□□□□ 0.12
CCDC3-202ENST00000378839 SALL1Q9NSC2 1324 aa15.82■□□□□ 0.12
CCDC3-202ENST00000378839 NUP98P52948 1817 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 KAT6BQ8WYB5 2073 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 SNAP23O00161 211 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 TOM1O60784 492 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 GORABQ5T7V8 394 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 LDHAL6AQ6ZMR3 332 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 NBPF3Q9H094 633 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 FBXO3Q9UK99 471 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 AKAP2Q9Y2D5 859 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 MYO5AQ9Y4I1 1855 aaKnown RBP15.81■□□□□ 0.12
CCDC3-202ENST00000378839 ATP2B3Q16720 1220 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 METTL24Q5JXM2 366 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 ANKRD36CQ5JPF3 1778 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 PTPDC1A2A3K4 754 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 WASHC4Q2M389 1173 aa15.81■□□□□ 0.12
CCDC3-202ENST00000378839 TRMT112Q9UI30 125 aaKnown RBP15.81■□□□□ 0.12
CCDC3-202ENST00000378839 A0A0U1RQG5 324 aaPredicted RBP15.8■□□□□ 0.12
CCDC3-202ENST00000378839 ILDR1Q86SU0 546 aaPredicted RBP15.8■□□□□ 0.12
CCDC3-202ENST00000378839 SPATA32Q96LK8 384 aa15.8■□□□□ 0.12
CCDC3-202ENST00000378839 PIH1D3Q9NQM4 214 aaKnown RBP15.8■□□□□ 0.12
CCDC3-202ENST00000378839 ZKSCAN5Q9Y2L8 839 aa15.8■□□□□ 0.12
CCDC3-202ENST00000378839 HMGB1P09429 215 aaKnown RBP15.8■□□□□ 0.12
CCDC3-202ENST00000378839 FDPSP14324 419 aaKnown RBP15.8■□□□□ 0.12
CCDC3-202ENST00000378839 ANTXR2P58335 489 aa15.8■□□□□ 0.12
CCDC3-202ENST00000378839 AHDC1Q5TGY3 1603 aaPredicted RBP15.8■□□□□ 0.12
CCDC3-202ENST00000378839 EXOC5O00471 708 aa15.79■□□□□ 0.12
CCDC3-202ENST00000378839 LETM1O95202 739 aaPredicted RBP15.79■□□□□ 0.12
CCDC3-202ENST00000378839 FGD1P98174 961 aa15.79■□□□□ 0.12
CCDC3-202ENST00000378839 CSPP1Q1MSJ5 1256 aa15.79■□□□□ 0.12
CCDC3-202ENST00000378839 INTS5Q6P9B9 1019 aaKnown RBP15.79■□□□□ 0.12
CCDC3-202ENST00000378839 TICAM2Q86XR7 235 aa15.79■□□□□ 0.12
CCDC3-202ENST00000378839 ZNF34Q8IZ26 560 aa15.79■□□□□ 0.12
CCDC3-202ENST00000378839 HELBQ8NG08 1087 aaPredicted RBP15.79■□□□□ 0.12
CCDC3-202ENST00000378839 DACT1Q9NYF0 836 aa15.79■□□□□ 0.12
CCDC3-202ENST00000378839 PLCH1Q4KWH8 1693 aa15.79■□□□□ 0.12
CCDC3-202ENST00000378839 DOT1LQ8TEK3 1739 aa15.79■□□□□ 0.12
CCDC3-202ENST00000378839 DZIP3Q86Y13 1208 aaKnown RBP15.79■□□□□ 0.12
CCDC3-202ENST00000378839 NR1I2O75469 434 aa15.79■□□□□ 0.12
CCDC3-202ENST00000378839 PHKA1P46020 1223 aa15.79■□□□□ 0.12
CCDC3-202ENST00000378839 ZNF830Q96NB3 372 aaPredicted RBP15.79■□□□□ 0.12
CCDC3-202ENST00000378839 ADCY5O95622 1261 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 MSNP26038 577 aaKnown RBP15.78■□□□□ 0.12
CCDC3-202ENST00000378839 CEBPZQ03701 1054 aaKnown RBP15.78■□□□□ 0.12
CCDC3-202ENST00000378839 RAB11FIP4Q86YS3 637 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 APPBP2Q92624 585 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 LLPHQ9BRT6 129 aaKnown RBP15.78■□□□□ 0.12
CCDC3-202ENST00000378839 COL4A1P02462 1669 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 GPAA1O43292 621 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 ZNF500O60304 480 aaPredicted RBP15.78■□□□□ 0.12
CCDC3-202ENST00000378839 GUCY1B3Q02153 619 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 UVSSAQ2YD98 709 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 CKAP2LQ8IYA6 745 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 CNNM1Q9NRU3 951 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 HPS5Q9UPZ3 1129 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 MYH3P11055 1940 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 WNK3Q9BYP7 1800 aa15.78■□□□□ 0.12
CCDC3-202ENST00000378839 ANKRD18BA2A2Z9 1011 aa15.77■□□□□ 0.12
CCDC3-202ENST00000378839 SUSD4Q5VX71 490 aa15.77■□□□□ 0.12
CCDC3-202ENST00000378839 MB21D2Q8IYB1 491 aaPredicted RBP15.77■□□□□ 0.12
CCDC3-202ENST00000378839 FAM184AQ8NB25 1140 aa15.77■□□□□ 0.12
CCDC3-202ENST00000378839 ACSBG1Q96GR2 724 aa15.77■□□□□ 0.12
CCDC3-202ENST00000378839 SCAND2PQ9GZW5 306 aaPredicted RBP15.77■□□□□ 0.12
CCDC3-202ENST00000378839 MRVI1Q9Y6F6 885 aa15.77■□□□□ 0.12
CCDC3-202ENST00000378839 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms