RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 TMEM57Q8N5G2 664 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 ATP2A3Q93084 1043 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 PDCD2Q16342 344 aaPredicted RBP13.1□□□□□ -0.31
VPS13A-205ENST00000376636 THEGQ9P2T0 379 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 ZC4H2Q9NQZ6 224 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 FAN1Q9Y2M0 1017 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 ERICH3Q5RHP9 1530 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 RUFY3Q7L099 469 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 PTGS1P23219 599 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 NUTM1Q86Y26 1132 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 AGTPBP1Q9UPW5 1226 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 ZNF131P52739 623 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 CAPZA3Q96KX2 299 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 FAM13AO94988 1023 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 ALDH1L2Q3SY69 923 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 TMTC2Q8N394 836 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 UBL4BQ8N7F7 174 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 NCOA7Q8NI08 942 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 EXOC6BQ9Y2D4 811 aa13.1□□□□□ -0.31
VPS13A-205ENST00000376636 CCT2P78371 535 aaKnown RBP13.09□□□□□ -0.31
VPS13A-205ENST00000376636 UBXN1Q04323 297 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 FGD6Q6ZV73 1430 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 TMEM110-MUSTN1A8MSY1 372 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 HCLS1P14317 486 aaPredicted RBP13.09□□□□□ -0.31
VPS13A-205ENST00000376636 COG7P83436 770 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 WDR70Q9NW82 654 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 DAPK1P53355 1430 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.09□□□□□ -0.31
VPS13A-205ENST00000376636 GOLGA6CA6NDK9 693 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 GOLGA6DP0CG33 693 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 FLIIQ13045 1269 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 PPANQ9NQ55 473 aaKnown RBP13.09□□□□□ -0.31
VPS13A-205ENST00000376636 GOLGA6AQ9NYA3 693 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 DDX54Q8TDD1 881 aaKnown RBP13.09□□□□□ -0.31
VPS13A-205ENST00000376636 KIFC2Q96AC6 838 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 WDR46O15213 610 aaKnown RBP13.09□□□□□ -0.31
VPS13A-205ENST00000376636 SLC8A3P57103 927 aa13.09□□□□□ -0.31
VPS13A-205ENST00000376636 B4DLN1 442 aa13.08□□□□□ -0.31
VPS13A-205ENST00000376636 HPDP32754 393 aaPredicted RBP13.08□□□□□ -0.31
VPS13A-205ENST00000376636 MRPL12P52815 198 aaKnown RBP13.08□□□□□ -0.31
VPS13A-205ENST00000376636 RUFY4Q6ZNE9 571 aa13.08□□□□□ -0.31
VPS13A-205ENST00000376636 MICU3Q86XE3 530 aa13.08□□□□□ -0.31
VPS13A-205ENST00000376636 SMAP1Q8IYB5 467 aaPredicted RBP13.08□□□□□ -0.31
VPS13A-205ENST00000376636 GUCA1BQ9UMX6 200 aa13.08□□□□□ -0.31
VPS13A-205ENST00000376636 RAD54L2Q9Y4B4 1467 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 GJC1P36383 396 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 MAP2K2P36507 400 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 BOLA2Q9H3K6 86 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 UAP1Q16222 522 aaPredicted RBP13.08□□□□□ -0.32
VPS13A-205ENST00000376636 MUM1Q2TAK8 710 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 RPGRQ92834 1020 aaKnown RBP13.08□□□□□ -0.32
VPS13A-205ENST00000376636 SLC4A8Q2Y0W8 1093 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 RTL1A6NKG5 1358 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 IFT20Q8IY31 132 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 EIF2AQ9BY44 585 aaKnown RBP13.08□□□□□ -0.32
VPS13A-205ENST00000376636 NAA16Q6N069 864 aaPredicted RBP13.08□□□□□ -0.32
VPS13A-205ENST00000376636 SSFA2P28290 1259 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 TERF1P54274 439 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 JPH4Q96JJ6 628 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 KRT23Q9C075 422 aa13.08□□□□□ -0.32
VPS13A-205ENST00000376636 TSPY2A6NKD2 308 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 LGSNQ5TDP6 509 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 CABP5Q9NP86 173 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 ANKRD50Q9ULJ7 1429 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 ATP6V1E1P36543 226 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 PSMD6Q15008 389 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 XAB2Q9HCS7 855 aaKnown RBP13.07□□□□□ -0.32
VPS13A-205ENST00000376636 PSPC1Q8WXF1 523 aaKnown RBP13.07□□□□□ -0.32
VPS13A-205ENST00000376636 CNNM2Q9H8M5 875 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 SMIM24O75264 130 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 GSTO1P78417 241 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 ISM2Q6H9L7 571 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 RASA3Q14644 834 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 C6orf50Q9HD87 102 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 TLDC2A0PJX2 215 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 ARID5AQ03989 594 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 FAM160A1Q05DH4 1040 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 TAF12Q16514 161 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 FRMD4BQ9Y2L6 1034 aa13.07□□□□□ -0.32
VPS13A-205ENST00000376636 HS2ST1Q7LGA3 356 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 SLC26A6Q9BXS9 759 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 NOC2LQ9Y3T9 749 aaKnown RBP13.06□□□□□ -0.32
VPS13A-205ENST00000376636 RBM27Q9P2N5 1060 aaKnown RBP13.06□□□□□ -0.32
VPS13A-205ENST00000376636 PTPRCP08575 1304 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 ZSCAN22P10073 491 aaPredicted RBP13.06□□□□□ -0.32
VPS13A-205ENST00000376636 RHOXF2BP0C7M4 288 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 RHOXF2Q9BQY4 288 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 ANKFY1Q9P2R3 1169 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 TMCO4Q5TGY1 634 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 PHLDB3Q6NSJ2 640 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 SMARCC2Q8TAQ2 1214 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 ZKSCAN5Q9Y2L8 839 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 USP16Q9Y5T5 823 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 VWA3BQ502W6 1294 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 MRPS27Q92552 414 aaKnown RBP13.06□□□□□ -0.32
VPS13A-205ENST00000376636 HFM1A2PYH4 1435 aa13.06□□□□□ -0.32
VPS13A-205ENST00000376636 KRT3P12035 628 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 ASIC1P78348 528 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 SDCCAG3Q96C92 435 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 AP1ARQ63HQ0 302 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 1286 ms