RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 BAG5Q9UL15 447 aa12□□□□□ -0.49
RTN3-206ENST00000377819 GIGYF1O75420 1035 aaPredicted RBP12□□□□□ -0.49
RTN3-206ENST00000377819 TUBBP07437 444 aa12□□□□□ -0.49
RTN3-206ENST00000377819 PPP1R7Q15435 360 aa12□□□□□ -0.49
RTN3-206ENST00000377819 CCDC25Q86WR0 208 aa12□□□□□ -0.49
RTN3-206ENST00000377819 ANKRD24Q8TF21 1146 aa12□□□□□ -0.49
RTN3-206ENST00000377819 TRMT112Q9UI30 125 aaKnown RBP12□□□□□ -0.49
RTN3-206ENST00000377819 KRT86O43790 486 aa12□□□□□ -0.49
RTN3-206ENST00000377819 GABPAQ06546 454 aa12□□□□□ -0.49
RTN3-206ENST00000377819 STX1AQ16623 288 aa12□□□□□ -0.49
RTN3-206ENST00000377819 HVCN1Q96D96 273 aa12□□□□□ -0.49
RTN3-206ENST00000377819 BCAR3O75815 825 aa12□□□□□ -0.49
RTN3-206ENST00000377819 ATP5DP30049 168 aa12□□□□□ -0.49
RTN3-206ENST00000377819 CASKIN1Q8WXD9 1431 aa12□□□□□ -0.49
RTN3-206ENST00000377819 CTAGE9A4FU28 777 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 STK10O94804 968 aaKnown RBP11.99□□□□□ -0.49
RTN3-206ENST00000377819 KRT83P78385 493 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 TRPC3Q13507 836 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 PLCB4Q15147 1175 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 TMCO4Q5TGY1 634 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 LEO1Q8WVC0 666 aaPredicted RBP11.99□□□□□ -0.49
RTN3-206ENST00000377819 NOB1Q9ULX3 412 aaKnown RBP11.99□□□□□ -0.49
RTN3-206ENST00000377819 USP16Q9Y5T5 823 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 BICDL2A1A5D9 508 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 CHD1LQ86WJ1 897 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 THEMISQ8N1K5 641 aaPredicted RBP11.99□□□□□ -0.49
RTN3-206ENST00000377819 PRDM10Q9NQV6 1147 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 KRT222Q8N1A0 295 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 CCDC42Q96M95 316 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 BOLA2Q9H3K6 86 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 TMOD3Q9NYL9 352 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 NBPF6Q5VWK0 638 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 FYB2Q5VWT5 728 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 NBPF4Q96M43 638 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 ORC3Q9UBD5 711 aaPredicted RBP11.99□□□□□ -0.49
RTN3-206ENST00000377819 PAXBP1Q9Y5B6 917 aa11.99□□□□□ -0.49
RTN3-206ENST00000377819 DAPK3O43293 454 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 KMT5BQ4FZB7 885 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 TMEM67Q5HYA8 995 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 NOX5Q96PH1 765 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 TSPYL2Q9H2G4 693 aaPredicted RBP11.98□□□□□ -0.49
RTN3-206ENST00000377819 CCDC7Q96M83 1385 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 ZEB2O60315 1214 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 RPS6KA2Q15349 733 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 GKAP1Q5VSY0 366 aaPredicted RBP11.98□□□□□ -0.49
RTN3-206ENST00000377819 RNF168Q8IYW5 571 aaPredicted RBP11.98□□□□□ -0.49
RTN3-206ENST00000377819 TNPO1Q92973 898 aaKnown RBP11.98□□□□□ -0.49
RTN3-206ENST00000377819 SYNJ2O15056 1496 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 CAPN2P17655 700 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 CDR2Q01850 454 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 SMARCC2Q8TAQ2 1214 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 DDX27Q96GQ7 796 aaKnown RBP11.98□□□□□ -0.49
RTN3-206ENST00000377819 SMIM23A6NLE4 172 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 LGSNQ5TDP6 509 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 RRAGBQ5VZM2 374 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 MCUR1Q96AQ8 359 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 EVI5LQ96CN4 794 aa11.98□□□□□ -0.49
RTN3-206ENST00000377819 TNNC1P63316 161 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 ATP11AP98196 1134 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 ITIH3Q06033 890 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 UAP1Q16222 522 aaPredicted RBP11.97□□□□□ -0.49
RTN3-206ENST00000377819 CEP85LQ5SZL2 805 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.97□□□□□ -0.49
RTN3-206ENST00000377819 PALM3A6NDB9 673 aaPredicted RBP11.97□□□□□ -0.49
RTN3-206ENST00000377819 TSNAXIP1Q2TAA8 658 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 CCDC38Q502W7 563 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 ZNF622Q969S3 477 aaKnown RBP eCLIP11.97□□□□□ -0.493e-7■■■■□ 19.7
RTN3-206ENST00000377819 BACH1O14867 736 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 DNAJC8O75937 253 aaPredicted RBP11.97□□□□□ -0.49
RTN3-206ENST00000377819 GPHNQ9NQX3 736 aaPredicted RBP11.97□□□□□ -0.49
RTN3-206ENST00000377819 KIAA0586Q9BVV6 1533 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 SLC12A2P55011 1212 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 MFSD6Q6ZSS7 791 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 CCDC65Q8IXS2 484 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 SUDS3Q9H7L9 328 aaPredicted RBP11.97□□□□□ -0.49
RTN3-206ENST00000377819 LIMCH1Q9UPQ0 1083 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 GCC2Q8IWJ2 1684 aa11.97□□□□□ -0.49
RTN3-206ENST00000377819 MIER3Q7Z3K6 550 aa11.96□□□□□ -0.49
RTN3-206ENST00000377819 ATP2A3Q93084 1043 aa11.96□□□□□ -0.49
RTN3-206ENST00000377819 SRRTQ9BXP5 876 aaKnown RBP11.96□□□□□ -0.49
RTN3-206ENST00000377819 TMEM110-MUSTN1A8MSY1 372 aa11.96□□□□□ -0.49
RTN3-206ENST00000377819 TUBB4AP04350 444 aa11.96□□□□□ -0.49
RTN3-206ENST00000377819 GSTO1P78417 241 aa11.96□□□□□ -0.49
RTN3-206ENST00000377819 PPP2R5CQ13362 524 aa11.96□□□□□ -0.49
RTN3-206ENST00000377819 CRNKL1Q9BZJ0 848 aaKnown RBP11.96□□□□□ -0.49
RTN3-206ENST00000377819 TMOD4Q9NZQ9 345 aa11.96□□□□□ -0.49
RTN3-206ENST00000377819 ASIC1P78348 528 aa11.96□□□□□ -0.5
RTN3-206ENST00000377819 ZBTB17Q13105 803 aa11.96□□□□□ -0.5
RTN3-206ENST00000377819 TMTC2Q8N394 836 aa11.96□□□□□ -0.5
RTN3-206ENST00000377819 STAT6P42226 847 aa11.96□□□□□ -0.5
RTN3-206ENST00000377819 KRT79Q5XKE5 535 aa11.96□□□□□ -0.5
RTN3-206ENST00000377819 MICU3Q86XE3 530 aa11.96□□□□□ -0.5
RTN3-206ENST00000377819 ZFP91Q96JP5 570 aaPredicted RBP11.96□□□□□ -0.5
RTN3-206ENST00000377819 SPDYE3A6NKU9 549 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 UBASH3AP57075 661 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 ARID5AQ03989 594 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 CCDC62Q6P9F0 684 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 ADAMTS8Q9UP79 889 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 TCOF1Q13428 1488 aaKnown RBP11.95□□□□□ -0.5
RTN3-206ENST00000377819 MCM5P33992 734 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms