RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RASAL2Q9UJF2 1139 aa15.56■□□□□ 0.08
COL4A1-201ENST00000375820 RTL1A6NKG5 1358 aa15.56■□□□□ 0.08
COL4A1-201ENST00000375820 POGZQ7Z3K3 1410 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 MRPS27Q92552 414 aaKnown RBP15.55■□□□□ 0.08
COL4A1-201ENST00000375820 ZSCAN16Q9H4T2 348 aaPredicted RBP15.55■□□□□ 0.08
COL4A1-201ENST00000375820 HMG20BQ9P0W2 317 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 SAP30BPQ9UHR5 308 aaKnown RBP15.55■□□□□ 0.08
COL4A1-201ENST00000375820 NIP7Q9Y221 180 aaKnown RBP eCLIP15.55■□□□□ 0.08
COL4A1-201ENST00000375820 DTNBO60941 627 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 RAPGEF1Q13905 1077 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 NOLC1Q14978 699 aaKnown RBP eCLIP15.55■□□□□ 0.08
COL4A1-201ENST00000375820 BMP2KLQ5H9B9 411 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 VPS18Q9P253 973 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 MAGEB6P1A0A0J9YX57 407 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 RNASE9P60153 205 aaKnown RBP15.55■□□□□ 0.08
COL4A1-201ENST00000375820 MICALL1Q8N3F8 863 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 EHBP1Q8NDI1 1231 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 LRRC27Q9C0I9 530 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 PAXBP1Q9Y5B6 917 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 CCDC172P0C7W6 258 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 CEP57Q86XR8 500 aa15.55■□□□□ 0.08
COL4A1-201ENST00000375820 SREK1Q8WXA9 508 aaKnown RBP15.55■□□□□ 0.08
COL4A1-201ENST00000375820 SUPT6HQ7KZ85 1726 aaKnown RBP15.54■□□□□ 0.08
COL4A1-201ENST00000375820 CTAGE9A4FU28 777 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 UQCRFS1P1P0C7P4 283 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 MCMDC2Q4G0Z9 681 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 MPHOSPH6Q99547 160 aaKnown RBP15.54■□□□□ 0.08
COL4A1-201ENST00000375820 PLEKHH2Q8IVE3 1493 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 ZNF569Q5MCW4 686 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 ABCC11Q96J66 1382 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 RASA3Q14644 834 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 ARFGAP3Q9NP61 516 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 TNNQ9UQP3 1299 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 SH3BP5O60239 455 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 SF3A3Q12874 501 aaKnown RBP eCLIP15.54■□□□□ 0.08
COL4A1-201ENST00000375820 TMCO4Q5TGY1 634 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 TBC1D32Q96NH3 1257 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 EPRSP07814 1512 aaKnown RBP15.54■□□□□ 0.08
COL4A1-201ENST00000375820 NESP48681 1621 aa15.54■□□□□ 0.08
COL4A1-201ENST00000375820 ACEP12821 1306 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 HGSO14964 777 aaPredicted RBP15.53■□□□□ 0.08
COL4A1-201ENST00000375820 HECW1Q76N89 1606 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 PSMA7O14818 248 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 CABLES1Q8TDN4 633 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 PYM1Q9BRP8 204 aaKnown RBP15.53■□□□□ 0.08
COL4A1-201ENST00000375820 CCDC171Q6TFL3 1326 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 ERCC3P19447 782 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 NUCB1Q02818 461 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 CTAGE1Q96RT6 745 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 MCM9Q9NXL9 1143 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 CAMSAP2Q08AD1 1489 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 TACC1O75410 805 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 ERCC5P28715 1186 aaPredicted RBP15.53■□□□□ 0.08
COL4A1-201ENST00000375820 TPD52P55327 224 aaPredicted RBP15.53■□□□□ 0.08
COL4A1-201ENST00000375820 IMPG2Q9BZV3 1241 aa15.53■□□□□ 0.08
COL4A1-201ENST00000375820 CCT6AP40227 531 aaKnown RBP15.52■□□□□ 0.08
COL4A1-201ENST00000375820 KLHL40Q2TBA0 621 aa15.52■□□□□ 0.08
COL4A1-201ENST00000375820 KCNG4Q8TDN1 519 aa15.52■□□□□ 0.08
COL4A1-201ENST00000375820 ESYT1Q9BSJ8 1104 aa15.52■□□□□ 0.08
COL4A1-201ENST00000375820 NSRP1Q9H0G5 558 aaKnown RBP15.52■□□□□ 0.08
COL4A1-201ENST00000375820 TROQ12816 1431 aaPredicted RBP15.52■□□□□ 0.08
COL4A1-201ENST00000375820 KRT5P13647 590 aa15.52■□□□□ 0.08
COL4A1-201ENST00000375820 KRT9P35527 623 aa15.52■□□□□ 0.08
COL4A1-201ENST00000375820 EIF6P56537 245 aaKnown RBP15.52■□□□□ 0.08
COL4A1-201ENST00000375820 PPP1R7Q15435 360 aa15.52■□□□□ 0.08
COL4A1-201ENST00000375820 SPDYE3A6NKU9 549 aa15.52■□□□□ 0.08
COL4A1-201ENST00000375820 CHMP2AO43633 222 aa15.52■□□□□ 0.08
COL4A1-201ENST00000375820 CCDC65Q8IXS2 484 aa15.52■□□□□ 0.08
COL4A1-201ENST00000375820 LRRC59Q96AG4 307 aaKnown RBP15.52■□□□□ 0.08
COL4A1-201ENST00000375820 PLVAPQ9BX97 442 aa15.52■□□□□ 0.08
COL4A1-201ENST00000375820 KRT222Q8N1A0 295 aa15.52■□□□□ 0.07
COL4A1-201ENST00000375820 SIRT1Q96EB6 747 aa15.52■□□□□ 0.07
COL4A1-201ENST00000375820 RABEP2Q9H5N1 569 aa15.52■□□□□ 0.07
COL4A1-201ENST00000375820 PAG1Q9NWQ8 432 aa15.52■□□□□ 0.07
COL4A1-201ENST00000375820 MAP7D1Q3KQU3 841 aa15.52■□□□□ 0.07
COL4A1-201ENST00000375820 SYT10Q6XYQ8 523 aa15.52■□□□□ 0.07
COL4A1-201ENST00000375820 C8orf37Q96NL8 207 aa15.52■□□□□ 0.07
COL4A1-201ENST00000375820 SNAPC4Q5SXM2 1469 aa15.52■□□□□ 0.07
COL4A1-201ENST00000375820 PPP1R21Q6ZMI0 780 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 KRT2P35908 639 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 PRIM1P49642 420 aaKnown RBP15.51■□□□□ 0.07
COL4A1-201ENST00000375820 PDE1AP54750 535 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 CWF19L2Q2TBE0 894 aaKnown RBP15.51■□□□□ 0.07
COL4A1-201ENST00000375820 OGFOD1Q8N543 542 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 UBLCP1Q8WVY7 318 aaPredicted RBP15.51■□□□□ 0.07
COL4A1-201ENST00000375820 C6orf50Q9HD87 102 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 IFNKQ9P0W0 207 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 F13A1P00488 732 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 CPA1P15085 419 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 CAPN2P17655 700 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 NEK11Q8NG66 645 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 RRP36Q96EU6 259 aaKnown RBP15.51■□□□□ 0.07
COL4A1-201ENST00000375820 ZWINTO95229 277 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 CCDC129Q6ZRS4 1044 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 FAM135AQ9P2D6 1515 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 MAEAQ7L5Y9 396 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 HDAC9Q9UKV0 1011 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 ATP6V0A2Q9Y487 856 aa15.51■□□□□ 0.07
COL4A1-201ENST00000375820 GTF2A1P52655 376 aaPredicted RBP15.5■□□□□ 0.07
COL4A1-201ENST00000375820 TAF12Q16514 161 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms