RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 NEFHP12036 1026 aa17.25■□□□□ 0.35
NPHP4-201ENST00000378156 CCDC102BQ68D86 513 aa17.25■□□□□ 0.35
NPHP4-201ENST00000378156 FAM107BQ9H098 131 aa17.25■□□□□ 0.35
NPHP4-201ENST00000378156 NSFL1CQ9UNZ2 370 aaKnown RBP17.25■□□□□ 0.35
NPHP4-201ENST00000378156 RTN1Q16799 776 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 HS1BP3Q53T59 392 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 PRC1O43663 620 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 TSPY3P0CV98 308 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 TSPY8P0CW00 308 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 GSDMDP57764 484 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 FAM173BQ6P4H8 233 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 SHTN1A0MZ66 631 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 EYA2O00167 538 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 CCDC178Q5BJE1 867 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 CCDC148Q8NFR7 591 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 UBE2Q2Q8WVN8 375 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 PRIMPOLQ96LW4 560 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 SEPT11Q9NVA2 429 aaKnown RBP17.24■□□□□ 0.35
NPHP4-201ENST00000378156 KIF24Q5T7B8 1368 aa17.24■□□□□ 0.35
NPHP4-201ENST00000378156 MCM3P25205 808 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 TIMM10P62072 90 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 MAP9Q49MG5 647 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 USP44Q9H0E7 712 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 RAD50Q92878 1312 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 PKP1Q13835 747 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 FKBP15Q5T1M5 1219 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 TSG101Q99816 390 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 ZC3H12CQ9C0D7 883 aaKnown RBP17.23■□□□□ 0.35
NPHP4-201ENST00000378156 A1BGP04217 495 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 GNAT2P19087 354 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 KIAA1328Q86T90 577 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 CPLX3Q8WVH0 158 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 DDX17Q92841 729 aaKnown RBP17.23■□□□□ 0.35
NPHP4-201ENST00000378156 ZNF804AQ7Z570 1209 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 IL17REQ8NFR9 667 aa17.23■□□□□ 0.35
NPHP4-201ENST00000378156 MRPS27Q92552 414 aaKnown RBP17.23■□□□□ 0.35
NPHP4-201ENST00000378156 ZNF496Q96IT1 587 aaPredicted RBP17.23■□□□□ 0.35
NPHP4-201ENST00000378156 CCDC129Q6ZRS4 1044 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.22■□□□□ 0.352e-6■■■■■ 148.9
NPHP4-201ENST00000378156 ARHGEF10O15013 1369 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 AOX1Q06278 1338 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 SH3TC1Q8TE82 1336 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 MAGEB6P1A0A0J9YX57 407 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 KIF20AO95235 890 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 ZNF445P59923 1031 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 CALML4Q96GE6 196 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 GNAQP50148 359 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 GIMAP7Q8NHV1 300 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 F8W031 263 aaPredicted RBP17.22■□□□□ 0.35
NPHP4-201ENST00000378156 FGFR1OPO95684 399 aaKnown RBP17.22■□□□□ 0.35
NPHP4-201ENST00000378156 IDEP14735 1019 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 SEPT7Q16181 437 aaKnown RBP17.22■□□□□ 0.35
NPHP4-201ENST00000378156 KANK3Q6NY19 840 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 PYM1Q9BRP8 204 aaKnown RBP17.22■□□□□ 0.35
NPHP4-201ENST00000378156 TMX1Q9H3N1 280 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 PALD1Q9ULE6 856 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.22■□□□□ 0.35
NPHP4-201ENST00000378156 CDC42BPAQ5VT25 1732 aa17.22■□□□□ 0.35
NPHP4-201ENST00000378156 PTPDC1A2A3K4 754 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 GADD45BO75293 160 aaPredicted RBP17.21■□□□□ 0.35
NPHP4-201ENST00000378156 MARCKSP29966 332 aaPredicted RBP17.21■□□□□ 0.35
NPHP4-201ENST00000378156 MATR3P43243 847 aaKnown RBP eCLIP17.21■□□□□ 0.352e-6■■■■□ 26.1
NPHP4-201ENST00000378156 SYKP43405 635 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 EIF4A1P60842 406 aaKnown RBP17.21■□□□□ 0.35
NPHP4-201ENST00000378156 DHX32Q7L7V1 743 aaKnown RBP17.21■□□□□ 0.35
NPHP4-201ENST00000378156 SUCLG2Q96I99 432 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 UBA5Q9GZZ9 404 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 TFCP2L1Q9NZI6 479 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 SLC27A2O14975 620 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 CD2BP2O95400 341 aaKnown RBP17.21■□□□□ 0.35
NPHP4-201ENST00000378156 EHMT1Q9H9B1 1298 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 AMPD3Q01432 767 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 PARP10Q53GL7 1025 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 A0A1B0GUL7 405 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 LUZP1Q86V48 1076 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 MAGEB6Q8N7X4 407 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 KCNG4Q8TDN1 519 aa17.21■□□□□ 0.35
NPHP4-201ENST00000378156 HSPA4P34932 840 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 AOPEPQ8N6M6 819 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 DBNDD2Q9BQY9 259 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 ANKRD2Q9GZV1 360 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 GNPATO15228 680 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 MIGA1Q8NAN2 632 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 CENPHQ9H3R5 247 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 TMEM63CQ9P1W3 806 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 KCNQ3O43525 872 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 MYO1BO43795 1136 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 SKILP12757 684 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 PPP4R3BQ5MIZ7 849 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 NDUFB9Q9Y6M9 179 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 TRPM1Q7Z4N2 1603 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 FAM193AP78312 1265 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 CEP135Q66GS9 1140 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 CHAMP1Q96JM3 812 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 METP08581 1390 aa17.2■□□□□ 0.34
NPHP4-201ENST00000378156 BMP15O95972 392 aa17.19■□□□□ 0.34
NPHP4-201ENST00000378156 HSP90AA4PQ58FG1 418 aa17.19■□□□□ 0.34
NPHP4-201ENST00000378156 CACNA2D4Q7Z3S7 1137 aa17.19■□□□□ 0.34
NPHP4-201ENST00000378156 RPS6KB1P23443 525 aa17.19■□□□□ 0.34
NPHP4-201ENST00000378156 SNW1Q13573 536 aaKnown RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms